Q56WK6
PR
Gene name |
PATL1 (At1g72150, T9N14.1) |
Protein name |
Patellin-1 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G72150 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q56WK6
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q56WK6-F1 | Predicted | AlphaFoldDB |
41 variants for Q56WK6
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH05130197 | 9 | S>P | No | 1000Genomes | |
| tmp_1_27148600_G_C | 15 | A>P | No | 1000Genomes | |
| ENSVATH00138701 | 19 | K>T | No | 1000Genomes | |
| tmp_1_27148639_G_A | 28 | V>I | No | 1000Genomes | |
| tmp_1_27148690_T_C | 45 | S>P | No | 1000Genomes | |
| ENSVATH01524309 | 60 | E>D | No | 1000Genomes | |
| ENSVATH00138702 | 71 | S>P | No | 1000Genomes | |
| ENSVATH13795941 | 79 | V>I | No | 1000Genomes | |
| ENSVATH13795942 | 103 | L>R | No | 1000Genomes | |
| ENSVATH13795943 | 109 | N>D | No | 1000Genomes | |
| ENSVATH01524313 | 120 | V>A | No | 1000Genomes | |
| ENSVATH00138704 | 120 | V>L | No | 1000Genomes | |
| ENSVATH14471722 | 122 | E>D | No | 1000Genomes | |
| ENSVATH01524314 | 125 | T>P | No | 1000Genomes | |
| ENSVATH01524315 | 133 | E>G | No | 1000Genomes | |
| ENSVATH01524316 | 136 | E>G | No | 1000Genomes | |
| ENSVATH01524317 | 138 | E>V | No | 1000Genomes | |
| tmp_1_27149009_T_A | 151 | V>D | No | 1000Genomes | |
| ENSVATH01524318 | 158 | P>L | No | 1000Genomes | |
| ENSVATH05130202 | 160 | V>I | No | 1000Genomes | |
| ENSVATH01524319 | 163 | A>P | No | 1000Genomes | |
| ENSVATH01524320 | 164 | E>A | No | 1000Genomes | |
| tmp_1_27149059_T_G | 168 | S>A | No | 1000Genomes | |
| ENSVATH14471724 | 170 | E>D | No | 1000Genomes | |
| tmp_1_27149075_C_T | 173 | P>L | No | 1000Genomes | |
| ENSVATH13795949 | 177 | K>N | No | 1000Genomes | |
| tmp_1_27149130_G_T | 191 | E>D | No | 1000Genomes | |
| ENSVATH13795950 | 220 | A>V | No | 1000Genomes | |
| ENSVATH13795951 | 227 | E>D | No | 1000Genomes | |
| ENSVATH05130204 | 231 | V>I | No | 1000Genomes | |
| tmp_1_27149275_G_T | 240 | E>* | No | 1000Genomes | |
| tmp_1_27149299_C_T | 248 | P>S | No | 1000Genomes | |
| ENSVATH13795953 | 275 | T>A | No | 1000Genomes | |
| tmp_1_27149435_T_G | 293 | V>G | No | 1000Genomes | |
| tmp_1_27149585_G_A | 343 | S>N | No | 1000Genomes | |
| ENSVATH14471745 | 355 | A>T | No | 1000Genomes | |
| tmp_1_27150044_G_A | 433 | S>N | No | 1000Genomes | |
| tmp_1_27150275_C_G | 481 | P>A | No | 1000Genomes | |
| tmp_1_27150455_A_C | 509 | S>R | No | 1000Genomes | |
| ENSVATH13795957 | 517 | T>I | No | 1000Genomes | |
| tmp_1_27150516_C_T | 529 | T>I | No | 1000Genomes |
No associated diseases with Q56WK6
6 GO annotations of cellular component
| Name | Definition |
|---|---|
| apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| plasmodesma | A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. |
| vacuole | A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| lipid binding | Binding to a lipid. |
| protease binding | Binding to a protease or a peptidase. |
| salicylic acid binding | Binding to salicylic acid. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| cell cycle | The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division. |
| cell division | The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. |
| pollen tube growth | Growth of pollen via tip extension of the intine wall. |
26 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q5SYC1 | CLVS2 | Clavesin-2 | Homo sapiens (Human) | PR |
| Q9BTX7 | TTPAL | Alpha-tocopherol transfer protein-like | Homo sapiens (Human) | PR |
| Q92503 | SEC14L1 | SEC14-like protein 1 | Homo sapiens (Human) | PR |
| Q8IUQ0 | CLVS1 | Clavesin-1 | Homo sapiens (Human) | PR |
| Q9UDX3 | SEC14L4 | SEC14-like protein 4 | Homo sapiens (Human) | PR |
| B5MCN3 | SEC14L6 | Putative SEC14-like protein 6 | Homo sapiens (Human) | PR |
| Q8BG92 | Clvs2 | Clavesin-2 | Mus musculus (Mouse) | PR |
| Q9D4C9 | Clvs1 | Clavesin-1 | Mus musculus (Mouse) | PR |
| Q9D3D0 | Ttpal | Alpha-tocopherol transfer protein-like | Mus musculus (Mouse) | PR |
| Q8R0F9 | Sec14l4 | SEC14-like protein 4 | Mus musculus (Mouse) | PR |
| A6JFQ6 | Clvs1 | Clavesin-1 | Rattus norvegicus (Rat) | PR |
| A6JUQ6 | Clvs2 | Clavesin-2 | Rattus norvegicus (Rat) | PR |
| Q09270 | C34C12.6 | CRAL-TRIO domain-containing protein C34C12.6 | Caenorhabditis elegans | PR |
| Q8GXC6 | SFH5 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SIW3 | SFH7 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH7 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SI13 | SFH10 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| F4IHJ0 | SFH8 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q93ZE9 | SFH3 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| F4J7S8 | SFH9 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q94A34 | SFH12 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| F4JVA6 | SFH6 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q56Z59 | PATL3 | Patellin-3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q56ZI2 | PATL2 | Patellin-2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q94C59 | PATL4 | Patellin-4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M0R2 | PATL5 | Patellin-5 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q5SPP0 | clvs2 | Clavesin-2 | Danio rerio (Zebrafish) (Brachydanio rerio) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAQEEVQKSA | DVAAAPVVKE | KPITDKEVTI | PTPVAEKEEV | AAPVSDEKAV | PEKEVTPEKE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| APAAEAEKSV | SVKEEETVVV | AEKVVVLTAE | EVQKKALEEF | KELVREALNK | REFTAPVTPV |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KEEKTEEKKT | EEETKEEEKT | EEKKEETTTE | VKVEEEKPAV | PAAEEEKSSE | AAPVETKSEE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| KPEEKAEVTT | EKASSAEEDG | TKTVEAIEES | IVSVSPPESA | VAPVVVETVA | VAEAEPVEPE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EVSIWGVPLL | QDERSDVILT | KFLRARDFKV | KEALTMLKNT | VQWRKENKID | ELVESGEEVS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| EFEKMVFAHG | VDKEGHVVIY | SSYGEFQNKE | LFSDKEKLNK | FLSWRIQLQE | KCVRAIDFSN |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PEAKSSFVFV | SDFRNAPGLG | KRALWQFIRR | AVKQFEDNYP | EFAAKELFIN | VPWWYIPYYK |
| 430 | 440 | 450 | 460 | 470 | 480 |
| TFGSIITSPR | TRSKMVLAGP | SKSADTIFKY | IAPEQVPVKY | GGLSKDTPLT | EETITEAIVK |
| 490 | 500 | 510 | 520 | 530 | 540 |
| PAANYTIELP | ASEACTLSWE | LRVLGADVSY | GAQFEPTTEG | SYAVIVSKTR | KIGSTDEPVI |
| 550 | 560 | 570 | |||
| TDSFKVGEPG | KIVITIDNQT | SKKKKVLYRF | KTQ |