O15297
Gene name |
PPM1D (WIP1) |
Protein name |
Protein phosphatase 1D |
Names |
Protein phosphatase 2C isoform delta, PP2C-delta, Protein phosphatase magnesium-dependent 1 delta, p53-induced protein phosphatase 1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:8493 |
EC number |
3.1.3.16: Phosphoric monoester hydrolases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for O15297
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-O15297-F1 | Predicted | AlphaFoldDB |
458 variants for O15297
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA400452823 rs1433961136 RCV001331089 |
45 | L>P | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
rs1402052236 CA400454982 RCV001333147 |
119 | H>R | Variant assessed as Somatic; 0.0 impact. Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP gnomAD |
|
CA400451584 rs768126695 RCV000521700 RCV001267122 |
404 | Q>* | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP |
| VAR_080081 | 404 | Q>del | JDVS [UniProt] | Yes | UniProt |
|
rs2031447940 RCV001267067 |
405 | E>* | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000622478 RCV000488009 rs747947002 |
406 | T>missing | Inborn genetic diseases Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV002461247 RCV000487815 CA8687691 rs189669693 |
407 | C>* | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC dbSNP gnomAD |
| VAR_080082 | 407 | C>del | JDVS [UniProt] | Yes | UniProt |
|
RCV000622857 rs1555648564 |
409 | M>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001175329 RCV000513576 rs1555648565 |
413 | P>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1567977657 RCV000767536 |
417 | P>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1064797100 RCV000488173 |
418 | P>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001266785 rs2031449441 |
419 | V>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000791346 rs1598413570 |
421 | S>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV002509645 RCV001266823 rs2031551111 |
421 | S>* | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000440479 rs1057524700 CA16608564 RCV002248662 |
423 | E>* | Familial cancer of breast [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000488394 rs1064797098 |
424 | E>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001266964 rs2031551420 |
424 | E>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1555649009 RCV000677666 |
426 | P>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
rs2031551825 RCV001333146 |
427 | W>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
CA16621552 rs1064797099 RCV000487769 |
427 | W>* | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
| VAR_080083 | 427 | W>del | JDVS [UniProt] | Yes | UniProt |
| VAR_080084 | 446 | S>del | OC; may be associated with disease susceptibility [UniProt] | Yes | UniProt |
| VAR_080085 | 447 | E>del | JDVS [UniProt] | Yes | UniProt |
| VAR_080086 | 462 | Q>del | BC; may be associated with disease susceptibility; gain-of-function mutation that results in increased negative regulation of p53 expression in response to ionizing radiation exposure [UniProt] | Yes | UniProt |
|
rs2031555258 RCV001261951 |
463 | G>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
rs61756416 RCV001196506 RCV002561045 CA8687778 |
469 | K>E | Familial cancer of breast [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1271133647 RCV001196274 |
475 | E>missing | Familial cancer of breast [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_080087 | 478 | C>del | BC; may be associated with disease susceptibility [UniProt] | Yes | UniProt |
| VAR_080088 | 484 | L>del | BC; may be associated with disease susceptibility [UniProt] | Yes | UniProt |
|
RCV001310230 RCV001008817 rs763475304 RCV002249629 |
512 | N>missing | Familial cancer of breast Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001266222 CA8687823 rs759850701 COSM982224 |
525 | E>* | large_intestine endometrium Variant assessed as Somatic; 4.62e-05 impact. Inborn genetic diseases [Cosmic, NCI-TCGA, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
rs2031564242 RCV001253357 |
536 | R>missing | Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_080089 | 538 | L>del | BC; may be associated with disease susceptibility [UniProt] | Yes | UniProt |
|
RCV002469223 rs1382039751 RCV000624504 |
546 | L>missing | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
rs2031565605 RCV001198666 |
547 | M>K | Familial cancer of breast [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001194426 COSM982226 rs779070661 CA8687845 RCV002249460 RCV000760458 |
552 | R>* | Variant assessed as Somatic; 0.0 impact. endometrium Familial cancer of breast haematopoietic_and_lymphoid_tissue Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [NCI-TCGA, Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
| VAR_080090 | 552 | R>del | JDVS [UniProt] | Yes | UniProt |
|
rs765769406 RCV000657771 RCV000767346 RCV002248853 CA8687856 |
572 | R>* | Variant assessed as Somatic; 0.0 impact. Familial cancer of breast Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
RCV001265948 rs1179832290 |
572 | R>P | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1415006641 CA400451950 |
8 | G>A | No |
ClinGen gnomAD |
|
|
rs867538058 CA292225182 |
10 | S>R | No |
ClinGen Ensembl |
|
|
rs1476949755 CA400451988 |
11 | V>A | No |
ClinGen TOPMed |
|
|
rs1199709240 CA400452052 |
14 | D>E | No |
ClinGen TOPMed |
|
|
CA292225199 rs866229886 |
15 | Q>H | No |
ClinGen Ensembl |
|
|
rs1178110228 CA400452068 |
15 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 17 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759976092 CA8687522 |
19 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA400452245 rs1477178316 |
24 | V>I | No |
ClinGen TOPMed |
|
|
CA8687524 rs753233133 |
27 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs974206177 CA292225221 |
27 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
rs756726983 CA8687525 |
28 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA400452426 rs1219384750 |
29 | V>A | No |
ClinGen TOPMed |
|
|
CA8687527 rs16944543 |
30 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1455517774 CA400452476 |
31 | P>H | No |
ClinGen Ensembl |
|
|
CA8687528 rs757366012 |
31 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs866963714 CA400452546 |
33 | P>L | No |
ClinGen gnomAD |
|
|
CA292225239 rs866963714 |
33 | P>Q | No |
ClinGen gnomAD |
|
|
CA400452576 rs1217818543 |
34 | T>M | No |
ClinGen gnomAD |
|
|
rs1487466505 CA400452641 |
38 | K>E | No |
ClinGen gnomAD |
|
| TCGA novel | 40 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs552338842 CA8687531 |
41 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA400452756 rs1347585114 |
42 | R>W | No |
ClinGen TOPMed |
|
|
CA8687532 rs568868564 |
43 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA400452807 rs373862041 |
44 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373862041 CA8687533 |
44 | S>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1010277339 CA292225296 |
46 | S>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 47 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400452850 rs1362214093 |
47 | Q>K | No |
ClinGen gnomAD |
|
|
CA400452886 rs1417525947 |
48 | P>L | No |
ClinGen gnomAD |
|
|
CA8687534 rs769792358 |
49 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292225308 rs944237283 |
50 | P>S | No |
ClinGen Ensembl |
|
|
CA8687535 rs772538228 |
51 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA400452942 rs1438030849 |
51 | P>S | No |
ClinGen gnomAD |
|
|
rs1367540274 CA400453023 |
54 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1241495109 CA400453037 |
55 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA400453053 rs1443684200 |
55 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA400453050 rs1443684200 |
55 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1241495109 CA400453041 |
55 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA8687536 rs748834097 |
56 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400453080 rs748834097 |
56 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687537 rs770413280 |
57 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA292225345 rs775961598 |
58 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA400453125 rs1453472677 |
58 | L>P | No |
ClinGen gnomAD |
|
|
CA400453101 rs775961598 |
58 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA400453147 rs1219480228 |
59 | P>L | No |
ClinGen gnomAD |
|
|
rs774135477 CA8687538 |
60 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400453150 rs1453791981 |
60 | G>S | No |
ClinGen gnomAD |
|
|
rs1381995053 CA400453157 |
61 | G>R | No |
ClinGen gnomAD |
|
|
CA292225362 rs1042657194 |
61 | G>V | No |
ClinGen Ensembl |
|
|
CA400453281 rs1186065984 |
63 | V>G | No |
ClinGen TOPMed |
|
|
CA400453391 rs1405447334 |
67 | G>D | No |
ClinGen gnomAD |
|
|
rs1406686076 CA400453377 |
67 | G>S | No |
ClinGen gnomAD |
|
|
CA8687539 rs759311325 |
68 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs759311325 CA400453430 |
68 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1198453907 CA400453421 |
68 | P>S | No |
ClinGen TOPMed |
|
|
rs767963585 CA8687540 |
69 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400453466 rs1598396639 |
70 | V>A | No |
ClinGen Ensembl |
|
|
CA400453474 rs1333974526 |
71 | A>V | No |
ClinGen gnomAD |
|
|
rs1375271471 CA400453485 |
72 | A>V | No |
ClinGen gnomAD |
|
|
rs537959194 CA8687541 |
73 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8687542 rs761219249 |
73 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400453646 rs1289294131 |
78 | P>L | No |
ClinGen gnomAD |
|
|
rs764676976 CA8687543 |
78 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA292225444 rs1046687596 |
79 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs757343982 CA8687545 |
80 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs757343982 CA400453673 |
80 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1456335663 CA400453713 |
81 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs34632861 RCV000861035 CA8687546 |
82 | A>S | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs1567962294 CA400454273 |
85 | S>L | No |
ClinGen Ensembl |
|
|
rs201612900 CA8687549 |
86 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201612900 CA8687548 RCV000861690 |
86 | P>Q | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs777761218 CA400454329 |
88 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687552 rs777761218 |
88 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687550 RCV000863126 rs139928505 |
88 | P>S | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA8687551 rs139928505 |
88 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs900654745 CA292225498 |
89 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1456766576 CA400454350 |
90 | R>C | No |
ClinGen TOPMed |
|
|
rs1391305414 CA400454374 |
92 | C>R | No |
ClinGen TOPMed gnomAD |
|
|
CA400454383 rs1335352449 |
92 | C>S | No |
ClinGen gnomAD |
|
|
rs1335352449 CA400454380 |
92 | C>Y | No |
ClinGen gnomAD |
|
|
CA400454398 rs1342603818 |
93 | R>C | No |
ClinGen gnomAD |
|
|
rs1446153777 CA400454400 |
93 | R>H | No |
ClinGen gnomAD |
|
|
CA400454408 rs1306152358 |
94 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs368482843 CA8687553 |
94 | R>H | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1318788658 CA400454429 |
95 | R>C | No |
ClinGen gnomAD |
|
|
CA8687554 rs770454702 |
95 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA292225538 rs1003177475 |
96 | S>F | No |
ClinGen Ensembl |
|
|
CA8687555 rs774045398 |
98 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs577505804 CA8687556 |
99 | A>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1443946558 CA400454576 |
102 | A>S | No |
ClinGen gnomAD |
|
|
rs771877652 CA8687557 |
103 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA292225557 rs996386095 |
106 | G>R | No |
ClinGen TOPMed |
|
|
rs75400620 CA292225573 |
111 | E>G | No |
ClinGen Ensembl |
|
|
rs1598396704 CA400454802 |
113 | A>G | No |
ClinGen Ensembl |
|
|
CA400454829 rs777169962 |
114 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200680247 CA8687562 |
117 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400454930 rs1312609701 |
117 | R>Q | No |
ClinGen gnomAD |
|
|
CA292225605 rs748215160 |
119 | H>Q | No |
ClinGen Ensembl |
|
|
rs17853242 CA292225606 |
120 | L>F | No |
ClinGen TOPMed |
|
|
CA400455028 rs1276428173 |
122 | G>A | No |
ClinGen gnomAD |
|
|
CA400455018 rs1320987114 |
122 | G>S | No |
ClinGen TOPMed |
|
|
CA400455029 rs1276428173 |
122 | G>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 125 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687563 rs765316555 |
129 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750521071 CA8687564 |
131 | T>I | No |
ClinGen ExAC |
|
| TCGA novel | 133 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1346992554 CA400455277 |
135 | P>S | No |
ClinGen gnomAD |
|
|
rs751844196 CA8687567 |
139 | C>S | No |
ClinGen ExAC gnomAD |
|
|
rs1201311438 CA400455445 |
142 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
CA8687569 rs148074313 RCV000860897 |
147 | L>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1260488269 CA400455626 |
148 | A>D | No |
ClinGen gnomAD |
|
|
CA400455617 rs1176152587 |
148 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs753777715 CA8687570 |
151 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA400455776 rs1379911533 |
153 | M>I | No |
ClinGen gnomAD |
|
|
CA8687583 rs766503109 |
158 | A>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs763016447 CA8687582 |
158 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763016447 CA400460875 |
158 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs867952044 CA292242004 |
160 | W>* | No |
ClinGen Ensembl |
|
|
rs770546952 CA8687585 |
164 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770546952 CA8687584 |
164 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763912183 CA8687586 |
165 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292242033 rs927779565 |
181 | R>Q | No |
ClinGen gnomAD |
|
|
rs1245022636 CA400461021 |
181 | R>W | No |
ClinGen gnomAD |
|
|
rs1428872112 CA400461031 |
183 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs750456751 CA8687590 |
184 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs757972806 CA8687591 |
185 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA8687593 COSM1221703 rs375732384 |
190 | V>I | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs1424685301 CA400461172 |
203 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA292242049 rs898936700 |
206 | D>E | No |
ClinGen gnomAD |
|
|
CA8687595 rs370065255 |
206 | D>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8687596 rs147269687 |
209 | R>G | No |
ClinGen ESP ExAC |
|
|
rs1400966948 CA400461227 |
211 | V>A | No |
ClinGen gnomAD |
|
|
CA292242062 rs1021050144 |
212 | E>K | No |
ClinGen TOPMed |
|
|
CA400461349 rs1555645770 |
225 | R>K | No |
ClinGen Ensembl |
|
|
rs754590856 CA8687611 |
235 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1598406706 CA400462688 |
236 | M>L | No |
ClinGen Ensembl |
|
|
CA8687612 rs780702707 |
238 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs140867448 CA8687613 |
239 | S>A | No |
ClinGen ESP ExAC gnomAD |
|
| TCGA novel | 241 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292245508 rs571290585 |
250 | R>Q | No |
ClinGen 1000Genomes gnomAD |
|
|
CA8687617 rs771453009 |
254 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA400463048 rs1474474010 |
265 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
CA8687618 rs774431992 |
266 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1001134677 CA292245513 |
271 | V>I | No |
ClinGen TOPMed |
|
|
rs1398570415 CA400465282 |
281 | Y>C | No |
ClinGen gnomAD |
|
| TCGA novel | 283 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs746449014 CA8687637 |
285 | S>N | No |
ClinGen ExAC |
|
| TCGA novel | 287 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687638 rs772026101 |
293 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA400465460 rs1448018728 |
302 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs202199184 CA292249059 |
302 | D>H | No |
ClinGen Ensembl |
|
|
rs780210629 CA400465464 |
303 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs780210629 CA8687640 |
303 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA292249070 rs775181311 |
308 | Y>C | No |
ClinGen Ensembl |
|
|
CA292249080 rs139366904 |
313 | S>T | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1251097477 CA400465623 |
316 | L>F | No |
ClinGen gnomAD |
|
|
rs1467939594 CA400465634 |
317 | W>* | No |
ClinGen gnomAD |
|
|
rs1179075649 CA400465663 |
319 | M>T | No |
ClinGen gnomAD |
|
|
rs770814597 CA400465689 |
321 | P>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8687645 rs770814597 |
321 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292249085 rs17855093 VAR_070430 |
322 | P>Q | No |
ClinGen UniProt Ensembl dbSNP |
|
|
CA400465711 rs1157616828 |
323 | Q>R | No |
ClinGen gnomAD |
|
|
CA400465725 rs1416174213 |
324 | D>G | No |
ClinGen Ensembl |
|
|
rs1413994982 CA400465738 |
325 | A>G | No |
ClinGen gnomAD |
|
|
rs1216368028 CA400465772 |
328 | M>I | No |
ClinGen TOPMed |
|
|
CA8687647 rs368245993 |
328 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA292249092 rs750916276 |
330 | Q>H | No |
ClinGen Ensembl |
|
|
CA400465808 rs1448132327 |
331 | D>E | No |
ClinGen gnomAD |
|
|
rs766897332 CA292249096 |
331 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA8687648 rs766897332 |
331 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs766028472 CA292249100 |
331 | D>V | No |
ClinGen Ensembl |
|
|
CA292249106 rs754743435 |
332 | Q>H | No |
ClinGen Ensembl |
|
|
rs753383675 CA292249103 |
332 | Q>K | No |
ClinGen gnomAD |
|
|
rs1385523890 CA400465824 |
333 | E>K | No |
ClinGen gnomAD |
|
|
rs778434421 CA292249108 |
333 | E>V | No |
ClinGen Ensembl |
|
|
CA8687649 rs752226759 |
334 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400465836 rs1285008664 |
334 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 336 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs760265190 CA8687650 |
337 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1385064046 CA400465897 |
339 | M>K | No |
ClinGen gnomAD |
|
|
CA292208659 rs202110237 |
340 | G>D | No |
ClinGen Ensembl |
|
| TCGA novel | 341 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs774231682 CA8687664 |
342 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs1486488567 CA400449842 |
343 | G>V | No |
ClinGen gnomAD |
|
|
CA400449850 rs1256300367 |
344 | Q>K | No |
ClinGen gnomAD |
|
|
CA8687667 rs201874696 |
346 | C>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA400450171 rs1371874151 |
353 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
rs150055145 CA8687668 |
353 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs113484541 CA292208672 |
355 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8687669 rs145410676 |
357 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs753470217 CA8687670 |
357 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1429799869 CA400450459 |
360 | Q>H | No |
ClinGen gnomAD |
|
|
rs761570033 CA8687671 |
361 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1361336223 CA400450510 |
362 | M>V | No |
ClinGen gnomAD |
|
|
CA400450602 rs1316246346 |
364 | R>* | No |
ClinGen gnomAD |
|
|
CA400450628 rs1294900106 |
364 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs201423110 CA292208677 |
365 | A>G | No |
ClinGen Ensembl |
|
|
rs1044096738 CA292208689 |
368 | T>A | No |
ClinGen TOPMed |
|
|
rs765467232 CA8687672 |
370 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs148601685 CA292208701 |
371 | I>M | No |
ClinGen ESP |
|
|
CA8687673 rs750809450 |
371 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687674 rs769045498 |
373 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8687675 rs61739281 |
376 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs752168086 CA8687676 |
379 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 380 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781460776 CA8687678 |
381 | N>S | No |
ClinGen ExAC gnomAD |
|
|
RCV000864651 rs200854056 CA8687677 |
381 | N>Y | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA400451120 rs1259020198 |
382 | Q>R | No |
ClinGen gnomAD |
|
|
CA400451157 rs1439768047 |
384 | N>D | No |
ClinGen Ensembl |
|
|
CA292208729 rs941722464 |
385 | F>L | No |
ClinGen Ensembl |
|
|
rs375192740 CA8687680 |
386 | T>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1258033637 CA400451252 |
387 | N>D | No |
ClinGen TOPMed |
|
|
CA8687681 rs778516032 |
387 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400451315 rs1480168452 |
388 | E>D | No |
ClinGen TOPMed |
|
|
rs1173359131 CA400451384 |
391 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA8687683 rs771831676 |
393 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400451461 rs1271913502 |
396 | T>I | No |
ClinGen TOPMed |
|
|
RCV001008869 rs1598413522 |
397 | D>missing | No |
ClinVar dbSNP |
|
|
CA292208748 rs908830790 |
397 | D>E | No |
ClinGen TOPMed |
|
|
CA400451492 rs1384337634 |
398 | S>N | No |
ClinGen gnomAD |
|
|
CA400451507 rs1387369120 |
399 | P>S | No |
ClinGen gnomAD |
|
|
rs140305993 CA8687684 |
401 | Y>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs768126695 CA8687686 |
404 | Q>E | No |
ClinGen ExAC |
|
|
rs1555648558 RCV000598946 |
405 | E>missing | No |
ClinVar dbSNP |
|
|
RCV000523332 rs747947002 |
405 | E>missing | No |
ClinVar dbSNP |
|
|
CA292208752 rs900790067 |
406 | T>A | No |
ClinGen Ensembl |
|
|
CA8687688 rs776154258 |
406 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs764943941 CA8687690 |
407 | C>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 407 | C>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1393870150 CA400451758 |
414 | C>R | No |
ClinGen TOPMed |
|
|
CA8687693 rs766897961 |
415 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752080104 CA8687694 |
416 | T>I | No |
ClinGen ExAC gnomAD |
|
|
RCV000627498 rs1555648570 |
417 | P>missing | No |
ClinVar dbSNP |
|
| TCGA novel | 417 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687695 rs548776023 |
418 | P>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1598415386 CA400455976 |
423 | E>G | No |
ClinGen Ensembl |
|
|
rs2031551570 RCV001240697 |
424 | E>missing | No |
ClinVar dbSNP |
|
|
CA292211862 rs780886952 |
424 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687747 rs780886952 |
424 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2031551625 RCV001091454 |
425 | D>missing | No |
ClinVar dbSNP |
|
|
rs2031551741 RCV001091455 |
426 | P>missing | No |
ClinVar dbSNP |
|
|
rs1567979385 CA400456079 |
427 | W>G | No |
ClinGen Ensembl |
|
|
CA400456067 rs1567979385 |
427 | W>R | No |
ClinGen Ensembl |
|
|
rs868552586 CA292211881 |
428 | P>T | No |
ClinGen Ensembl |
|
|
CA8687750 rs752639113 |
429 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292211907 rs900497056 |
432 | S>F | No |
ClinGen Ensembl |
|
|
rs1555649011 RCV000520990 |
433 | K>missing | No |
ClinVar dbSNP |
|
|
rs1567979398 CA400456251 |
433 | K>E | No |
ClinGen Ensembl |
|
|
rs1413528897 CA400456357 |
435 | H>P | No |
ClinGen gnomAD |
|
|
rs1413528897 CA400456346 |
435 | H>R | No |
ClinGen gnomAD |
|
|
CA8687751 rs756026319 |
436 | I>T | No |
ClinGen ExAC gnomAD |
|
| rs1188388037 | 437 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687753 COSM1679984 rs777279856 |
441 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8687752 rs777279856 |
441 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687754 COSM1221702 rs770633028 |
441 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1372308540 CA400456544 |
443 | N>S | No |
ClinGen gnomAD |
|
|
CA8687759 rs775750934 |
446 | S>* | No |
ClinGen ExAC gnomAD |
|
|
CA292211966 rs955285721 |
446 | S>A | No |
ClinGen Ensembl |
|
|
CA400456618 rs1315208220 |
447 | E>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs769061997 CA8687761 |
447 | E>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs376935453 CA8687760 |
447 | E>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs149207898 CA292211993 |
448 | N>D | No |
ClinGen 1000Genomes |
|
|
rs200334649 CA8687763 |
448 | N>I | No |
ClinGen 1000Genomes TOPMed |
|
|
COSM301389 rs200334649 CA8687762 |
448 | N>S | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes TOPMed |
| rs758630849 | 450 | L>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1163049039 CA400456679 |
450 | L>* | No |
ClinGen TOPMed |
|
| rs758630849 | 450 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687765 rs777184643 |
450 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA8687767 rs765346414 |
453 | S>* | No |
ClinGen ExAC gnomAD |
|
|
rs765346414 CA400456740 |
453 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA400456749 rs1474397743 |
454 | A>S | No |
ClinGen TOPMed |
|
|
rs1259904965 CA400456782 |
456 | I>V | No |
ClinGen TOPMed |
|
| TCGA novel | 457 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773389405 CA8687768 |
458 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA400456816 rs773389405 |
458 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292212019 COSM1384958 rs371199697 |
458 | R>Q | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP TOPMed |
|
rs763192608 CA400456844 CA8687769 |
459 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400456853 rs1206711487 |
460 | N>H | No |
ClinGen TOPMed |
|
|
CA400456856 rs1567979467 |
460 | N>T | No |
ClinGen Ensembl |
|
| TCGA novel | 461 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1409622824 CA400456885 |
462 | Q>R | No |
ClinGen gnomAD |
|
|
CA400456891 rs1309190078 |
463 | G>R | No |
ClinGen TOPMed |
|
|
rs1598415473 CA400456924 |
466 | I>L | No |
ClinGen Ensembl |
|
|
CA292212062 rs572271446 |
466 | I>T | No |
ClinGen gnomAD |
|
|
CA8687773 rs752448334 |
467 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs752448334 CA8687772 |
467 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA8687771 rs752448334 |
467 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs375975790 CA400456958 CA8687776 |
468 | S>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA8687777 rs375975790 |
468 | S>L | No |
ClinGen ESP ExAC gnomAD |
|
|
rs756806603 CA400456953 |
468 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA8687775 rs756806603 |
468 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA8687779 rs377665493 |
470 | D>N | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1294866336 CA400457015 |
471 | P>S | No |
ClinGen TOPMed |
|
|
rs1273860596 CA400457060 |
473 | P>S | No |
ClinGen gnomAD |
|
|
rs747326663 CA8687784 |
474 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747326663 CA400457074 |
474 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1415073333 RCV001008314 |
475 | E>missing | No |
ClinVar dbSNP |
|
|
CA400457121 rs1296018768 |
476 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA292212168 rs979165981 |
477 | N>I | No |
ClinGen Ensembl |
|
|
rs966546906 CA292212152 |
477 | N>Y | No |
ClinGen Ensembl |
|
|
TCGA novel COSM98068 rs146477590 CA8687787 |
478 | C>* | upper_aerodigestive_tract urinary_tract breast Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD NCI-TCGA |
| TCGA novel | 478 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV000863106 rs142406693 CA8687788 |
479 | A>T | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
RCV000509453 rs769754801 |
480 | K>* | No |
ClinVar dbSNP |
|
|
rs773313597 CA8687793 |
482 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 483 | T>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 483 | T>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV001091456 rs773913732 |
484 | L>missing | No |
ClinVar dbSNP |
|
|
CA400457374 rs766524048 RCV000578583 |
484 | L>* | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
CA8687797 rs766524048 |
484 | L>S | No |
ClinGen ExAC gnomAD |
|
|
CA400457428 rs1567979558 |
486 | I>M | No |
ClinGen Ensembl |
|
|
CA400457419 rs1179037486 |
486 | I>V | No |
ClinGen TOPMed |
|
|
rs774692754 CA8687799 |
487 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400457438 rs1357461437 |
488 | D>N | No |
ClinGen gnomAD |
|
|
CA8687800 rs760381560 |
488 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs374024218 CA292212255 |
489 | S>C | No |
ClinGen Ensembl |
|
|
CA292212269 rs374024218 |
489 | S>F | No |
ClinGen Ensembl |
|
|
CA8687802 rs764019284 |
491 | N>D | No |
ClinGen ExAC TOPMed |
|
|
rs35491690 RCV001528509 RCV000250844 CA8687803 |
496 | I>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs542670520 CA292212277 |
499 | V>M | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA8687804 RCV000860824 rs61757742 |
501 | T>A | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA8687805 rs61757742 |
501 | T>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA400457675 rs1567979583 |
502 | N>K | No |
ClinGen Ensembl |
|
|
CA8687808 CA400457692 rs375618423 |
503 | S>* | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1185103543 CA400457717 |
505 | N>D | No |
ClinGen gnomAD |
|
|
rs1227160544 CA400457749 |
506 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1476011414 CA400457785 |
508 | M>I | No |
ClinGen gnomAD |
|
|
rs368204511 CA8687811 |
509 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA400457790 rs368204511 |
509 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1710574 CA292212369 rs372024236 |
510 | Q>* | Variant assessed as Somatic; impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8687815 rs372024236 |
510 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs763475304 | 512 | N>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1221704 rs781561779 CA8687816 |
512 | N>K | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
| rs763475304 | 512 | N>K | Variant assessed as Somatic; 4.621e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1567979615 CA400457904 |
512 | N>Y | No |
ClinGen Ensembl |
|
|
CA8687817 rs202221678 |
513 | L>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1484390133 CA400457961 |
514 | K>R | No |
ClinGen gnomAD |
|
|
COSM1172446 CA8687818 rs770291979 |
515 | M>V | oesophagus [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs772936724 CA292212428 CA400458013 |
516 | S>* | No |
ClinGen gnomAD |
|
|
RCV000862706 rs140786757 CA8687819 |
517 | T>I | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
| TCGA novel | 517 | T>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400458052 rs1397318801 |
518 | P>A | No |
ClinGen TOPMed |
|
|
CA8687820 rs749315458 |
520 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs774404279 CA8687822 |
521 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 523 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8687826 rs564827577 |
527 | E>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs564827577 CA8687825 |
527 | E>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA400458355 rs1174606433 |
529 | T>I | No |
ClinGen gnomAD |
|
|
rs900624074 CA292212524 |
530 | P>L | No |
ClinGen Ensembl |
|
|
rs765276046 CA8687831 |
532 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8687832 rs776814560 |
533 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs996571214 CA292212547 |
533 | N>K | No |
ClinGen TOPMed |
|
|
rs746727129 CA8687834 |
536 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1472771813 CA400458545 |
538 | L>* | No |
ClinGen gnomAD |
|
|
rs1254993767 CA400458556 |
539 | E>* | No |
ClinGen gnomAD |
|
|
CA8687836 rs751126916 |
540 | E>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA400458585 rs1008117441 |
540 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA627146053 rs1362893116 |
540 | E>G | No |
ClinGen gnomAD |
|
|
rs751126916 CA8687837 |
540 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400458597 rs1302141654 |
541 | S>C | No |
ClinGen TOPMed |
|
|
CA400458593 rs1317124061 |
541 | S>P | No |
ClinGen TOPMed |
|
|
CA8687838 rs781469973 |
542 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753075027 CA8687839 |
543 | S>C | No |
ClinGen ExAC |
|
|
rs1194694298 RCV000520616 |
546 | L>missing | No |
ClinVar dbSNP |
|
|
rs778248039 CA8687841 |
546 | L>P | No |
ClinGen ExAC gnomAD |
|
| rs1194694298 | 546 | L>P | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1383306871 CA400458633 |
547 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| TCGA novel | 548 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1598415716 CA400458648 |
548 | K>T | No |
ClinGen Ensembl |
|
|
CA8687843 rs749840560 |
550 | H>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400458690 rs1455439277 |
550 | H>R | No |
ClinGen gnomAD |
|
|
rs760201595 CA400458724 |
552 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs760201595 CA292212648 COSM982227 |
552 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA8687846 rs746035074 |
554 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA292212655 rs966517004 |
554 | G>V | No |
ClinGen Ensembl |
|
|
rs1384795929 CA400458800 |
557 | R>* | No |
ClinGen gnomAD |
|
|
CA8687847 rs201236946 |
557 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8687848 rs373778062 |
559 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373778062 CA400458838 |
559 | S>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA400458854 rs1199439973 |
560 | G>D | No |
ClinGen TOPMed |
|
|
rs761683250 CA8687849 |
560 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs367580990 CA292212667 |
564 | A>P | No |
ClinGen ESP TOPMed |
|
|
CA8687851 rs769755202 |
564 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1275528692 CA400458952 |
566 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1275528692 CA400458950 |
566 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1487712457 CA400458962 |
567 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1485992765 CA400458987 |
568 | T>R | No |
ClinGen TOPMed |
|
|
CA8687853 rs200713699 |
569 | T>A | No |
ClinGen 1000Genomes ExAC |
|
|
COSM982228 rs1179832290 CA400459048 |
572 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs1567979796 CA400459055 |
573 | K>E | No |
ClinGen Ensembl |
|
|
CA8687857 rs751087700 |
574 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA400459102 rs1000741337 |
575 | S>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 575 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292212704 rs1000741337 |
575 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs372286382 CA8687858 |
576 | V>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767144872 CA8687859 |
577 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs980439473 CA292212723 |
578 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA400459162 rs1598415782 |
579 | T>I | No |
ClinGen Ensembl |
|
|
rs747668756 CA292212748 |
581 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs200809297 CA292212753 |
581 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs149137187 CA8687862 |
582 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8687864 rs757812369 |
584 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1311240894 CA400459274 |
587 | Q>E | No |
ClinGen TOPMed |
|
|
rs778789953 CA8687865 |
588 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA292212778 rs201593602 |
589 | K>T | No |
ClinGen TOPMed gnomAD |
|
|
rs990976956 CA292212783 |
592 | N>T | No |
ClinGen Ensembl |
|
|
CA292212784 rs867112527 |
593 | P>L | No |
ClinGen Ensembl |
|
|
CA8687866 rs745970309 |
595 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA400459337 rs1167387674 |
596 | H>Q | No |
ClinGen TOPMed |
|
|
rs199612954 CA8687867 |
596 | H>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA292212785 rs541664685 |
596 | H>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8687868 rs780415902 |
598 | H>R | No |
ClinGen ExAC gnomAD |
|
| rs745470366 | 603 | C>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400459385 rs1421958284 |
603 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA8687871 rs373494001 |
605 | C>W | No |
ClinGen ESP ExAC gnomAD |
|
|
rs770363461 CA292212807 |
605 | C>Y | No |
ClinGen gnomAD |
|
|
rs773093773 CA8687872 |
606 | C>R | No |
ClinGen ExAC gnomAD |
3 associated diseases with O15297
[MIM: 617450]: Jansen-de Vries syndrome (JDVS)
An autosomal dominant neurodevelopmental disorder characterized by mild to severe intellectual disability, psychomotor developmental delay, speech delay, and behavioral manifestations including attention deficit-hyperactivity disorder, autism and anxiety disorders. Most patients have variable additional features, including feeding and gastrointestinal difficulties, high pain threshold, hypersensitivity to sound, hypotonia, broad-based gait, and dysmorphic features, including mild facial abnormalities, strabismus, and small hands and feet. {ECO:0000269|PubMed:28343630}. Note=The disease is caused by variants affecting the gene represented in this entry.
[MIM: 114480]: Breast cancer (BC)
A common malignancy originating from breast epithelial tissue. Breast neoplasms can be distinguished by their histologic pattern. Invasive ductal carcinoma is by far the most common type. Breast cancer is etiologically and genetically heterogeneous. Important genetic factors have been indicated by familial occurrence and bilateral involvement. Mutations at more than one locus can be involved in different families or even in the same case. {ECO:0000269|PubMed:23242139}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
[MIM: 167000]: Ovarian cancer (OC)
The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease. {ECO:0000269|PubMed:23242139}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant neurodevelopmental disorder characterized by mild to severe intellectual disability, psychomotor developmental delay, speech delay, and behavioral manifestations including attention deficit-hyperactivity disorder, autism and anxiety disorders. Most patients have variable additional features, including feeding and gastrointestinal difficulties, high pain threshold, hypersensitivity to sound, hypotonia, broad-based gait, and dysmorphic features, including mild facial abnormalities, strabismus, and small hands and feet. {ECO:0000269|PubMed:28343630}. Note=The disease is caused by variants affecting the gene represented in this entry.
- A common malignancy originating from breast epithelial tissue. Breast neoplasms can be distinguished by their histologic pattern. Invasive ductal carcinoma is by far the most common type. Breast cancer is etiologically and genetically heterogeneous. Important genetic factors have been indicated by familial occurrence and bilateral involvement. Mutations at more than one locus can be involved in different families or even in the same case. {ECO:0000269|PubMed:23242139}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
- The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease. {ECO:0000269|PubMed:23242139}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Functions
| Description | ||
|---|---|---|
| EC Number | 3.1.3.16 | Phosphoric monoester hydrolases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| metal ion binding | Binding to a metal ion. |
| mitogen-activated protein kinase binding | Binding to a mitogen-activated protein kinase. |
| myosin phosphatase activity | Catalysis of the reaction: phosphomyosin + H2O = myosin + phosphate. |
| protein serine/threonine kinase activity | Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. |
| protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. |
12 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to starvation | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. |
| DNA damage response, signal transduction by p53 class mediator | A cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage. |
| DNA methylation | The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine. |
| G2/M transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex. |
| heterochromatin assembly | An epigenetic gene silencing mechanism in which chromatin is compacted into heterochromatin, resulting in a chromatin conformation refractory to transcription. This process starts with heterochromatin nucleation, its spreading, and ends with heterochromatin boundary formation. |
| negative regulation of cell population proliferation | Any process that stops, prevents or reduces the rate or extent of cell proliferation. |
| negative regulation of gene expression, epigenetic | An epigenetic process that silences gene expression at specific genomic regions through chromatin remodelling either by modifying higher order chromatin fiber structure, nucleosomal histones, or the DNA. |
| peptidyl-threonine dephosphorylation | The removal of phosphoric residues from peptidyl-O-phospho-L-threonine to form peptidyl-threonine. |
| protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
| regulation of transcription initiation by RNA polymerase II | Any process that modulates the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter. |
| response to bacterium | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. |
| response to radiation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation. |
38 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| A5PJZ2 | PPM1L | Protein phosphatase 1L | Bos taurus (Bovine) | PR |
| P49593 | PPM1F | Protein phosphatase 1F | Homo sapiens (Human) | PR |
| Q5SGD2 | PPM1L | Protein phosphatase 1L | Homo sapiens (Human) | PR |
| Q8N819 | PPM1N | Probable protein phosphatase 1N | Homo sapiens (Human) | PR |
| Q8CGA0 | Ppm1f | Protein phosphatase 1F | Mus musculus (Mouse) | PR |
| Q8BHN0 | Ppm1l | Protein phosphatase 1L | Mus musculus (Mouse) | PR |
| Q80TL0 | Ppm1e | Protein phosphatase 1E | Mus musculus (Mouse) | PR |
| Q5JKN1 | Os01g0552300 | Probable protein phosphatase 2C 5 | Oryza sativa subsp japonica (Rice) | PR |
| Q6K5I0 | Os02g0600000 | Probable protein phosphatase 2C 20 | Oryza sativa subsp japonica (Rice) | PR |
| Q7XHN8 | Os07g0114000 | Probable protein phosphatase 2C 61 | Oryza sativa subsp japonica (Rice) | PR |
| Q2QN36 | Os12g0580900 | Probable protein phosphatase 2C 78 | Oryza sativa subsp japonica (Rice) | PR |
| Q6ZHC8 | Os02g0685600 | Probable protein phosphatase 2C 25 | Oryza sativa subsp japonica (Rice) | PR |
| Q6ZKL8 | Os08g0500300 | Probable protein phosphatase 2C 66 | Oryza sativa subsp japonica (Rice) | PR |
| Q7XW27 | Os04g0321800 | Probable protein phosphatase 2C 38 | Oryza sativa subsp japonica (Rice) | PR |
| Q5SN75 | Os01g0656200 | Probable protein phosphatase 2C 8 | Oryza sativa subsp japonica (Rice) | PR |
| Q6L482 | Os05g0358500 | Probable protein phosphatase 2C 48 | Oryza sativa subsp japonica (Rice) | PR |
| Q6L4R7 | PP2C53 | Protein phosphatase 2C 53 | Oryza sativa subsp japonica (Rice) | PR |
| Q0JLP9 | PP2C06 | Probable protein phosphatase 2C 6 | Oryza sativa subsp japonica (Rice) | PR |
| Q9LMT1 | At1g18030 | Probable protein phosphatase 2C 8 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O81716 | PPC4-2 | Probable protein phosphatase 2C 21 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LDA7 | At3g15260 | Probable protein phosphatase 2C 39 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q3EAZ3 | At3g27140 | Putative protein phosphatase 2C-like protein 45 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SD02 | At3g51470 | Probable protein phosphatase 2C 47 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P49599 | PPH1 | Protein phosphatase 2C 57 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q94AT1 | At5g53140 | Probable protein phosphatase 2C 76 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O81760 | PP2C63 | Probable protein phosphatase 2C 63 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q501F9 | PP2C67 | Probable protein phosphatase 2C 67 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q94CL8 | PP2C6 | Probable protein phosphatase 2C 48 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LHJ9 | PP2C38 | Probable protein phosphatase 2C 38 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8GY60 | At4g03415 | Probable protein phosphatase 2C 52 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FG61 | At5g36250 | Probable protein phosphatase 2C 74 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FIF5 | SAG113 | Probable protein phosphatase 2C 78 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8VZN9 | At1g43900 | Probable protein phosphatase 2C 11 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LNP9 | HAB2 | Protein phosphatase 2C 7 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O04719 | ABI2 | Protein phosphatase 2C 77 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9CAJ0 | HAB1 | Protein phosphatase 2C 16 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LRZ4 | At3g16800 | Probable protein phosphatase 2C 41 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q84JD5 | PP2C68 | Probable protein phosphatase 2C 68 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAGLYSLGVS | VFSDQGGRKY | MEDVTQIVVE | PEPTAEEKPS | PRRSLSQPLP | PRPSPAALPG |
| 70 | 80 | 90 | 100 | 110 | 120 |
| GEVSGKGPAV | AAREARDPLP | DAGASPAPSR | CCRRRSSVAF | FAVCDGHGGR | EAAQFAREHL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| WGFIKKQKGF | TSSEPAKVCA | AIRKGFLACH | LAMWKKLAEW | PKTMTGLPST | SGTTASVVII |
| 190 | 200 | 210 | 220 | 230 | 240 |
| RGMKMYVAHV | GDSGVVLGIQ | DDPKDDFVRA | VEVTQDHKPE | LPKERERIEG | LGGSVMNKSG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VNRVVWKRPR | LTHNGPVRRS | TVIDQIPFLA | VARALGDLWS | YDFFSGEFVV | SPEPDTSVHT |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LDPQKHKYII | LGSDGLWNMI | PPQDAISMCQ | DQEEKKYLMG | EHGQSCAKML | VNRALGRWRQ |
| 370 | 380 | 390 | 400 | 410 | 420 |
| RMLRADNTSA | IVICISPEVD | NQGNFTNEDE | LYLNLTDSPS | YNSQETCVMT | PSPCSTPPVK |
| 430 | 440 | 450 | 460 | 470 | 480 |
| SLEEDPWPRV | NSKDHIPALV | RSNAFSENFL | EVSAEIAREN | VQGVVIPSKD | PEPLEENCAK |
| 490 | 500 | 510 | 520 | 530 | 540 |
| ALTLRIHDSL | NNSLPIGLVP | TNSTNTVMDQ | KNLKMSTPGQ | MKAQEIERTP | PTNFKRTLEE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| SNSGPLMKKH | RRNGLSRSSG | AQPASLPTTS | QRKNSVKLTM | RRRLRGQKKI | GNPLLHQHRK |
| TVCVC |