Q93050
Gene name |
ATP6V0A1 (ATP6N1, ATP6N1A, VPP1) |
Protein name |
V-type proton ATPase 116 kDa subunit a 1 |
Names |
V-ATPase 116 kDa subunit a 1, Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit, Vacuolar adenosine triphosphatase subunit Ac116, Vacuolar proton pump subunit 1, Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:535 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
444 variants for Q93050
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1204448380 RCV000984719 CA399592911 |
447 | R>Q | Esophageal atresia [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
| VAR_087489 | 477 | S>P | DEE104; unknown pathological significance [UniProt] | Yes | UniProt |
|
VAR_087490 CA290762663 rs781278654 |
495 | R>W | Variant assessed as Somatic; impact. NEDEBA; unknown pathological significance [NCI-TCGA, UniProt] | Yes |
ClinGen UniProt NCI-TCGA TOPMed dbSNP gnomAD |
| VAR_087491 | 505 | A>P | NEDEBA; impaired acidification of endolysosomal compartments; when tested in transgenic mice, homozygosity leads to body weights lower than in wild-type animals, impaired motor function, defects in the neuronal development and synapse formation and eventually death at about 2 weeks of age [UniProt] | Yes | UniProt |
|
VAR_087492 rs766856192 CA8576379 |
527 | N>D | NEDEBA; unknown pathological significance; impaired acidification of endolysosomal compartments [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
| VAR_087493 | 551 | G>E | DEE104; unknown pathological significance [UniProt] | Yes | UniProt |
|
RCV001267573 VAR_087494 CA399584957 RCV002226480 RCV002226479 RCV002271565 rs1567871600 RCV000678272 |
740 | R>Q | Autism Global developmental delay Developmental and epileptic encephalopathy 104 Variant assessed as Somatic; impact. Inborn genetic diseases DEE104; impaired acidification of endolysosomal compartments; when tested in transgenic mice, homozygosity leads to embryonic death at 5 to 6 dpc [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
VAR_087495 TCGA novel |
804 | R>H | Variant assessed as Somatic; impact. DEE104 [NCI-TCGA, UniProt] | Yes |
NCI-TCGA UniProt |
|
rs1321772023 CA399577159 |
2 | G>E | No |
ClinGen gnomAD |
|
|
rs1314299746 CA399577157 |
2 | G>W | No |
ClinGen gnomAD |
|
| TCGA novel | 3 | E>? | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs779205570 CA290758322 |
3 | E>D | No |
ClinGen Ensembl |
|
|
CA290758325 rs144263882 |
6 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8575976 rs144263882 |
6 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399577210 rs1243690493 |
6 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs796930148 CA290758326 |
7 | S>N | No |
ClinGen Ensembl |
|
| TCGA novel | 9 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8575977 rs762746790 |
12 | L>M | No |
ClinGen ExAC gnomAD |
|
|
CA399577457 rs1183499979 |
22 | A>V | No |
ClinGen gnomAD |
|
|
rs1403403681 CA399577510 |
25 | C>S | No |
ClinGen Ensembl |
|
|
CA8575982 rs753863830 |
27 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs907977079 CA290758333 |
32 | L>F | No |
ClinGen TOPMed |
|
|
rs755485576 CA399577701 |
35 | V>F | No |
ClinGen ExAC gnomAD |
|
|
CA8575983 rs755485576 |
35 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA399577738 rs1332418979 |
36 | Q>H | No |
ClinGen gnomAD |
|
|
COSM3819628 COSM3819629 rs1050799200 CA290758336 |
38 | R>C | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs779408907 CA8575984 |
38 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs372616123 | 39 | D>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs938187145 CA290759159 |
46 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs112804782 CA290759160 |
48 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs775674726 CA8576005 |
49 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399579028 rs1311497633 COSM472815 |
49 | R>W | kidney Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA8576008 rs756984374 |
58 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs371946847 CA8576010 |
62 | D>G | No |
ClinGen ESP ExAC TOPMed |
|
| TCGA novel | 63 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1193242986 CA399579300 |
66 | R>G | No |
ClinGen gnomAD |
|
|
CA399579431 rs1598705338 |
68 | V>I | No |
ClinGen Ensembl |
|
|
CA8576031 rs748686055 |
72 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 75 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1472429480 CA399579566 |
76 | N>D | No |
ClinGen TOPMed |
|
|
CA8576032 rs768640506 |
77 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs545345712 CA8576033 |
78 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs771902927 CA8576035 |
80 | M>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 86 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399579769 rs1166231450 |
89 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA8576037 rs759834496 |
90 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775654279 CA8576039 |
92 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA399579808 rs1163486300 |
92 | R>W | No |
ClinGen gnomAD |
|
|
rs1459701672 CA399579821 |
93 | D>Y | No |
ClinGen gnomAD |
|
|
rs148759339 CA8576040 |
94 | M>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1333164607 CA399579840 |
94 | M>T | No |
ClinGen gnomAD |
|
|
CA399579915 rs1326764651 |
98 | E>G | No |
ClinGen gnomAD |
|
|
CA8576041 rs370052932 |
98 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
| TCGA novel | 101 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576063 rs753555360 |
105 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA8576064 rs761008462 |
107 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs142398225 CA290759540 |
111 | I>V | No |
ClinGen ESP gnomAD |
|
|
CA399580371 rs1567812300 |
112 | N>H | No |
ClinGen Ensembl |
|
|
CA290759541 rs771265499 |
112 | N>S | No |
ClinGen Ensembl |
|
|
CA8576068 rs778425613 |
113 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA399580383 rs1412922330 |
114 | N>H | No |
ClinGen TOPMed |
|
|
rs377283389 CA8576069 |
117 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8576070 rs758346328 |
126 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs746962618 CA8576072 COSM979495 |
127 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs901191354 CA290759542 |
130 | F>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA399580500 rs1200101137 |
131 | I>L | No |
ClinGen TOPMed |
|
| TCGA novel | 133 | R>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399580515 rs1453817469 |
133 | R>C | No |
ClinGen TOPMed |
|
|
CA399580516 rs1269274593 |
133 | R>H | No |
ClinGen gnomAD |
|
|
rs527951831 CA8576073 |
134 | K>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs781021955 CA8576074 |
138 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs781021955 CA399580549 |
138 | F>V | No |
ClinGen ExAC gnomAD |
|
|
CA399580566 rs1215142524 |
139 | F>L | No |
ClinGen gnomAD |
|
| TCGA novel | 140 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757190852 CA8576092 |
142 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA8576094 rs140591345 |
143 | A>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140591345 CA8576093 |
143 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1335034996 CA399581828 |
146 | D>Y | No |
ClinGen gnomAD |
|
|
rs1319729044 CA399581927 |
151 | S>T | No |
ClinGen gnomAD |
|
|
CA290760315 rs891216376 |
159 | E>K | No |
ClinGen TOPMed |
|
|
CA8576098 rs548951835 |
160 | M>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA290760316 rs889651311 |
160 | M>L | No |
ClinGen Ensembl |
|
|
CA399582123 rs1480359299 |
161 | G>R | No |
ClinGen gnomAD |
|
|
rs1345072246 CA399582172 |
164 | T>A | No |
ClinGen TOPMed |
|
|
rs1259668281 CA399582209 |
166 | L>S | No |
ClinGen gnomAD |
|
|
rs1598797857 CA399583466 |
171 | V>M | No |
ClinGen Ensembl |
|
|
CA8576121 rs746361772 |
174 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs953351023 CA290760390 |
175 | I>V | No |
ClinGen Ensembl |
|
|
CA399583566 rs770195864 |
176 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1303982939 CA399583577 |
177 | R>P | No |
ClinGen gnomAD |
|
|
CA399583575 rs1303982939 |
177 | R>Q | No |
ClinGen gnomAD |
|
|
CA8576123 rs775804667 |
177 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399583590 rs1598798168 |
178 | E>G | No |
ClinGen Ensembl |
|
|
CA399583583 rs1447615804 |
178 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA399583587 rs1447615804 |
178 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA399583604 rs1598798210 |
179 | R>G | No |
ClinGen Ensembl |
|
|
COSM979501 CA8576124 rs565034112 |
179 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA399583617 rs565034112 |
179 | R>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8576126 rs773733920 |
185 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs752851816 CA290760391 |
189 | R>W | No |
ClinGen TOPMed |
|
|
rs1598798413 CA399583827 |
190 | V>G | No |
ClinGen Ensembl |
|
|
rs766919770 CA8576128 |
192 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1598798559 CA399583902 |
194 | N>K | No |
ClinGen Ensembl |
|
|
CA8576129 rs750432237 |
197 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA290760392 rs750432237 |
197 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
rs141985511 CA8576133 |
203 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs777985254 CA8576134 |
204 | N>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1343218626 CA399584041 |
205 | P>A | No |
ClinGen gnomAD |
|
|
rs1206082544 CA399584172 |
211 | T>N | No |
ClinGen TOPMed |
|
|
rs1275651223 CA399585709 |
213 | D>N | No |
ClinGen gnomAD |
|
|
CA290760604 rs999446258 |
213 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8576150 rs772806504 |
214 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA8576148 rs145824527 |
214 | Y>H | No |
ClinGen ESP ExAC TOPMed |
|
|
CA8576149 rs772806504 |
214 | Y>S | No |
ClinGen ExAC gnomAD |
|
|
CA399585758 rs1598814845 |
215 | V>M | No |
ClinGen Ensembl |
|
| TCGA novel | 216 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1188209429 CA399585882 |
219 | V>A | No |
ClinGen gnomAD |
|
|
CA399585907 rs1351334473 |
220 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
CA290760605 rs753688999 |
221 | I>L | No |
ClinGen Ensembl |
|
|
CA290760606 rs748693129 |
221 | I>T | No |
ClinGen Ensembl |
|
| TCGA novel | 222 | I>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576154 rs764929128 |
227 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1409265708 CA399586141 |
227 | D>V | No |
ClinGen gnomAD |
|
| TCGA novel | 228 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1328327614 CA399586220 |
230 | K>R | No |
ClinGen gnomAD |
|
|
rs1294062263 CA399586331 |
233 | V>I | No |
ClinGen gnomAD |
|
|
CA399586363 rs1475772702 |
234 | K>E | No |
ClinGen TOPMed |
|
|
rs1478561540 CA399587951 |
240 | F>L | No |
ClinGen Ensembl |
|
|
rs1278948627 CA399587934 |
240 | F>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1482098212 CA399587963 |
241 | R>Q | No |
ClinGen gnomAD |
|
|
rs756257957 CA8576178 |
252 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs888422651 CA399588114 |
252 | Q>L | No |
ClinGen gnomAD |
|
|
rs888422651 CA290760860 |
252 | Q>R | No |
ClinGen gnomAD |
|
|
CA399588130 rs1357030232 |
253 | E>G | No |
ClinGen TOPMed |
|
|
rs1290866448 CA399588138 |
254 | R>G | No |
ClinGen TOPMed |
|
|
CA399588174 rs1240831114 |
256 | E>* | No |
ClinGen TOPMed |
|
|
rs766418874 CA8576179 |
256 | E>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 257 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576180 rs754421311 |
258 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399588242 rs1394538353 |
261 | V>M | No |
ClinGen gnomAD |
|
|
CA8576182 rs779368097 |
265 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs143549371 CA8576184 |
266 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs748395848 CA8576183 |
266 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA8576185 rs777626938 |
268 | L>F | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 274 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1226165648 COSM243128 CA399588572 |
275 | T>M | Variant assessed as Somatic; 0.0 impact. prostate [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA399588617 rs1598873404 |
278 | H>P | No |
ClinGen Ensembl |
|
|
CA8576205 COSM187064 rs780783054 |
279 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA399588664 rs745305946 |
281 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290761297 rs111886720 |
282 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
| TCGA novel | 284 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1567834856 CA399588724 |
285 | A>V | No |
ClinGen Ensembl |
|
|
CA8576209 rs749195764 |
290 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1254060184 CA399588809 |
290 | I>V | No |
ClinGen TOPMed |
|
|
CA8576210 rs566274919 |
291 | R>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 292 | V>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs774086002 CA8576211 |
293 | W>C | No |
ClinGen ExAC gnomAD |
|
|
CA8576213 rs770993827 |
298 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760921231 CA8576212 |
298 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1567834987 CA399589010 |
300 | M>V | No |
ClinGen Ensembl |
|
|
rs776786992 CA399589050 |
302 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs776786992 CA8576214 |
302 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA8576215 rs759592546 |
304 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399589425 rs1463951018 |
321 | A>T | No |
ClinGen gnomAD |
|
|
rs1567835131 CA399589574 |
328 | T>I | No |
ClinGen Ensembl |
|
|
rs763530702 CA8576218 |
329 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576219 rs763530702 |
329 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751930898 CA399589584 |
330 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576220 rs751930898 |
330 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756972023 CA8576221 |
339 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA8576233 rs372582548 |
344 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs775661172 CA8576234 |
345 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs148041636 CA290761717 |
348 | V>L | No |
ClinGen ESP gnomAD |
|
|
rs1226222067 CA399590223 |
349 | P>A | No |
ClinGen gnomAD |
|
|
CA290761719 rs865840370 |
354 | R>K | No |
ClinGen Ensembl |
|
|
CA399590301 rs1209663907 |
360 | T>P | No |
ClinGen gnomAD |
|
|
rs751982251 CA8576237 |
361 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA8576236 rs200910081 |
361 | P>S | No |
ClinGen 1000Genomes ExAC |
|
|
CA8576239 rs375619478 |
364 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399590326 rs375619478 |
364 | Y>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1395143398 CA399590363 |
369 | K>T | No |
ClinGen gnomAD |
|
|
rs1173431469 CA399590369 |
370 | F>L | No |
ClinGen gnomAD |
|
|
rs544168841 CA8576242 |
371 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs753281371 CA8576243 |
372 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 375 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399590414 rs1362992943 |
376 | N>I | No |
ClinGen gnomAD |
|
|
rs1442982210 CA399590419 |
377 | I>V | No |
ClinGen gnomAD |
|
|
CA8576244 rs754923573 |
385 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1276696693 CA399590487 |
387 | R>Q | No |
ClinGen gnomAD |
|
|
rs1476032591 CA399592075 |
393 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1310769971 CA399592151 |
396 | I>T | No |
ClinGen TOPMed |
|
|
CA8576269 rs754550279 |
396 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399592173 rs1403508370 |
397 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA8576270 rs764696555 |
398 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA290762440 rs369271937 |
401 | F>L | No |
ClinGen Ensembl |
|
|
CA399592300 rs1484583299 |
406 | M>I | No |
ClinGen gnomAD |
|
|
rs1567844853 CA399592312 |
407 | F>S | No |
ClinGen Ensembl |
|
|
rs1189944326 CA399592360 |
411 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1285120643 CA399592373 |
412 | H>N | No |
ClinGen gnomAD |
|
| TCGA novel | 412 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 413 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1472838489 CA399592387 |
413 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 415 | L>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1208563158 CA399592439 |
416 | M>I | No |
ClinGen gnomAD |
|
|
CA8576275 rs200532770 |
418 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1204020106 CA399592474 |
420 | A>P | No |
ClinGen gnomAD |
|
|
rs1204020106 CA399592476 |
420 | A>S | No |
ClinGen gnomAD |
|
|
CA399592482 rs1181497040 |
420 | A>V | No |
ClinGen gnomAD |
|
|
rs1405765288 CA399592491 |
421 | V>A | No |
ClinGen gnomAD |
|
|
rs1415761751 CA399592488 |
421 | V>L | No |
ClinGen gnomAD |
|
|
rs1415761751 CA399592484 |
421 | V>M | No |
ClinGen gnomAD |
|
|
CA399592510 rs1455361981 |
422 | W>C | No |
ClinGen gnomAD |
|
|
rs1343659011 CA399592504 |
422 | W>L | No |
ClinGen gnomAD |
|
|
rs1030007724 CA290762445 |
423 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA399592515 rs1321370310 |
423 | M>L | No |
ClinGen gnomAD |
|
|
CA399592551 rs1188443948 |
426 | R>T | No |
ClinGen gnomAD |
|
| TCGA novel | 429 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs146036659 CA8576277 |
429 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs955212628 CA290762447 |
429 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs1317586374 CA399592609 |
432 | S>T | No |
ClinGen gnomAD |
|
|
rs940991057 CA290762453 |
435 | N>I | No |
ClinGen Ensembl |
|
|
rs1430466592 CA399592661 |
435 | N>K | No |
ClinGen gnomAD |
|
|
rs750180732 CA8576313 |
439 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA290762570 rs765857213 |
439 | M>V | No |
ClinGen gnomAD |
|
|
CA8576314 rs755267539 |
440 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs937634474 CA290762574 |
442 | T>I | No |
ClinGen Ensembl |
|
|
rs867971055 CA290762575 |
447 | R>* | No |
ClinGen Ensembl |
|
|
rs1056191855 CA290762578 |
452 | L>S | No |
ClinGen Ensembl |
|
|
rs752859402 CA8576316 |
458 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576317 rs758546996 |
460 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs1210541436 CA399593248 |
467 | C>F | No |
ClinGen gnomAD |
|
|
rs1292356413 CA399593299 |
470 | K>R | No |
ClinGen TOPMed |
|
|
rs753796165 CA8576319 |
471 | S>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 471 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399593327 rs1184527849 |
472 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA399593349 rs1176425712 |
473 | N>T | No |
ClinGen gnomAD |
|
|
CA8576320 rs771385911 |
474 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399593373 rs1410202083 |
474 | I>V | No |
ClinGen TOPMed |
|
|
CA399593382 rs1223838925 |
475 | F>V | No |
ClinGen Ensembl |
|
|
CA399593440 rs1472458746 |
478 | S>A | No |
ClinGen gnomAD |
|
|
CA399593491 rs1157645236 |
480 | S>C | No |
ClinGen gnomAD |
|
|
CA399593515 rs1352155398 |
481 | V>I | No |
ClinGen gnomAD |
|
|
rs746171513 CA8576322 |
482 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs201792350 CA8576321 |
482 | R>W | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs770040745 CA8576323 |
483 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399593625 rs1473734195 |
484 | M>I | No |
ClinGen gnomAD |
|
|
CA8576325 rs762479953 |
484 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA8576326 rs367628656 |
485 | F>L | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1294855964 CA399593763 |
490 | T>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs774015063 CA8576345 |
491 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA290762660 rs757323755 |
493 | T>A | No |
ClinGen Ensembl |
|
|
CA8576346 rs138172466 |
493 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs771707983 CA8576347 |
495 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576348 rs773324387 |
496 | G>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 497 | N>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs766219895 CA399594012 |
497 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs760669174 CA8576349 |
497 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs147306624 CA8576351 |
499 | V>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1359581780 CA399594082 |
499 | V>I | No |
ClinGen gnomAD |
|
|
rs1359581780 CA399594087 |
499 | V>L | No |
ClinGen gnomAD |
|
|
rs1005848561 CA290762675 |
503 | N>S | No |
ClinGen Ensembl |
|
|
rs764165065 CA8576353 |
506 | L>F | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 507 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576355 rs757393538 |
507 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA8576354 rs201011997 |
507 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1280969658 CA399594415 |
513 | P>L | No |
ClinGen gnomAD |
|
|
rs767551542 CA8576356 |
515 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399594541 rs1254581382 |
518 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA399594573 rs1466647236 |
519 | D>E | No |
ClinGen gnomAD |
|
|
rs1009568244 CA290761660 |
521 | I>L | No |
ClinGen gnomAD |
|
|
rs767604668 CA8576376 |
522 | W>* | No |
ClinGen ExAC gnomAD |
|
|
rs761261290 CA8576378 |
524 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA8576377 rs750460108 |
524 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8576380 COSM1679827 rs754370235 |
530 | T>M | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
| TCGA novel | 533 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs868257133 CA290761674 |
533 | N>S | No |
ClinGen Ensembl |
|
| TCGA novel | 540 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs752421243 CA8576383 |
541 | V>L | No |
ClinGen ExAC TOPMed |
|
|
CA8576384 rs758085544 |
545 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA399574751 rs1194463764 |
546 | I>T | No |
ClinGen TOPMed |
|
|
CA399574760 rs1288067447 |
547 | H>N | No |
ClinGen gnomAD |
|
| TCGA novel | 547 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1230465964 CA399574813 |
550 | F>L | No |
ClinGen gnomAD |
|
|
CA8576387 rs139770191 |
550 | F>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8576388 rs781058283 |
553 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399574866 rs1253490261 |
554 | L>M | No |
ClinGen gnomAD |
|
| TCGA novel | 554 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576389 rs745786517 |
555 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399574889 rs1181216395 |
555 | S>N | No |
ClinGen gnomAD |
|
|
rs763897972 CA8576390 |
555 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399574904 rs1168733887 |
556 | L>V | No |
ClinGen gnomAD |
|
|
rs1222072943 CA399574910 |
557 | F>L | No |
ClinGen TOPMed |
|
|
CA399574947 rs1345430229 |
559 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA8576391 rs775211788 |
559 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs745810882 CA8576408 |
560 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs149805487 CA8576393 |
560 | I>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs975275755 CA290761691 |
560 | I>V | No |
ClinGen Ensembl |
|
|
rs769677289 CA8576409 |
563 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA399577073 rs1365283881 |
568 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
rs779826357 CA8576410 |
568 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8576411 rs749142430 |
569 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1249234743 CA399577104 |
571 | G>R | No |
ClinGen gnomAD |
|
|
CA399577112 rs1346904346 |
571 | G>V | No |
ClinGen gnomAD |
|
|
rs992361615 CA290762140 |
572 | F>L | No |
ClinGen TOPMed |
|
|
CA290762137 rs558687761 |
572 | F>Y | No |
ClinGen Ensembl |
|
|
CA399577129 rs1180072191 |
573 | I>L | No |
ClinGen TOPMed |
|
|
CA8576412 rs768437493 |
574 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs1482791268 CA399577306 |
580 | T>I | No |
ClinGen TOPMed |
|
|
rs770938788 CA399577432 |
585 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA8576415 rs770938788 |
585 | Y>S | No |
ClinGen ExAC gnomAD |
|
|
CA399577476 rs1190432004 |
587 | V>I | No |
ClinGen gnomAD |
|
|
rs144777006 CA8576416 |
592 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399577662 rs1188213965 |
594 | W>S | No |
ClinGen gnomAD |
|
|
CA8576418 rs112081952 |
595 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA290762154 rs1045182771 |
595 | T>S | No |
ClinGen TOPMed |
|
|
rs776125400 CA8576419 |
596 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576420 rs367635343 |
597 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767349131 CA8576422 |
600 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764487894 CA8576421 |
600 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756881568 CA8576423 |
603 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA399578075 rs1433667183 |
610 | I>T | No |
ClinGen gnomAD |
|
|
rs145633304 CA8576426 |
612 | F>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399578118 rs1347824556 |
612 | F>L | No |
ClinGen TOPMed |
|
|
COSM1245760 rs780036781 CA8576427 |
615 | M>I | oesophagus [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA399578169 rs1201080114 |
615 | M>V | No |
ClinGen gnomAD |
|
|
COSM1521516 rs1274101552 CA399578261 |
619 | S>F | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA399578320 rs754820314 |
623 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs754820314 CA8576429 |
623 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA399578326 rs1210573659 |
624 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA8576432 rs77268875 |
627 | M>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs147746945 CA8576431 |
627 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs755663014 CA8576445 |
634 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs753798724 CA8576447 |
638 | F>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 638 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576448 rs117202885 |
641 | V>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA399578499 rs1445656888 |
642 | V>F | No |
ClinGen TOPMed |
|
|
CA399578498 rs1445656888 |
642 | V>L | No |
ClinGen TOPMed |
|
|
CA290762252 rs760024401 |
643 | A>V | No |
ClinGen Ensembl |
|
|
CA8576451 rs758116548 |
650 | M>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 652 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399578572 rs1403286881 |
653 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
CA399578566 rs1411213626 |
653 | F>L | No |
ClinGen gnomAD |
|
|
rs781542880 CA8576452 |
655 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1389658963 CA399578588 |
656 | L>W | No |
ClinGen gnomAD |
|
|
CA399578606 rs1314742760 |
659 | R>C | No |
ClinGen gnomAD |
|
|
rs376300031 CA8576455 |
659 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs376300031 CA8576454 |
659 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA290762269 COSM1521515 rs575815633 |
660 | R>C | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA8576457 rs144192654 |
660 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs774589412 CA8576458 |
661 | Q>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 662 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs151155566 CA8576459 |
663 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1394153589 CA399578635 |
664 | R>W | No |
ClinGen TOPMed |
|
|
CA399578665 rs1480499797 |
668 | L>V | No |
ClinGen gnomAD |
|
|
rs1567863412 CA399580817 |
670 | T>A | No |
ClinGen Ensembl |
|
|
CA399580831 rs1404056208 |
672 | N>S | No |
ClinGen gnomAD |
|
|
CA399580849 rs1361545649 |
675 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA399580882 rs1303955337 |
680 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
CA8576490 rs185595561 |
681 | G>R | Variant assessed as Somatic; 4.622e-05 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA8576491 rs752727287 |
682 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399580896 rs1465728339 |
682 | P>S | No |
ClinGen gnomAD |
|
|
rs1268922237 CA399581045 |
692 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs112247526 CA8576494 |
697 | T>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA399581121 rs1192563642 |
697 | T>I | No |
ClinGen gnomAD |
|
|
rs1325316506 CA399581132 |
698 | H>R | No |
ClinGen TOPMed |
|
|
CA399581154 rs1479971775 |
700 | E>K | No |
ClinGen gnomAD |
|
|
rs150332921 CA399581185 |
701 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8576496 rs780479259 |
702 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1319070308 CA399581248 |
704 | E>K | No |
ClinGen gnomAD |
|
|
rs1319070308 CA399581249 |
704 | E>Q | No |
ClinGen gnomAD |
|
|
rs745565784 CA8576525 |
707 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA399581538 rs1567864673 |
708 | D>N | No |
ClinGen Ensembl |
|
|
rs897790143 CA290763519 |
708 | D>V | No |
ClinGen TOPMed |
|
|
rs376546870 CA8576527 |
709 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1302845 CA399581579 rs1344107646 |
710 | V>M | Variant assessed as Somatic; impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1220963843 CA399584281 |
711 | F>S | No |
ClinGen TOPMed |
|
|
rs1339106824 CA399584340 |
712 | D>E | No |
ClinGen TOPMed |
|
|
CA8576553 rs770730405 |
713 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399584432 rs1262397455 |
714 | G>E | No |
ClinGen gnomAD |
|
|
CA399584495 rs1201869248 |
717 | M>I | No |
ClinGen gnomAD |
|
|
CA290764040 rs926935948 |
717 | M>T | No |
ClinGen Ensembl |
|
|
CA8576555 rs763111032 |
717 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8576556 rs764188376 |
718 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1599138547 CA399584520 |
719 | H>P | No |
ClinGen Ensembl |
|
|
rs1483219729 CA399584572 |
721 | A>T | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 722 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 722 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399584644 rs1190096127 |
724 | T>S | No |
ClinGen gnomAD |
|
|
rs1567871469 CA399584647 |
725 | I>V | No |
ClinGen Ensembl |
|
|
rs767962651 CA8576559 |
726 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs756472204 CA8576561 |
727 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs866092970 CA399584798 |
731 | C>S | No |
ClinGen gnomAD |
|
|
CA290764042 rs866092970 |
731 | C>Y | No |
ClinGen gnomAD |
|
|
rs780441715 CA8576562 |
732 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 734 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576563 rs753579697 |
736 | A>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 743 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs989470348 CA290764044 |
745 | S>G | No |
ClinGen Ensembl |
|
|
rs1332649860 CA399585192 |
749 | A>G | No |
ClinGen gnomAD |
|
|
rs1332649860 CA399585186 |
749 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8576605 rs758031329 |
750 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
CA399585514 rs1182404409 |
755 | L>V | No |
ClinGen gnomAD |
|
|
CA399585549 rs1263346088 |
757 | T>N | No |
ClinGen gnomAD |
|
|
rs1386158952 COSM1679829 CA399585560 |
758 | M>T | kidney [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs1299160920 CA399585555 |
758 | M>V | No |
ClinGen TOPMed |
|
|
rs1383029666 CA399585628 |
762 | I>V | No |
ClinGen gnomAD |
|
|
CA8576608 rs199785715 |
763 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8576609 rs781172509 |
765 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA8576610 rs567300859 |
766 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8576611 rs755951354 |
767 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1467939195 CA399585790 |
768 | S>N | No |
ClinGen TOPMed |
|
|
rs115331328 CA8576612 |
770 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs138753905 CA8576615 |
772 | G>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8576616 rs141898946 |
774 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA290764070 rs144220352 |
777 | F>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8576617 rs144220352 |
777 | F>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1567872546 CA399586021 |
778 | F>S | No |
ClinGen Ensembl |
|
|
CA399586148 rs1462121818 |
782 | F>V | No |
ClinGen gnomAD |
|
|
CA399586181 rs1200797114 |
783 | A>G | No |
ClinGen TOPMed |
|
|
CA399586211 rs1202501707 |
785 | L>V | No |
ClinGen gnomAD |
|
|
CA399586283 rs1486679169 |
787 | V>M | No |
ClinGen gnomAD |
|
|
CA399586515 rs1351836920 |
792 | I>F | No |
ClinGen TOPMed gnomAD |
|
|
rs368531818 CA8576622 |
792 | I>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1351836920 CA399586488 |
792 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA399586588 rs1178273736 |
794 | E>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1429933097 CA399586670 |
797 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
TCGA novel CA399586780 rs1599145248 |
802 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Ensembl |
|
CA399589683 rs1329227916 |
807 | W>* | No |
ClinGen gnomAD |
|
|
CA8576664 rs140036720 |
812 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399589806 rs1216150001 |
816 | S>N | No |
ClinGen gnomAD |
|
|
CA399589829 rs1223628476 |
819 | G>S | No |
ClinGen gnomAD |
|
|
CA399589862 rs1431883295 |
822 | F>L | No |
ClinGen gnomAD |
|
|
rs976674451 CA290764815 |
823 | L>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 823 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8576668 rs760220142 |
824 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA399589884 rs1422493950 |
825 | F>S | No |
ClinGen TOPMed |
|
|
CA8576670 rs776657619 |
829 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs765087589 CA8576672 |
831 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758251014 CA8576674 |
831 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765087589 CA8576673 |
831 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 834 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1309322342 CA399590078 |
835 | F>C | No |
ClinGen gnomAD |
|
|
CA8576675 rs767914703 |
836 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA8576676 rs773278685 |
838 | E>S | No |
ClinGen ExAC gnomAD |
No associated diseases with Q93050
Functions
21 GO annotations of cellular component
| Name | Definition |
|---|---|
| anchoring junction | A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix. |
| clathrin-coated vesicle membrane | The lipid bilayer surrounding a clathrin-coated vesicle. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| endosome membrane | The lipid bilayer surrounding an endosome. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| ficolin-1-rich granule membrane | The lipid bilayer surrounding a ficolin-1-rich granule. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| lysosomal membrane | The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. |
| melanosome | A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nuclear speck | A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy. |
| perinuclear region of cytoplasm | Cytoplasm situated near, or occurring around, the nucleus. |
| phagocytic vesicle membrane | The lipid bilayer surrounding a phagocytic vesicle. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| proton-transporting V-type ATPase complex | A proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across a concentration gradient. The resulting transmembrane electrochemical potential of H+ is used to drive a variety of (i) secondary active transport systems via H+-dependent symporters and antiporters and (ii) channel-mediated transport systems. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis. V-type ATPases are found in the membranes of organelles such as vacuoles, endosomes, and lysosomes, and in the plasma membrane. |
| secretory granule membrane | The lipid bilayer surrounding a secretory granule. |
| synaptic vesicle membrane | The lipid bilayer surrounding a synaptic vesicle. |
| vacuolar proton-transporting V-type ATPase complex | A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen. |
| vacuolar proton-transporting V-type ATPase, V0 domain | The V0 domain of a proton-transporting V-type ATPase found in the vacuolar membrane. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATPase binding | Binding to an ATPase, any enzyme that catalyzes the hydrolysis of ATP. |
| proton-transporting ATPase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism. |
6 GO annotations of biological process
| Name | Definition |
|---|---|
| endosomal lumen acidification | Any process that reduces the pH of the endosomal lumen, measured by the concentration of the hydrogen ion. |
| lysosomal lumen acidification | Any process that reduces the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion. |
| proton transmembrane transport | The directed movement of a proton across a membrane. |
| regulation of macroautophagy | Any process that modulates the frequency, rate or extent of macroautophagy. |
| toxin transport | The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| vacuolar acidification | Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion. |
16 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P32563 | VPH1 | V-type proton ATPase subunit a, vacuolar isoform | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| O97681 | ATP6V0A2 | V-type proton ATPase 116 kDa subunit a 2 | Bos taurus (Bovine) | PR |
| Q29466 | ATP6V0A1 | V-type proton ATPase 116 kDa subunit a 1 | Bos taurus (Bovine) | PR |
| Q9I8D0 | ATP6V0A1 | V-type proton ATPase 116 kDa subunit a 1 | Gallus gallus (Chicken) | PR |
| Q9HBG4 | ATP6V0A4 | V-type proton ATPase 116 kDa subunit a 4 | Homo sapiens (Human) | PR |
| Q13488 | TCIRG1 | V-type proton ATPase 116 kDa subunit a 3 | Homo sapiens (Human) | PR |
| Q9Y487 | ATP6V0A2 | V-type proton ATPase 116 kDa subunit a 2 | Homo sapiens (Human) | PR |
| P15920 | Atp6v0a2 | V-type proton ATPase 116 kDa subunit a 2 | Mus musculus (Mouse) | PR |
| Q920R6 | Atp6v0a4 | V-type proton ATPase 116 kDa subunit a 4 | Mus musculus (Mouse) | PR |
| Q9Z1G4 | Atp6v0a1 | V-type proton ATPase 116 kDa subunit a 1 | Mus musculus (Mouse) | PR |
| P25286 | Atp6v0a1 | V-type proton ATPase 116 kDa subunit a 1 | Rattus norvegicus (Rat) | PR |
| P30628 | unc-32 | V-type proton ATPase 116 kDa subunit a 1 | Caenorhabditis elegans | PR |
| Q8RWZ7 | VHA-a1 | V-type proton ATPase subunit a1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SJT7 | VHA-a2 | V-type proton ATPase subunit a2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q8W4S4 | VHA-a3 | V-type proton ATPase subunit a3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| A1A5G6 | atp6v0a1 | V-type proton ATPase 116 kDa subunit a 1 | Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGELFRSEEM | TLAQLFLQSE | AAYCCVSELG | ELGKVQFRDL | NPDVNVFQRK | FVNEVRRCEE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| MDRKLRFVEK | EIRKANIPIM | DTGENPEVPF | PRDMIDLEAN | FEKIENELKE | INTNQEALKR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| NFLELTELKF | ILRKTQQFFD | EMADPDLLEE | SSSLLEPSEM | GRGTPLRLGF | VAGVINRERI |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PTFERMLWRV | CRGNVFLRQA | EIENPLEDPV | TGDYVHKSVF | IIFFQGDQLK | NRVKKICEGF |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RASLYPCPET | PQERKEMASG | VNTRIDDLQM | VLNQTEDHRQ | RVLQAAAKNI | RVWFIKVRKM |
| 310 | 320 | 330 | 340 | 350 | 360 |
| KAIYHTLNLC | NIDVTQKCLI | AEVWCPVTDL | DSIQFALRRG | TEHSGSTVPS | ILNRMQTNQT |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PPTYNKTNKF | TYGFQNIVDA | YGIGTYREIN | PAPYTIITFP | FLFAVMFGDF | GHGILMTLFA |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VWMVLRESRI | LSQKNENEMF | STVFSGRYII | LLMGVFSMYT | GLIYNDCFSK | SLNIFGSSWS |
| 490 | 500 | 510 | 520 | 530 | 540 |
| VRPMFTYNWT | EETLRGNPVL | QLNPALPGVF | GGPYPFGIDP | IWNIATNKLT | FLNSFKMKMS |
| 550 | 560 | 570 | 580 | 590 | 600 |
| VILGIIHMLF | GVSLSLFNHI | YFKKPLNIYF | GFIPEIIFMT | SLFGYLVILI | FYKWTAYDAH |
| 610 | 620 | 630 | 640 | 650 | 660 |
| TSENAPSLLI | HFINMFLFSY | PESGYSMLYS | GQKGIQCFLV | VVALLCVPWM | LLFKPLVLRR |
| 670 | 680 | 690 | 700 | 710 | 720 |
| QYLRRKHLGT | LNFGGIRVGN | GPTEEDAEII | QHDQLSTHSE | DADEPSEDEV | FDFGDTMVHQ |
| 730 | 740 | 750 | 760 | 770 | 780 |
| AIHTIEYCLG | CISNTASYLR | LWALSLAHAQ | LSEVLWTMVI | HIGLSVKSLA | GGLVLFFFFT |
| 790 | 800 | 810 | 820 | 830 | |
| AFATLTVAIL | LIMEGLSAFL | HALRLHWVEF | QNKFYSGTGF | KFLPFSFEHI | REGKFEE |