Q9M2C8
PR
Gene name |
At3g61360 (T20K12.260) |
Protein name |
Pentatricopeptide repeat-containing protein At3g61360 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G61360 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9M2C8
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9M2C8-F1 | Predicted | AlphaFoldDB |
38 variants for Q9M2C8
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_3_22706095_C_A | 11 | R>L | No | 1000Genomes | |
| tmp_3_22706059_G_A | 23 | S>F | No | 1000Genomes | |
| tmp_3_22706020_C_T | 36 | R>H | No | 1000Genomes | |
| ENSVATH00430761 | 43 | G>D | No | 1000Genomes | |
| ENSVATH02534015 | 60 | P>A | No | 1000Genomes | |
| ENSVATH06354763 | 87 | L>F | No | 1000Genomes | |
| ENSVATH06354762 | 91 | K>Q | No | 1000Genomes | |
| tmp_3_22705840_C_T | 96 | S>N | No | 1000Genomes | |
| tmp_3_22705769_C_T | 120 | D>N | No | 1000Genomes | |
| tmp_3_22705625_C_T | 168 | E>K | No | 1000Genomes | |
| ENSVATH12868239 | 171 | R>K | No | 1000Genomes | |
| tmp_3_22705540_C_T | 196 | R>K | No | 1000Genomes | |
| ENSVATH14465132 | 201 | K>N | No | 1000Genomes | |
| ENSVATH14465131 | 202 | L>F | No | 1000Genomes | |
| ENSVATH06354760 | 209 | D>N | No | 1000Genomes | |
| ENSVATH12868238 | 222 | E>V | No | 1000Genomes | |
| ENSVATH00430757 | 233 | Y>F | No | 1000Genomes | |
| ENSVATH00430756 | 242 | K>Q | No | 1000Genomes | |
| ENSVATH12868237 | 244 | N>T | No | 1000Genomes | |
| ENSVATH06354758 | 268 | F>Y | No | 1000Genomes | |
| ENSVATH00430755 | 274 | L>P | No | 1000Genomes | |
| tmp_3_22705303_T_A | 275 | D>V | No | 1000Genomes | |
| tmp_3_22705289_C_A | 280 | V>L | No | 1000Genomes | |
| ENSVATH06354755 | 307 | S>P | No | 1000Genomes | |
| tmp_3_22705164_C_A | 321 | L>F | No | 1000Genomes | |
| tmp_3_22705139_C_A | 330 | D>Y | No | 1000Genomes | |
| tmp_3_22705113_C_T | 338 | M>I | No | 1000Genomes | |
| ENSVATH12868235 | 369 | N>I | No | 1000Genomes | |
| tmp_3_22704985_C_T | 381 | R>K | No | 1000Genomes | |
| tmp_3_22704962_T_A | 389 | T>S | No | 1000Genomes | |
| ENSVATH02534013 | 390 | I>V | No | 1000Genomes | |
| tmp_3_22704921_T_A | 402 | E>D | No | 1000Genomes | |
| ENSVATH12868203 | 474 | K>E | No | 1000Genomes | |
| ENSVATH02534011 | 481 | E>G | No | 1000Genomes | |
| ENSVATH06354749 | 487 | H>R | No | 1000Genomes | |
| ENSVATH06354748 | 489 | F>V | No | 1000Genomes | |
| ENSVATH02534010 | 495 | I>T | No | 1000Genomes | |
| ENSVATH02534009 | 498 | M>I | No | 1000Genomes |
No associated diseases with Q9M2C8
5 regional properties for Q9M2C8
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| repeat | Pentatricopeptide repeat | 179 - 205 | IPR002885-1 |
| repeat | Pentatricopeptide repeat | 208 - 278 | IPR002885-2 |
| repeat | Pentatricopeptide repeat | 284 - 311 | IPR002885-3 |
| repeat | Pentatricopeptide repeat | 313 - 361 | IPR002885-4 |
| repeat | Pentatricopeptide repeat | 386 - 420 | IPR002885-5 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| mRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
25 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9C7F1 | At1g28020 | Putative pentatricopeptide repeat-containing protein At1g28020 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9C545 | At1g43010 | Putative pentatricopeptide repeat-containing protein At1g43010 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9CA73 | PCMP-E68 | Putative pentatricopeptide repeat-containing protein At1g74400 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8GW57 | At1g80150 | Pentatricopeptide repeat-containing protein At1g80150, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q56XX3 | At2g02148 | Uncharacterized protein At2g02148 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9ZU67 | At2g18520 | Pentatricopeptide repeat-containing protein At2g18520, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8S8Q7 | PCMP-H25 | Pentatricopeptide repeat-containing protein At2g34370, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8L6Y7 | At2g38420 | Pentatricopeptide repeat-containing protein At2g38420, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M891 | At3g02490 | Pentatricopeptide repeat-containing protein At3g02490, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LK58 | At3g13150 | Pentatricopeptide repeat-containing protein At3g13150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LZP3 | At3g62470 | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q3EAF8 | At3g62540 | Pentatricopeptide repeat-containing protein At3g62540, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8L838 | COG4 | Conserved oligomeric Golgi complex subunit 4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M4P3 | DYW10 | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SVH3 | At4g20740 | Pentatricopeptide repeat-containing protein At4g20740 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O49711 | At4g21880 | Pentatricopeptide repeat-containing protein At4g21880, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SZL5 | At4g38150 | Pentatricopeptide repeat-containing protein At4g38150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LZ19 | PCMP-H16 | Pentatricopeptide repeat-containing protein At5g04780, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LEQ7 | At5g14820 | Pentatricopeptide repeat-containing protein At5g14820, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LXF4 | At5g15280 | Pentatricopeptide repeat-containing protein At5g15280, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FLJ6 | At5g61370 | Pentatricopeptide repeat-containing protein At5g61370, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FJY7 | PCMP-H61 | Pentatricopeptide repeat-containing protein At5g66520 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P0C894 | At2g02150 | Putative pentatricopeptide repeat-containing protein At2g02150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q3ECH5 | At1g66345 | Pentatricopeptide repeat-containing protein At1g66345, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LFQ4 | At5g15010 | Pentatricopeptide repeat-containing protein At5g15010, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MLQKISSDSY | RRLLAPVLSS | SSSLSSTSIN | RTEIERITII | INGHPFPNHP | IQPILAKHIP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LSSLSPEFVS | EVLGRLFAAH | SNGLKALEFF | KYSLKSSKSS | PTSDSFEKTL | HILARMRYFD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QAWALMAEVR | KDYPNLLSFK | SMSILLCKIA | KFGSYEETLE | AFVKMEKEIF | RKKFGVDEFN |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ILLRAFCTER | EMKEARSIFE | KLHSRFNPDV | KTMNILLLGF | KEAGDVTATE | LFYHEMVKRG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| FKPNSVTYGI | RIDGFCKKRN | FGEALRLFED | MDRLDFDITV | QILTTLIHGS | GVARNKIKAR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| QLFDEISKRG | LTPDCGAYNA | LMSSLMKCGD | VSGAIKVMKE | MEEKGIEPDS | VTFHSMFIGM |
| 370 | 380 | 390 | 400 | 410 | 420 |
| MKSKEFGFNG | VCEYYQKMKE | RSLVPKTPTI | VMLMKLFCHN | GEVNLGLDLW | KYMLEKGYCP |
| 430 | 440 | 450 | 460 | 470 | 480 |
| HGHALELLTT | ALCARRRAND | AFECSWQTVE | RGRCVSEPVY | RMLETSLSSN | NELKKLEELK |
| 490 | |||||
| EEIQKLHSFL | PPPEIQLM |