Q9LZ19
PR
Gene name |
PCMP-H16 (At5g04780, MUK11.10, T1E3_140) |
Protein name |
Pentatricopeptide repeat-containing protein At5g04780, mitochondrial |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G04780 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9LZ19
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9LZ19-F1 | Predicted | AlphaFoldDB |
64 variants for Q9LZ19
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_5_1384634_G_A | 32 | S>N | No | 1000Genomes | |
| tmp_5_1384639_C_A | 34 | L>I | No | 1000Genomes | |
| ENSVATH03023680 | 36 | R>Q | No | 1000Genomes | |
| tmp_5_1384648_A_C | 37 | N>H | No | 1000Genomes | |
| tmp_5_1384727_T_C | 63 | L>S | No | 1000Genomes | |
| tmp_5_1384754_C_T | 72 | A>V | No | 1000Genomes | |
| ENSVATH13924533 | 82 | A>T | No | 1000Genomes | |
| tmp_5_1384788_C_G | 83 | C>W | No | 1000Genomes | |
| ENSVATH03023682 | 91 | D>E | No | 1000Genomes | |
| ENSVATH06922998 | 92 | L>F | No | 1000Genomes | |
| ENSVATH03023683 | 93 | E>Q | No | 1000Genomes | |
| ENSVATH03023684 | 94 | G>E | No | 1000Genomes | |
| ENSVATH03023685 | 99 | L>S | No | 1000Genomes | |
| tmp_5_1384847_T_C | 103 | I>T | No | 1000Genomes | |
| ENSVATH06922999 | 104 | N>D | No | 1000Genomes | |
| ENSVATH06923001 | 122 | M>I | No | 1000Genomes | |
| ENSVATH03023688 | 124 | E>D | No | 1000Genomes | |
| tmp_5_1384916_G_A | 126 | S>N | No | 1000Genomes | |
| tmp_5_1384985_T_C | 149 | I>T | No | 1000Genomes | |
| tmp_5_1384996_A_G | 153 | M>V | No | 1000Genomes | |
| tmp_5_1385020_A_G | 161 | S>G | No | 1000Genomes | |
| tmp_5_1385054_G_T | 172 | C>F | No | 1000Genomes | |
| ENSVATH06923002 | 191 | T>I | No | 1000Genomes | |
| ENSVATH06923003 | 192 | C>R | No | 1000Genomes | |
| tmp_5_1385117_T_C | 193 | I>T | No | 1000Genomes | |
| ENSVATH06923004 | 203 | L>F | No | 1000Genomes | |
| ENSVATH03023691 | 218 | Q>L | No | 1000Genomes | |
| ENSVATH13924534 | 222 | S>F | No | 1000Genomes | |
| ENSVATH10573999 | 242 | K>R | No | 1000Genomes | |
| ENSVATH06923005 | 250 | L>V | No | 1000Genomes | |
| ENSVATH13924585 | 252 | R>P | No | 1000Genomes | |
| ENSVATH06923006 | 254 | A>S | No | 1000Genomes | |
| ENSVATH10574000 | 277 | A>P | No | 1000Genomes | |
| ENSVATH06923007 | 283 | K>N | No | 1000Genomes | |
| ENSVATH06923008 | 297 | N>Y | No | 1000Genomes | |
| ENSVATH06923009 | 301 | A>S | No | 1000Genomes | |
| tmp_5_1385519_A_G | 327 | K>R | No | 1000Genomes | |
| ENSVATH00606860 | 336 | I>M | No | 1000Genomes | |
| ENSVATH03023692 | 344 | R>L | No | 1000Genomes | |
| tmp_5_1385573_C_A | 345 | P>H | No | 1000Genomes | |
| tmp_5_1385580_A_T | 347 | E>D | No | 1000Genomes | |
| ENSVATH06923010 | 351 | L>F | No | 1000Genomes | |
| ENSVATH06923011 | 367 | F>L | No | 1000Genomes | |
| ENSVATH06923012 | 377 | T>A | No | 1000Genomes | |
| tmp_5_1385677_G_C | 380 | V>L | No | 1000Genomes | |
| tmp_5_1385722_G_A | 395 | G>S | No | 1000Genomes | |
| ENSVATH03023694 | 398 | P>R | No | 1000Genomes | |
| ENSVATH06923015 | 424 | K>M | No | 1000Genomes | |
| tmp_5_1385897_T_C | 453 | V>A | No | 1000Genomes | |
| ENSVATH03023695 | 460 | E>K | No | 1000Genomes | |
| ENSVATH03023696 | 484 | E>K | No | 1000Genomes | |
| tmp_5_1385995_G_A | 486 | A>T | No | 1000Genomes | |
| tmp_5_1386015_A_C | 492 | L>F | No | 1000Genomes | |
| tmp_5_1386026_A_T | 496 | D>V | No | 1000Genomes | |
| tmp_5_1386060_C_G | 507 | D>E | No | 1000Genomes | |
| ENSVATH06923017 | 511 | K>N | No | 1000Genomes | |
| ENSVATH03023697 | 511 | K>R | No | 1000Genomes | |
| ENSVATH03023697 | 511 | K>T | No | 1000Genomes | |
| tmp_5_1386076_C_T | 513 | H>Y | No | 1000Genomes | |
| ENSVATH06923018 | 523 | P>L | No | 1000Genomes | |
| ENSVATH06923019 | 537 | I>N | No | 1000Genomes | |
| ENSVATH06923020 | 554 | D>N | No | 1000Genomes | |
| tmp_5_1386212_G_A | 558 | G>E | No | 1000Genomes | |
| ENSVATH03023698 | 577 | L>S | No | 1000Genomes |
No associated diseases with Q9LZ19
7 regional properties for Q9LZ19
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| repeat | Pentatricopeptide repeat | 95 - 127 | IPR002885-1 |
| repeat | Pentatricopeptide repeat | 126 - 172 | IPR002885-2 |
| repeat | Pentatricopeptide repeat | 196 - 226 | IPR002885-3 |
| repeat | Pentatricopeptide repeat | 227 - 261 | IPR002885-4 |
| repeat | Pentatricopeptide repeat | 328 - 423 | IPR002885-5 |
| domain | DYW domain | 543 - 635 | IPR032867 |
| repeat | E motif | 445 - 507 | IPR046848 |
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| zinc ion binding | Binding to a zinc ion (Zn). |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. |
25 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9C7F1 | At1g28020 | Putative pentatricopeptide repeat-containing protein At1g28020 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9C545 | At1g43010 | Putative pentatricopeptide repeat-containing protein At1g43010 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q3ECH5 | At1g66345 | Pentatricopeptide repeat-containing protein At1g66345, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9CA73 | PCMP-E68 | Putative pentatricopeptide repeat-containing protein At1g74400 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8GW57 | At1g80150 | Pentatricopeptide repeat-containing protein At1g80150, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q56XX3 | At2g02148 | Uncharacterized protein At2g02148 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P0C894 | At2g02150 | Putative pentatricopeptide repeat-containing protein At2g02150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9ZU67 | At2g18520 | Pentatricopeptide repeat-containing protein At2g18520, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8L6Y7 | At2g38420 | Pentatricopeptide repeat-containing protein At2g38420, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M891 | At3g02490 | Pentatricopeptide repeat-containing protein At3g02490, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LK58 | At3g13150 | Pentatricopeptide repeat-containing protein At3g13150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M2C8 | At3g61360 | Pentatricopeptide repeat-containing protein At3g61360 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LZP3 | At3g62470 | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q3EAF8 | At3g62540 | Pentatricopeptide repeat-containing protein At3g62540, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8L838 | COG4 | Conserved oligomeric Golgi complex subunit 4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M4P3 | DYW10 | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SVH3 | At4g20740 | Pentatricopeptide repeat-containing protein At4g20740 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O49711 | At4g21880 | Pentatricopeptide repeat-containing protein At4g21880, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SZL5 | At4g38150 | Pentatricopeptide repeat-containing protein At4g38150 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LEQ7 | At5g14820 | Pentatricopeptide repeat-containing protein At5g14820, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LFQ4 | At5g15010 | Pentatricopeptide repeat-containing protein At5g15010, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LXF4 | At5g15280 | Pentatricopeptide repeat-containing protein At5g15280, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FLJ6 | At5g61370 | Pentatricopeptide repeat-containing protein At5g61370, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FJY7 | PCMP-H61 | Pentatricopeptide repeat-containing protein At5g66520 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8S8Q7 | PCMP-H25 | Pentatricopeptide repeat-containing protein At2g34370, mitochondrial | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MLSPSLPRMN | ILGFTVNFLI | RCKVLPRRSN | TSSLSRNISV | LASYDQEEVS | PGRYSNEFSN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RNLVHEILQL | CARNGAVMEA | KACHGKIIRI | DLEGDVTLLN | VLINAYSKCG | FVELARQVFD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GMLERSLVSW | NTMIGLYTRN | RMESEALDIF | LEMRNEGFKF | SEFTISSVLS | ACGVNCDALE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| CKKLHCLSVK | TCIDLNLYVG | TALLDLYAKC | GMIKDAVQVF | ESMQDKSSVT | WSSMVAGYVQ |
| 250 | 260 | 270 | 280 | 290 | 300 |
| NKNYEEALLL | YRRAQRMSLE | QNQFTLSSVI | CACSNLAALI | EGKQMHAVIC | KSGFGSNVFV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| ASSAVDMYAK | CGSLRESYII | FSEVQEKNLE | LWNTIISGFA | KHARPKEVMI | LFEKMQQDGM |
| 370 | 380 | 390 | 400 | 410 | 420 |
| HPNEVTFSSL | LSVCGHTGLV | EEGRRFFKLM | RTTYGLSPNV | VHYSCMVDIL | GRAGLLSEAY |
| 430 | 440 | 450 | 460 | 470 | 480 |
| ELIKSIPFDP | TASIWGSLLA | SCRVYKNLEL | AEVAAEKLFE | LEPENAGNHV | LLSNIYAANK |
| 490 | 500 | 510 | 520 | 530 | 540 |
| QWEEIAKSRK | LLRDCDVKKV | RGKSWIDIKD | KVHTFSVGES | GHPRIREICS | TLDNLVIKFR |
| 550 | 560 | 570 | 580 | 590 | 600 |
| KFGYKPSVEH | ELHDVEIGKK | EELLMQHSEK | LALVFGLMCL | PESSPVRIMK | NLRICVDCHE |
| 610 | 620 | 630 | |||
| FMKAASMATR | RFIIVRDVNR | FHHFSDGHCS | CGDFW |