Q08174
Gene name |
PCDH1 |
Protein name |
Protocadherin-1 |
Names |
Cadherin-like protein 1, Protocadherin-42, PC42 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5097 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
5 structures for Q08174
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 6BX7 | X-ray | 285 A | A | 58-503 | PDB |
| 6MGA | X-ray | 315 A | A | 58-503 | PDB |
| 6PIM | X-ray | 305 A | A | 271-503 | PDB |
| 6VFP | X-ray | 320 A | A | 58-498 | PDB |
| AF-Q08174-F1 | Predicted | AlphaFoldDB |
712 variants for Q08174
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA128462672 rs949510255 |
3 | S>C | No |
ClinGen TOPMed |
|
|
rs949510255 CA361560594 |
3 | S>G | No |
ClinGen TOPMed |
|
|
rs918064256 CA128462671 |
3 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1186391091 CA361560582 |
3 | S>R | No |
ClinGen gnomAD |
|
|
CA128462669 rs866633155 |
4 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA361560547 rs935525135 |
5 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs935525135 CA128462660 |
5 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1426102538 CA361560545 |
6 | G>S | No |
ClinGen gnomAD |
|
|
rs925525770 CA128462650 |
8 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
rs925525770 CA361560476 |
8 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1198472659 CA361560497 |
8 | R>W | No |
ClinGen TOPMed |
|
|
CA361560467 rs1476981956 |
9 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1265340755 CA361560458 |
9 | R>L | No |
ClinGen gnomAD |
|
|
rs1265340755 CA361560460 |
9 | R>P | No |
ClinGen gnomAD |
|
|
CA361560474 rs1476981956 |
9 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA361560409 rs1217451982 |
11 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs12517385 CA3483302 VAR_047530 RCV000960031 |
15 | L>F | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA361556464 rs1414429414 |
16 | L>P | No |
ClinGen TOPMed |
|
|
CA128456067 rs1051354980 |
22 | R>K | No |
ClinGen gnomAD |
|
|
rs764095502 CA3483300 |
23 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs1269103852 CA361556335 |
24 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs760704687 CA3483299 |
24 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483297 VAR_047531 rs12515587 |
25 | H>P | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
COSM1063570 rs776015302 CA3483298 |
25 | H>Y | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA128456046 rs890538436 |
26 | L>V | No |
ClinGen TOPMed |
|
|
rs1238524885 CA361556291 |
27 | R>K | No |
ClinGen gnomAD |
|
|
rs774571014 CA3483295 |
27 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA361556250 rs1310438429 |
29 | S>N | No |
ClinGen gnomAD |
|
|
CA361556211 rs1233068335 |
31 | G>D | No |
ClinGen gnomAD |
|
|
rs1329535000 CA361556190 |
32 | P>H | No |
ClinGen gnomAD |
|
|
CA361556197 rs1339786561 |
32 | P>S | No |
ClinGen TOPMed |
|
|
rs1325830630 CA361556177 |
33 | G>E | No |
ClinGen gnomAD |
|
|
rs771256072 CA361556158 |
34 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs771256072 CA3483294 |
34 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs538908747 CA3483291 |
36 | R>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs538908747 COSM267110 CA3483290 |
36 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA3483292 rs772869932 |
36 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361556096 rs768705093 |
38 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs1285627249 CA361556008 COSM3947082 COSM3947081 |
42 | M>I | lung [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1489555713 CA361556022 |
42 | M>K | No |
ClinGen gnomAD |
|
|
CA3483284 rs199652228 |
42 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA361556026 rs199652228 |
42 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs778024037 CA3483283 |
45 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1234146638 CA361555913 |
49 | L>P | No |
ClinGen gnomAD |
|
|
rs967649120 CA128455979 |
50 | L>P | No |
ClinGen Ensembl |
|
|
rs768075458 CA3483280 |
51 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1333375963 CA361555867 |
52 | P>S | No |
ClinGen gnomAD |
|
|
CA3483277 rs766673155 |
54 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs368405112 CA3483278 |
54 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs374330580 CA3483275 |
57 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361555758 rs1171340681 |
58 | T>I | No |
ClinGen TOPMed |
|
|
CA361555741 rs1477892049 |
59 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA361555745 rs1477892049 |
59 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA3483274 rs769551793 |
59 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs761471094 CA361555720 |
61 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483273 rs761471094 |
61 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483272 rs148187969 |
63 | K>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA361555674 rs1358907117 |
64 | V>M | No |
ClinGen TOPMed |
|
|
CA3483270 rs201187483 |
65 | P>L | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
CA3483271 rs768214938 |
65 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1283682034 CA361555579 |
70 | P>H | No |
ClinGen gnomAD |
|
|
CA361555581 rs1341170189 |
70 | P>S | No |
ClinGen gnomAD |
|
|
rs1452477326 CA361555569 |
71 | N>D | No |
ClinGen gnomAD |
|
|
CA3483266 rs778027039 |
74 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA128455900 rs139286727 |
76 | S>R | No |
ClinGen ESP |
|
|
CA3483263 COSM1063569 rs781258463 |
78 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA361555402 rs1172307716 |
79 | A>T | No |
ClinGen gnomAD |
|
|
CA3483260 rs766880384 |
80 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs752035623 CA3483261 |
80 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA3483258 rs750790709 |
81 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA3483259 rs750790709 |
81 | Y>N | No |
ClinGen ExAC gnomAD |
|
|
CA128455835 rs267600463 |
82 | G>D | No |
ClinGen Ensembl |
|
| TCGA novel | 89 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1289225888 CA361554929 |
94 | V>M | No |
ClinGen gnomAD |
|
|
CA3483251 rs772030845 |
97 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483249 rs774136762 |
99 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs770651861 CA3483248 |
100 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs748389102 CA3483247 |
100 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483245 rs755054912 |
101 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA128455761 rs865856848 |
102 | D>N | No |
ClinGen Ensembl |
|
|
CA3483244 rs747093176 |
102 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs1164720248 CA361554609 |
107 | D>N | No |
ClinGen gnomAD |
|
|
CA3483241 rs377111127 |
108 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs147663164 CA3483240 |
111 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3483237 rs763814674 |
112 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA3483236 rs760160399 |
115 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs1219442685 CA361554370 |
115 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA3483235 rs775060779 |
116 | D>N | No |
ClinGen ExAC TOPMed |
|
|
CA361554310 rs1288264074 |
117 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs372303891 CA3483234 |
117 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1753000062 RCV001172297 |
118 | E>G | No |
ClinVar dbSNP |
|
|
rs1351434822 CA361554246 CA361554257 |
119 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA361554205 rs1311161507 |
120 | L>F | No |
ClinGen gnomAD |
|
|
CA361554208 rs1311161507 |
120 | L>V | No |
ClinGen gnomAD |
|
|
rs1366429431 CA361554180 |
121 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
COSM1496014 rs145360303 CA3483232 |
121 | R>H | kidney Variant assessed as Somatic; 4.62e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3483233 rs145360303 |
121 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3483230 rs749049237 |
123 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA3483227 rs747128533 |
124 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776890162 CA3483229 |
124 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA3483228 rs768912565 |
124 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
CA361553978 rs148895524 |
126 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361554028 rs1235954983 |
126 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA361553934 rs1318028619 |
127 | L>H | No |
ClinGen gnomAD |
|
|
CA361553883 rs1208469667 |
129 | G>V | No |
ClinGen TOPMed |
|
|
CA361553855 rs1275471871 |
130 | D>E | No |
ClinGen TOPMed |
|
|
rs1030802549 CA128455659 |
133 | I>F | No |
ClinGen TOPMed gnomAD |
|
|
CA361553774 rs1030802549 |
133 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
rs779523893 CA3483223 |
135 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA361553480 rs1311344483 |
142 | D>E | No |
ClinGen gnomAD |
|
|
CA3483221 rs754240502 |
144 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs897927557 CA128455625 |
144 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA361553299 rs1277017324 |
147 | G>V | No |
ClinGen gnomAD |
|
|
CA3483220 rs763718911 |
148 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 150 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3483217 rs767072400 |
150 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752233787 CA3483218 |
150 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1392672028 CA361553081 |
156 | I>T | No |
ClinGen TOPMed |
|
|
CA361553088 rs1394231881 |
156 | I>V | No |
ClinGen TOPMed |
|
|
CA361553044 rs1596559691 |
158 | V>G | No |
ClinGen Ensembl |
|
|
CA361553016 rs1416366852 |
159 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 160 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs766283966 CA3483214 |
161 | I>F | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 162 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361552811 rs1265455382 |
166 | P>H | No |
ClinGen gnomAD |
|
|
CA128455570 rs894727536 |
166 | P>S | No |
ClinGen TOPMed |
|
|
rs1482893996 CA361552775 |
167 | N>T | No |
ClinGen gnomAD |
|
|
CA3483210 rs760965789 |
169 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA3483209 rs201001001 |
170 | S>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361552647 rs1256778707 |
171 | P>L | No |
ClinGen TOPMed |
|
|
CA3483207 rs745913835 |
173 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361552566 rs1295684439 |
175 | L>V | No |
ClinGen gnomAD |
|
|
CA361552546 rs1383208095 |
176 | A>T | No |
ClinGen gnomAD |
|
|
rs779619811 CA3483206 |
177 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA3483203 COSM136504 rs778212309 |
184 | G>S | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA361552129 rs1418842775 |
188 | P>S | No |
ClinGen TOPMed |
|
|
rs752422297 CA3483201 |
190 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA128455519 rs938315730 |
190 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1461566411 CA361552006 |
193 | S>L | No |
ClinGen gnomAD |
|
|
CA3483200 rs149707808 |
195 | R>C | No |
ClinGen ESP ExAC gnomAD |
|
|
rs754529774 CA3483199 |
195 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483197 rs565031164 |
198 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA3483196 rs762885803 |
199 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs566915735 COSM72084 CA128455477 |
201 | G>S | ovary Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs761475844 CA3483193 |
203 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA128455464 rs939034002 |
206 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1398992285 CA361551390 |
208 | Q>R | No |
ClinGen gnomAD |
|
|
rs772164876 CA3483191 |
209 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs1276665724 CA361551341 |
209 | A>V | No |
ClinGen TOPMed |
|
|
CA361551319 rs1457514528 |
210 | G>R | No |
ClinGen gnomAD |
|
| TCGA novel | 211 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1343040250 CA361551250 |
212 | E>K | No |
ClinGen TOPMed |
|
|
CA361551254 rs1343040250 |
212 | E>Q | No |
ClinGen TOPMed |
|
|
CA361551172 rs1165354449 |
214 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 215 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA128455440 rs927679290 |
215 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA3483189 rs774575563 |
218 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1250842305 CA361550869 |
224 | D>N | No |
ClinGen gnomAD |
|
|
CA361550822 rs1345920090 |
225 | Q>E | No |
ClinGen gnomAD |
|
|
CA361550771 rs1488066254 |
226 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA128455397 rs970595996 |
227 | E>G | No |
ClinGen Ensembl |
|
|
rs749835318 CA3483187 |
229 | Q>K | No |
ClinGen ExAC |
|
|
rs770231746 CA3483185 |
231 | Q>H | No |
ClinGen ExAC |
|
|
CA361550548 rs1225616088 |
232 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs762101067 CA361550511 |
233 | I>F | No |
ClinGen gnomAD |
|
|
CA361550505 rs1360809107 |
233 | I>T | No |
ClinGen gnomAD |
|
|
rs762101067 CA128455343 |
233 | I>V | No |
ClinGen gnomAD |
|
|
CA361550436 rs1343008247 |
235 | M>T | No |
ClinGen gnomAD |
|
|
CA361550363 rs989994247 |
237 | N>I | No |
ClinGen TOPMed |
|
|
CA128455336 rs989994247 |
237 | N>T | No |
ClinGen TOPMed |
|
|
rs748436639 CA3483184 |
238 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483183 rs775181487 |
240 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483182 rs199716237 |
240 | R>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1174950089 CA361550281 |
241 | E>D | No |
ClinGen TOPMed |
|
|
rs1374352025 CA361550259 |
242 | R>C | No |
ClinGen gnomAD |
|
|
CA3483181 rs144034716 |
242 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361550235 rs1388590176 |
243 | W>R | No |
ClinGen gnomAD |
|
|
rs962934701 CA128455307 |
246 | Y>C | No |
ClinGen gnomAD |
|
| TCGA novel | 246 | Y>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757855778 CA3483179 |
250 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs765058335 CA3483177 |
252 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757127230 CA3483176 |
253 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA3483172 rs774661465 |
259 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs762909406 CA3483170 |
260 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762909406 CA3483169 |
260 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773816282 CA3483168 |
260 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA361549444 rs1232738741 |
261 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA3483166 rs748615391 |
263 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1285262238 CA361549370 |
264 | A>T | No |
ClinGen gnomAD |
|
|
rs776866031 CA3483165 |
266 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746686590 CA3483163 |
267 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA361549299 rs746686590 |
267 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs139217153 CA3483164 |
267 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1402405327 CA361549281 |
268 | V>I | No |
ClinGen gnomAD |
|
| TCGA novel | 270 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757947766 CA3483161 |
271 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361549183 rs1395184298 |
273 | T>A | No |
ClinGen TOPMed |
|
|
rs962143646 CA128455219 |
273 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA361549058 rs1477182496 |
277 | A>G | No |
ClinGen gnomAD |
|
|
CA3483159 rs201502657 |
277 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 279 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs747135149 CA3483157 |
282 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
COSM449015 rs201168116 CA3483158 |
282 | R>W | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1449250053 CA361548828 |
284 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs751869800 CA3483154 |
288 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs377292989 CA3483155 COSM1219421 |
288 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3483153 rs766686322 |
292 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA128455172 rs148156227 |
296 | G>S | No |
ClinGen ESP TOPMed |
|
|
rs1317328857 CA361548349 |
297 | H>Y | No |
ClinGen gnomAD |
|
|
rs763149474 CA3483152 |
298 | S>L | No |
ClinGen ExAC gnomAD |
|
|
rs765296106 CA3483150 |
299 | V>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 301 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs200438003 CA3483103 |
302 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs767800428 CA3483101 |
312 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA3483100 rs759910038 |
314 | E>A | No |
ClinGen ExAC gnomAD |
|
|
rs916675413 CA128497376 |
316 | E>A | No |
ClinGen TOPMed gnomAD |
|
|
CA3483098 rs770603781 |
316 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs748120372 CA3483094 |
320 | H>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483091 rs746802325 |
321 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483092 rs531215232 |
321 | Q>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA361538891 rs1224999034 |
322 | A>T | No |
ClinGen gnomAD |
|
|
rs374705686 CA3483090 |
322 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA128497354 rs542198883 |
324 | E>D | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
COSM1310794 rs749448423 CA3483088 |
324 | E>K | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs777850372 CA3483087 |
325 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483085 rs753240380 |
327 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1310793 CA128497341 rs149443924 |
328 | R>H | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA TOPMed gnomAD |
|
rs768041893 CA3483084 |
329 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483083 rs755355364 |
331 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs201976134 CA3483082 |
333 | D>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 333 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361538667 rs1404410049 |
334 | R>M | No |
ClinGen TOPMed |
|
|
rs1321161297 CA361538661 |
334 | R>S | No |
ClinGen TOPMed |
|
|
rs1186865999 CA361538645 |
335 | N>S | No |
ClinGen gnomAD |
|
|
CA3483081 rs766585212 |
336 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772953751 CA3483079 |
339 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361538546 rs1308012696 |
341 | V>A | No |
ClinGen TOPMed |
|
|
rs764871569 CA3483078 |
343 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs761376607 CA3483077 |
343 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs776485009 CA3483076 |
344 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361538474 rs1382412522 |
345 | V>E | No |
ClinGen gnomAD |
|
|
rs1215705853 CA361538489 |
345 | V>M | No |
ClinGen gnomAD |
|
|
CA361538467 rs1454772219 |
346 | D>N | No |
ClinGen gnomAD |
|
|
CA3483073 rs775363715 |
347 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA361538441 rs1297652207 |
347 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA3483072 rs146837198 |
349 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3483070 rs777936720 |
354 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756231603 CA3483069 |
356 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1007607799 CA128497303 |
357 | V>M | No |
ClinGen TOPMed |
|
|
rs1185262590 CA361538227 |
359 | A>T | No |
ClinGen gnomAD |
|
|
CA3483068 rs748245558 |
362 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA3483067 rs200086291 |
362 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3483066 rs755512304 |
363 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483065 rs751951852 |
364 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483064 rs766790322 |
365 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA3483063 rs758798134 |
365 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA3483062 rs545864832 |
366 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 367 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs142395032 CA3483060 |
368 | S>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3483061 rs142395032 |
368 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs138410646 CA3483059 |
369 | A>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3483058 rs763448022 |
370 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775247517 CA3483056 |
373 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA3483055 rs771892465 |
376 | T>I | No |
ClinGen ExAC |
|
|
rs200925077 CA3483054 |
377 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1363678924 CA361537854 |
378 | K>N | No |
ClinGen gnomAD |
|
|
rs773477285 CA3483053 |
380 | M>K | No |
ClinGen ExAC gnomAD |
|
|
CA128497257 rs1020639043 |
380 | M>V | No |
ClinGen Ensembl |
|
|
rs1179147053 CA361537722 |
384 | A>D | No |
ClinGen gnomAD |
|
|
CA128497246 rs868856320 |
386 | T>I | No |
ClinGen Ensembl |
|
|
rs1420520480 CA361537609 |
390 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1339988813 CA361537325 |
401 | M>K | No |
ClinGen TOPMed |
|
|
CA3483048 rs768567800 |
404 | I>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 407 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs780677775 CA3483046 |
407 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA361537111 rs1360479113 |
409 | A>S | No |
ClinGen TOPMed |
|
|
CA128497226 rs543378456 |
411 | E>K | No |
ClinGen 1000Genomes |
|
|
rs1307753997 CA361537001 |
412 | T>R | No |
ClinGen gnomAD |
|
|
rs1561483546 CA361536944 |
414 | V>L | No |
ClinGen Ensembl |
|
| TCGA novel | 422 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3483044 rs750808211 |
422 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs778778968 CA3483043 |
425 | G>V | No |
ClinGen ExAC |
|
|
CA361536561 rs1383902196 |
427 | N>D | No |
ClinGen gnomAD |
|
|
CA3483041 rs753376722 |
427 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1055500662 CA128497207 |
436 | G>D | No |
ClinGen Ensembl |
|
|
CA361536364 rs1175061290 |
436 | G>S | No |
ClinGen gnomAD |
|
|
rs1270453151 CA361536278 |
438 | V>M | No |
ClinGen gnomAD |
|
|
rs752725093 CA3483038 |
440 | F>Y | No |
ClinGen ExAC gnomAD |
|
|
CA128497199 rs374295073 |
441 | Q>L | No |
ClinGen ESP |
|
|
rs1441383396 CA361536148 |
443 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA3483037 rs767425135 |
443 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361536131 rs1441383396 |
443 | R>S | No |
ClinGen TOPMed |
|
|
rs759392558 CA3483036 |
444 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA361536098 rs1353081948 |
444 | Q>P | No |
ClinGen gnomAD |
|
|
CA361536059 rs1261480104 |
446 | S>R | No |
ClinGen gnomAD |
|
|
CA3483035 rs774136837 |
447 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1223161926 CA361536032 |
447 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
| TCGA novel | 449 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361535973 rs1285292298 |
449 | G>S | No |
ClinGen gnomAD |
|
| TCGA novel | 453 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs751752911 | 455 | K>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1554071750 CA361535634 |
461 | T>A | No |
ClinGen Ensembl |
|
|
CA3483032 rs762116965 |
462 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA3483031 rs202081544 |
463 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA128497183 rs202081544 |
463 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1402149004 CA361535514 |
467 | E>G | No |
ClinGen TOPMed |
|
|
CA361535520 rs1355495742 |
467 | E>K | No |
ClinGen gnomAD |
|
|
CA3483027 rs772706127 |
471 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3483028 rs780765653 |
471 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746315371 CA3483026 |
473 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs948079727 CA128497163 |
474 | I>T | No |
ClinGen TOPMed |
|
|
CA361535256 rs1309513245 |
477 | V>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1191688586 CA361535239 |
478 | A>V | No |
ClinGen gnomAD |
|
|
rs200446806 CA3483024 |
479 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1449056306 CA361535230 |
479 | V>M | No |
ClinGen gnomAD |
|
|
CA3483023 rs201207549 |
480 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA128497158 rs919496148 |
484 | P>T | No |
ClinGen Ensembl |
|
|
CA361535040 rs752195982 |
485 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA3483020 rs752195982 |
485 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA361535016 rs1229563159 |
487 | S>F | No |
ClinGen gnomAD |
|
|
rs759482639 CA3483018 |
489 | T>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 491 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1314183592 CA361534854 |
493 | K>T | No |
ClinGen gnomAD |
|
|
rs762626597 CA3483015 |
499 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 500 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3483013 rs188129691 |
503 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3483011 rs775720563 |
509 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA3483010 rs772223335 |
511 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA3483009 rs746403208 |
512 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA3483007 rs376948396 |
513 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3483006 rs749598726 |
513 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA3483004 rs3822357 VAR_047532 |
514 | A>T | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs141151266 CA3483002 |
516 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361534196 rs1407010842 |
518 | N>D | No |
ClinGen TOPMed |
|
|
rs1456746969 CA361534113 |
519 | N>K | No |
ClinGen TOPMed |
|
|
CA3482999 rs372512626 |
521 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361534064 rs372512626 |
521 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs758272223 CA3482998 |
522 | G>C | No |
ClinGen ExAC gnomAD |
|
|
rs370013653 CA3482997 |
522 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361534025 rs1382947569 |
523 | E>Q | No |
ClinGen TOPMed |
|
|
CA3482996 rs765020059 |
524 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482995 rs760996352 |
526 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361533925 rs1596554040 |
527 | E>D | No |
ClinGen Ensembl |
|
|
CA361533922 rs1412129736 |
528 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1285087270 CA361533861 |
530 | A>T | No |
ClinGen TOPMed |
|
|
rs1485831613 CA361533850 |
531 | S>R | No |
ClinGen gnomAD |
|
|
rs775808473 CA3482994 |
535 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1019096782 CA128497083 |
536 | G>D | No |
ClinGen TOPMed |
|
|
CA128497064 rs950488966 |
539 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA3482991 rs775053672 |
546 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749733959 CA3482989 |
547 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA3482990 rs771333291 |
547 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA3482988 rs199843770 |
548 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1268035534 CA361533415 |
548 | E>K | No |
ClinGen gnomAD |
|
|
rs770146209 CA3482987 |
549 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482984 rs571086743 |
550 | A>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA128497041 rs748147367 |
550 | A>T | No |
ClinGen Ensembl |
|
|
CA3482982 rs780108305 |
551 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1596553886 CA361533153 |
552 | K>Q | No |
ClinGen Ensembl |
|
|
CA361533131 rs1344350723 |
553 | G>S | No |
ClinGen gnomAD |
|
|
rs551152667 CA361533053 |
557 | I>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA361532993 rs1340387467 |
560 | E>D | No |
ClinGen Ensembl |
|
|
rs564250121 CA3482978 |
560 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1596553845 CA361532948 |
563 | E>G | No |
ClinGen Ensembl |
|
|
CA3482975 rs759753996 |
567 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA3482976 rs767834901 |
567 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1160536619 CA361532818 |
569 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1160536619 CA361532821 |
569 | S>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA361532754 rs1214861592 |
572 | R>Q | No |
ClinGen gnomAD |
|
|
CA361532760 COSM3927465 COSM3927464 rs1247058638 |
572 | R>W | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA3482971 rs773728323 |
575 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
COSM1063564 rs374252625 CA3482972 |
575 | R>W | endometrium [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA3482970 rs369563536 |
576 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361532660 rs762144264 |
578 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA3482969 rs762144264 |
578 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
rs146216055 CA128496967 |
578 | Y>H | No |
ClinGen ESP TOPMed |
|
|
rs768295979 CA3482967 |
579 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 580 | L>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3482966 rs746598806 |
581 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA361532555 rs1457974526 |
584 | A>T | No |
ClinGen gnomAD |
|
|
CA128496949 rs939424475 |
585 | A>T | No |
ClinGen TOPMed |
|
|
CA361532520 rs1596553635 |
586 | D>A | No |
ClinGen Ensembl |
|
|
CA128496943 rs781180397 |
586 | D>E | No |
ClinGen TOPMed |
|
|
CA3482962 rs778882581 |
587 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482963 rs369187210 |
587 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA361532446 rs1481361209 |
590 | P>L | No |
ClinGen gnomAD |
|
|
rs1596553582 CA361532391 |
593 | Q>H | No |
ClinGen Ensembl |
|
|
CA361532397 rs1561482597 |
593 | Q>R | No |
ClinGen Ensembl |
|
|
CA361532378 rs1596553574 |
594 | G>A | No |
ClinGen Ensembl |
|
|
CA361532387 rs1165247240 |
594 | G>C | No |
ClinGen TOPMed |
|
|
CA361532368 rs1365903551 |
595 | T>I | No |
ClinGen TOPMed |
|
|
CA3482961 rs201115293 |
595 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs1474282875 CA361532344 |
597 | T>A | No |
ClinGen gnomAD |
|
|
CA361532340 rs777641492 |
597 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs777641492 CA3482959 |
597 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs568746284 CA3482958 |
598 | V>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs751754625 CA3482957 |
600 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV000956317 CA3482956 rs149703720 |
601 | N>K | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA361532147 rs1312287067 |
609 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA3482955 rs763057781 |
613 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA361532059 rs1360236382 |
614 | L>M | No |
ClinGen gnomAD |
|
|
rs1436079322 CA361532039 |
615 | S>N | No |
ClinGen gnomAD |
|
|
CA3482953 rs765720757 |
617 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs762232227 CA3482952 |
618 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1359853732 CA361531964 |
619 | F>L | No |
ClinGen gnomAD |
|
|
CA361531953 rs1169579393 |
620 | S>* | No |
ClinGen gnomAD |
|
|
rs776986291 CA3482951 |
622 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361531937 rs1313670126 |
622 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs946908585 CA128496886 |
625 | M>V | No |
ClinGen TOPMed |
|
|
CA361531841 rs1421371597 |
627 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA361531817 rs1189052176 |
629 | S>N | No |
ClinGen gnomAD |
|
|
rs768952816 CA3482950 |
631 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs986064955 CA128496870 |
633 | M>I | No |
ClinGen Ensembl |
|
|
CA361531747 rs1185084345 |
633 | M>T | No |
ClinGen gnomAD |
|
| TCGA novel | 640 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs528488308 CA3482949 |
643 | E>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1306334699 CA361531487 |
647 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs371172915 CA3482947 |
648 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368667075 CA3482946 |
648 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371172915 CA3482948 |
648 | Q>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 650 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361531388 rs1382529880 |
651 | V>A | No |
ClinGen gnomAD |
|
|
CA361529698 rs374516458 |
655 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA128496836 rs975050732 COSM1329012 |
655 | N>S | ovary [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA3482943 rs749177426 |
656 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1297740064 CA361529672 |
657 | D>E | No |
ClinGen gnomAD |
|
|
CA361529650 rs777731416 |
659 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777731416 CA3482942 |
659 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755930699 CA3482941 |
660 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1409120781 CA361529570 |
665 | G>D | No |
ClinGen TOPMed |
|
|
CA361529567 rs1596553238 |
666 | T>P | No |
ClinGen Ensembl |
|
|
rs765235910 CA3482936 |
675 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs762322217 CA3482935 |
678 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1462394561 CA361529375 |
678 | Q>P | No |
ClinGen TOPMed |
|
|
rs950435382 CA128496781 |
679 | S>R | No |
ClinGen TOPMed |
|
|
rs1454298665 CA361529331 |
680 | T>I | No |
ClinGen TOPMed |
|
|
rs1454298665 CA361529334 |
680 | T>S | No |
ClinGen TOPMed |
|
|
rs1359091179 CA361529340 |
680 | T>S | No |
ClinGen gnomAD |
|
|
rs1596553142 CA361529310 |
682 | T>P | No |
ClinGen Ensembl |
|
|
CA3482933 rs764476383 |
685 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs919006816 CA128496771 |
689 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1317035429 CA361529171 |
690 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1317035429 CA361529168 |
690 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA3482928 rs774008852 |
692 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361529110 rs1308486720 |
693 | P>L | No |
ClinGen gnomAD |
|
|
rs182658984 CA128496762 |
694 | P>S | No |
ClinGen 1000Genomes |
|
|
rs1404271979 CA361529061 |
696 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA3482927 rs770514302 |
697 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA3482924 rs769526137 |
699 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA3482925 rs773252160 |
699 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs960214021 CA128496738 |
700 | G>D | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 707 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM3765173 rs1184593221 CA361528900 COSM3765172 |
708 | E>K | Variant assessed as Somatic; impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA3482919 rs34636888 |
712 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs781575679 CA3482918 |
714 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs781575679 CA128496704 |
714 | Y>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754386102 CA361528777 |
715 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1428140223 CA361528765 |
715 | I>M | No |
ClinGen TOPMed |
|
|
CA3482917 rs754386102 |
715 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361528724 rs1291017286 |
719 | S>F | No |
ClinGen TOPMed |
|
|
CA361528699 rs1596552916 |
721 | T>P | No |
ClinGen Ensembl |
|
|
CA361528684 rs1363081010 |
722 | S>P | No |
ClinGen TOPMed |
|
|
rs764566345 CA3482916 |
727 | T>N | No |
ClinGen ExAC |
|
|
CA361528618 rs1596552892 |
727 | T>P | No |
ClinGen Ensembl |
|
|
CA3482915 rs756498798 |
728 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs753105427 CA3482914 COSM1063562 |
731 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA3482913 rs200161054 |
731 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1561481859 CA361528542 |
733 | G>R | No |
ClinGen Ensembl |
|
|
rs62381424 CA128496672 CA361528512 |
734 | E>D | No |
ClinGen gnomAD |
|
|
rs370805685 CA3482912 |
735 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 735 | T>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361528487 rs1175171734 |
736 | V>A | No |
ClinGen gnomAD |
|
|
CA3482911 rs774104916 |
739 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1201677468 CA361528449 |
740 | A>E | No |
ClinGen gnomAD |
|
|
rs1376484608 CA361528454 |
740 | A>T | No |
ClinGen gnomAD |
|
|
rs1201677468 CA361528445 |
740 | A>V | Variant assessed as Somatic; 4.637e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA3482909 rs762529547 |
742 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 743 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773340601 CA3482908 |
746 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1257878937 CA361528324 |
749 | N>S | No |
ClinGen gnomAD |
|
|
CA3482906 rs747968827 |
751 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361528258 rs1427142796 |
753 | I>M | No |
ClinGen TOPMed |
|
|
rs1457006328 CA361528229 |
755 | S>G | No |
ClinGen gnomAD |
|
|
CA361528206 rs1481354804 |
756 | I>F | No |
ClinGen TOPMed |
|
|
CA3482905 rs776501623 |
757 | A>E | No |
ClinGen ExAC gnomAD |
|
|
CA128496636 rs189765898 |
758 | G>V | No |
ClinGen 1000Genomes |
|
|
rs1233889792 CA361528134 |
759 | G>V | No |
ClinGen gnomAD |
|
|
rs1406539585 CA361528085 |
761 | P>L | No |
ClinGen TOPMed |
|
|
CA361528072 rs1436825094 |
762 | Y>C | No |
ClinGen gnomAD |
|
|
CA3482903 rs746122597 |
762 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482901 rs757381163 |
768 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482900 rs749360583 |
770 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749360583 CA361527882 |
770 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1372862367 CA361527683 |
779 | E>K | No |
ClinGen gnomAD |
|
|
CA3482897 rs753094322 |
782 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA3482898 rs756654044 |
782 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3482896 rs376177136 |
783 | R>C | No |
ClinGen ESP ExAC gnomAD |
|
|
CA3482895 rs755265366 |
783 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs751303598 CA3482894 |
785 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361527521 rs766116294 |
789 | R>C | No |
ClinGen ExAC gnomAD |
|
|
COSM1219422 COSM3670335 CA361527518 rs1225752178 |
789 | R>H | large_intestine central_nervous_system [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
CA3482893 rs766116294 |
789 | R>S | No |
ClinGen ExAC gnomAD |
|
|
rs1323549362 CA361527478 |
792 | V>L | No |
ClinGen gnomAD |
|
|
CA128496582 rs138352740 |
795 | S>N | No |
ClinGen ESP TOPMed |
|
|
CA3482889 rs143703336 COSM1219424 |
797 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs149389126 CA3482886 |
797 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs149389126 CA3482887 |
797 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs143703336 CA3482888 |
797 | R>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1313873398 CA361527369 |
798 | G>D | Variant assessed as Somatic; 4.631e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA3482882 rs777928072 |
800 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs538786315 CA3482883 |
800 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3482884 rs538786315 |
800 | P>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA128496543 rs751742122 |
802 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA361527304 rs751742122 |
802 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA3482880 rs370256285 |
802 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361527306 rs751742122 |
802 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs952644338 CA128496535 |
803 | Y>C | No |
ClinGen gnomAD |
|
|
CA361527235 rs1431971269 |
804 | G>V | No |
ClinGen gnomAD |
|
|
CA361527210 rs1423559568 |
805 | T>I | No |
ClinGen TOPMed |
|
|
rs781527569 CA3482879 |
807 | L>S | No |
ClinGen ExAC gnomAD |
|
|
rs1162060791 CA361527058 |
812 | V>I | No |
ClinGen TOPMed |
|
|
rs751967807 CA361527018 |
813 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751967807 CA3482876 |
813 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780499912 CA361526983 |
815 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780499912 CA3482875 |
815 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1328764414 CA361526988 |
815 | T>S | No |
ClinGen TOPMed |
|
|
rs758138536 CA3482874 |
818 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs576196969 CA3482873 |
819 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3482872 rs138699618 |
819 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3482871 rs138699618 |
819 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361526887 rs753866439 |
820 | T>K | No |
ClinGen ExAC gnomAD |
|
|
rs753866439 CA3482870 |
820 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA3482868 rs150197702 |
821 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482867 rs552405695 |
824 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA361526802 rs1596552294 |
824 | T>P | No |
ClinGen Ensembl |
|
|
CA361526735 COSM1063561 rs1161941993 |
827 | G>D | endometrium [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs555945646 CA3482865 |
832 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 833 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1561481132 CA361526503 |
837 | D>V | No |
ClinGen Ensembl |
|
|
rs769289817 CA3482860 |
839 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs747461979 CA3482859 |
845 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482858 rs780589611 |
846 | R>C | Variant assessed as Somatic; 4.631e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA361526333 rs780589611 |
846 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA3482857 rs758796441 |
846 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs267600462 CA128496428 |
847 | S>F | No |
ClinGen ESP TOPMed |
|
|
CA128496423 rs1009438365 |
849 | Q>H | No |
ClinGen Ensembl |
|
|
rs778410069 CA3482855 |
850 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756852838 CA3482854 COSM1063560 |
850 | R>H | endometrium Variant assessed as Somatic; 9.246e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA3482853 rs369689993 |
854 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 855 | F>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361526178 rs1395008357 |
857 | V>M | No |
ClinGen TOPMed |
|
|
rs1596552089 TCGA novel CA361526100 |
860 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Ensembl |
|
rs963117529 CA128496405 |
862 | V>M | No |
ClinGen TOPMed |
|
|
CA361526042 rs1326391005 |
864 | V>M | No |
ClinGen gnomAD |
|
|
rs759302651 CA3482848 |
865 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1289743965 CA361526023 |
865 | A>T | No |
ClinGen gnomAD |
|
|
CA361525974 rs1351690591 |
867 | L>F | No |
ClinGen gnomAD |
|
|
rs996382340 CA361525918 |
869 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA128496385 rs996382340 |
869 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs762027956 CA3482845 |
870 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361525889 rs1180341995 |
871 | A>P | No |
ClinGen gnomAD |
|
|
CA3482844 rs780317619 |
871 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs373060902 CA3482842 |
873 | L>P | No |
ClinGen ESP ExAC TOPMed |
|
| TCGA novel | 873 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361525831 rs1472862636 |
875 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA3482841 rs568532537 |
875 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA3482838 rs778696787 |
880 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs369457057 CA3482839 |
880 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1010971495 CA128496362 |
882 | A>S | No |
ClinGen TOPMed |
|
|
CA3482837 rs756868283 |
883 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs748917972 CA3482836 |
884 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs748917972 CA361525656 |
884 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1269446230 CA361525564 |
888 | A>V | No |
ClinGen gnomAD |
|
|
rs752678438 CA3482833 |
893 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA3482831 rs754868492 |
894 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1275878552 CA361525392 |
897 | Y>C | No |
ClinGen gnomAD |
|
|
rs751315356 CA3482830 |
898 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1363345137 CA361525374 |
898 | A>V | No |
ClinGen gnomAD |
|
|
CA3482829 rs766139826 |
899 | P>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 899 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs375137241 CA3482827 |
900 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482825 rs760818102 |
902 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA3482824 rs75190873 |
903 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 905 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361525200 rs1447260762 |
910 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA3482823 rs772705934 |
911 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs774597170 CA3482821 |
913 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3482822 rs552147376 |
913 | G>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs774597170 CA361525139 |
913 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1338723847 CA361525108 |
915 | K>N | No |
ClinGen TOPMed |
|
|
CA3482820 rs771282653 |
916 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs1208631681 CA361525101 |
916 | S>N | No |
ClinGen gnomAD |
|
|
rs1561480614 CA361525059 |
919 | P>L | No |
ClinGen Ensembl |
|
|
CA3482819 rs140336328 |
919 | P>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1279752987 CA361525021 |
921 | P>L | No |
ClinGen gnomAD |
|
|
CA3482815 rs755677036 |
922 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA3482816 rs1051999292 |
922 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1324453235 CA361524949 |
926 | E>A | No |
ClinGen TOPMed |
|
|
CA3482814 rs563810727 |
927 | D>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs3797055 CA3482812 |
928 | E>K | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
rs779746035 CA3482810 |
929 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs758182529 CA3482809 |
932 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA128496264 rs918901939 |
934 | Q>R | No |
ClinGen TOPMed |
|
|
CA361524798 rs1391792190 |
935 | K>E | No |
ClinGen gnomAD |
|
|
CA128496260 rs919883741 |
935 | K>R | No |
ClinGen Ensembl |
|
|
rs868433802 CA128496256 |
936 | S>F | No |
ClinGen Ensembl |
|
|
CA128496238 rs1037343672 |
940 | N>K | No |
ClinGen TOPMed |
|
|
CA3482807 rs754164814 |
940 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1483301919 CA361524657 |
942 | M>I | No |
ClinGen gnomAD |
|
|
rs142103365 CA3482805 |
943 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482803 rs767581083 |
944 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs529918090 CA3482802 |
945 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA128496221 rs529918090 |
945 | A>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs972785562 CA128496205 |
945 | A>V | No |
ClinGen Ensembl |
|
|
rs774887072 CA3482801 |
946 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs1204174688 CA361524528 |
948 | D>V | No |
ClinGen TOPMed |
|
|
rs772914406 CA3482798 |
948 | D>Y | No |
ClinGen ExAC |
|
|
CA3482796 rs747740639 |
951 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482797 rs747740639 |
951 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200375944 CA3482795 |
951 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1407938912 CA361524443 |
953 | H>P | No |
ClinGen gnomAD |
|
|
rs1307270813 CA361524446 |
953 | H>Y | No |
ClinGen gnomAD |
|
|
rs1457074654 CA361524399 |
955 | P>A | No |
ClinGen gnomAD |
|
|
CA3482794 rs768679246 |
955 | P>H | No |
ClinGen ExAC gnomAD |
|
|
CA361524343 rs922957862 |
958 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs922957862 CA128496164 |
958 | Y>S | No |
ClinGen TOPMed gnomAD |
|
|
CA3482793 rs375509872 |
960 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs375509872 CA361524316 |
960 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361524263 rs1254379676 |
962 | S>I | No |
ClinGen gnomAD |
|
|
CA361524243 rs1596551492 |
963 | P>A | No |
ClinGen Ensembl |
|
|
CA128496146 rs971684711 |
964 | D>A | No |
ClinGen Ensembl |
|
|
rs750102842 CA3482790 |
964 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA128496138 rs79125833 |
966 | G>A | No |
ClinGen Ensembl |
|
|
rs754376608 CA128496135 |
967 | R>C | No |
ClinGen gnomAD |
|
|
rs1224059852 CA361524168 |
967 | R>H | No |
ClinGen gnomAD |
|
|
rs1224059852 CA361524161 |
967 | R>L | No |
ClinGen gnomAD |
|
|
CA361524149 rs1178682465 |
968 | H>N | No |
ClinGen TOPMed |
|
|
CA361524084 rs1322349520 |
970 | R>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 970 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3482787 rs572369161 |
970 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
rs572369161 CA3482788 |
970 | R>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1157040543 CA361524020 |
973 | S>T | No |
ClinGen TOPMed |
|
|
rs1382560706 CA361524013 |
973 | S>Y | No |
ClinGen TOPMed |
|
|
rs1288930806 CA361524001 |
974 | P>L | No |
ClinGen gnomAD |
|
|
CA361523931 rs1321930638 |
977 | S>F | No |
ClinGen gnomAD |
|
|
CA361523909 rs1596551359 |
978 | I>T | No |
ClinGen Ensembl |
|
|
CA361523877 rs996328645 |
980 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
CA128496080 rs764060929 |
985 | P>S | No |
ClinGen Ensembl |
|
|
CA361523641 rs1302847569 |
989 | K>R | No |
ClinGen TOPMed |
|
|
CA361523546 rs1156367838 |
993 | V>M | No |
ClinGen gnomAD |
|
| TCGA novel | 996 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361523482 rs773411608 |
996 | D>N | No |
ClinGen ExAC |
|
|
CA3482781 rs773411608 |
996 | D>Y | No |
ClinGen ExAC |
|
|
rs1352332721 CA361523407 |
999 | P>R | No |
ClinGen TOPMed |
|
|
CA3482779 rs761565221 |
999 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs186780646 CA3482775 |
1003 | F>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs746978606 CA3482773 |
1004 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA361523275 rs1193126943 |
1006 | T>I | No |
ClinGen gnomAD |
|
|
CA3482770 rs556245446 |
1007 | G>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA361523222 rs1596551184 |
1009 | T>P | No |
ClinGen Ensembl |
|
|
rs745425766 CA3482769 |
1010 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3482767 COSM313911 rs200143790 |
1012 | T>M | lung [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs781632452 CA3482765 |
1013 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA361523114 rs1318154288 |
1015 | E>K | No |
ClinGen gnomAD |
|
|
CA3482762 rs766854307 |
1016 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
rs1376280886 CA361523039 |
1018 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs140974807 CA3482760 |
1019 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482759 rs765403385 |
1020 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA361522969 rs1466261512 |
1021 | S>N | No |
ClinGen gnomAD |
|
|
CA3482758 rs200867420 |
1022 | Y>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs147327566 CA3482757 |
1023 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767284701 CA128495999 |
1023 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA361522925 rs1233642853 |
1024 | T>A | No |
ClinGen gnomAD |
|
|
CA3482756 rs763953011 |
1025 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs1364720699 CA361522881 |
1026 | P>L | No |
ClinGen TOPMed |
|
|
CA3482753 rs368562035 |
1027 | P>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA128495983 rs368562035 |
1027 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482754 rs368562035 |
1027 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1365281038 CA361522873 |
1027 | P>S | No |
ClinGen gnomAD |
|
|
CA361522875 rs1365281038 |
1027 | P>T | No |
ClinGen gnomAD |
|
| rs776686446 | 1028 | K>Q | Variant assessed as Somatic; 9.834e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361522832 rs1164880944 |
1029 | Y>* | No |
ClinGen Ensembl |
|
|
CA128495974 rs931148838 |
1029 | Y>C | No |
ClinGen Ensembl |
|
|
CA361522834 rs931148838 |
1029 | Y>S | No |
ClinGen Ensembl |
|
|
rs1007717768 CA128495964 |
1030 | P>A | No |
ClinGen TOPMed |
|
|
rs745335942 CA3482751 |
1031 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA3482750 rs774024986 |
1031 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361522807 rs774024986 |
1031 | S>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA361522766 rs1435651864 |
1033 | Q>R | No |
ClinGen gnomAD |
|
|
CA361522754 rs1389958672 |
1034 | V>I | No |
ClinGen gnomAD |
|
|
rs1166932230 CA361522703 |
1036 | Q>R | No |
ClinGen gnomAD |
|
|
CA3482748 rs748956355 |
1039 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA3482746 rs375272019 |
1042 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142669127 CA3482745 |
1043 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs142669127 CA3482744 |
1043 | P>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1332240913 CA361522575 |
1044 | Q>H | No |
ClinGen gnomAD |
|
|
rs1480563423 CA361522559 |
1045 | P>L | No |
ClinGen TOPMed |
|
|
CA361522567 rs1266523700 |
1045 | P>S | No |
ClinGen TOPMed |
|
|
CA361522554 rs1596550872 |
1046 | L>Q | No |
ClinGen Ensembl |
|
|
rs1278103234 CA361522533 |
1047 | P>R | No |
ClinGen gnomAD |
|
|
rs758934739 CA3482743 |
1047 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs750452316 CA3482742 |
1048 | H>D | No |
ClinGen ExAC gnomAD |
|
|
CA3482741 rs201613360 |
1049 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA128495920 rs986452929 |
1050 | Y>C | No |
ClinGen Ensembl |
|
|
CA361522415 rs1241932869 |
1052 | G>A | No |
ClinGen gnomAD |
|
|
CA3482738 rs370784028 |
1052 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3482737 rs760492715 |
1053 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA128495907 rs774117618 |
1054 | I>T | No |
ClinGen Ensembl |
|
|
rs775184102 CA3482736 |
1055 | W>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1431835036 CA361522314 |
1057 | E>D | No |
ClinGen gnomAD |
|
|
rs759562831 CA3482734 |
1057 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1397416856 CA361522269 |
1059 | W>* | No |
ClinGen gnomAD |
No associated diseases with Q08174
12 regional properties for Q08174
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Cadherin-like | 56 - 168 | IPR002126-1 |
| domain | Cadherin-like | 169 - 280 | IPR002126-2 |
| domain | Cadherin-like | 281 - 387 | IPR002126-3 |
| domain | Cadherin-like | 396 - 506 | IPR002126-4 |
| domain | Cadherin-like | 506 - 715 | IPR002126-5 |
| domain | Cadherin-like | 731 - 844 | IPR002126-6 |
| domain | Cadherin, N-terminal | 60 - 140 | IPR013164 |
| domain | Protocadherin | 815 - 1028 | IPR013585 |
| conserved_site | Cadherin conserved site | 268 - 278 | IPR020894-1 |
| conserved_site | Cadherin conserved site | 494 - 504 | IPR020894-2 |
| conserved_site | Cadherin conserved site | 600 - 610 | IPR020894-3 |
| conserved_site | Cadherin conserved site | 703 - 713 | IPR020894-4 |
Functions
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| cell junction | A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella. |
| cell-cell junction | A cell junction that forms a connection between two or more cells of an organism; excludes direct cytoplasmic intercellular bridges, such as ring canals in insects. |
| integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| calcium ion binding | Binding to a calcium ion (Ca2+). |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| cell adhesion | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. |
| cell-cell signaling | Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions. |
| homophilic cell adhesion via plasma membrane adhesion molecules | The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell. |
| nervous system development | The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state. |
20 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9BZA8 | PCDH11Y | Protocadherin-11 Y-linked | Homo sapiens (Human) | PR |
| Q9HC56 | PCDH9 | Protocadherin-9 | Homo sapiens (Human) | PR |
| Q9P2E7 | PCDH10 | Protocadherin-10 | Homo sapiens (Human) | PR |
| Q9Y5H8 | PCDHA3 | Protocadherin alpha-3 | Homo sapiens (Human) | PR |
| Q9UN75 | PCDHA12 | Protocadherin alpha-12 | Homo sapiens (Human) | PR |
| Q9Y5I2 | PCDHA10 | Protocadherin alpha-10 | Homo sapiens (Human) | PR |
| Q9UN72 | PCDHA7 | Protocadherin alpha-7 | Homo sapiens (Human) | PR |
| Q9UN74 | PCDHA4 | Protocadherin alpha-4 | Homo sapiens (Human) | PR |
| Q9Y5I1 | PCDHA11 | Protocadherin alpha-11 | Homo sapiens (Human) | PR |
| Q9Y5H7 | PCDHA5 | Protocadherin alpha-5 | Homo sapiens (Human) | PR |
| Q9UN73 | PCDHA6 | Protocadherin alpha-6 | Homo sapiens (Human) | PR |
| Q9Y5H6 | PCDHA8 | Protocadherin alpha-8 | Homo sapiens (Human) | PR |
| Q9Y5I3 | PCDHA1 | Protocadherin alpha-1 | Homo sapiens (Human) | PR |
| Q9Y5H9 | PCDHA2 | Protocadherin alpha-2 | Homo sapiens (Human) | PR |
| Q9Y5H3 | PCDHGA10 | Protocadherin gamma-A10 | Homo sapiens (Human) | PR |
| O60330 | PCDHGA12 | Protocadherin gamma-A12 | Homo sapiens (Human) | PR |
| Q9Y5G4 | PCDHGA9 | Protocadherin gamma-A9 | Homo sapiens (Human) | PR |
| Q9Y5G0 | PCDHGB5 | Protocadherin gamma-B5 | Homo sapiens (Human) | PR |
| Q9Y5E3 | PCDHB6 | Protocadherin beta-6 | Homo sapiens (Human) | PR |
| Q9Y5F1 | PCDHB12 | Protocadherin beta-12 | Homo sapiens (Human) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDSGAGGRRC | PEAALLILGP | PRMEHLRHSP | GPGGQRLLLP | SMLLALLLLL | APSPGHATRV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| VYKVPEEQPP | NTLIGSLAAD | YGFPDVGHLY | KLEVGAPYLR | VDGKTGDIFT | TETSIDREGL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RECQNQLPGD | PCILEFEVSI | TDLVQNGSPR | LLEGQIEVQD | INDNTPNFAS | PVITLAIPEN |
| 190 | 200 | 210 | 220 | 230 | 240 |
| TNIGSLFPIP | LASDRDAGPN | GVASYELQAG | PEAQELFGLQ | VAEDQEEKQP | QLIVMGNLDR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| ERWDSYDLTI | KVQDGGSPPR | ASSALLRVTV | LDTNDNAPKF | ERPSYEAELS | ENSPIGHSVI |
| 310 | 320 | 330 | 340 | 350 | 360 |
| QVKANDSDQG | ANAEIEYTFH | QAPEVVRRLL | RLDRNTGLIT | VQGPVDREDL | STLRFSVLAK |
| 370 | 380 | 390 | 400 | 410 | 420 |
| DRGTNPKSAR | AQVVVTVKDM | NDNAPTIEIR | GIGLVTHQDG | MANISEDVAE | ETAVALVQVS |
| 430 | 440 | 450 | 460 | 470 | 480 |
| DRDEGENAAV | TCVVAGDVPF | QLRQASETGS | DSKKKYFLQT | TTPLDYEKVK | DYTIEIVAVD |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SGNPPLSSTN | SLKVQVVDVN | DNAPVFTQSV | TEVAFPENNK | PGEVIAEITA | SDADSGSNAE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| LVYSLEPEPA | AKGLFTISPE | TGEIQVKTSL | DREQRESYEL | KVVAADRGSP | SLQGTATVLV |
| 610 | 620 | 630 | 640 | 650 | 660 |
| NVLDCNDNDP | KFMLSGYNFS | VMENMPALSP | VGMVTVIDGD | KGENAQVQLS | VEQDNGDFVI |
| 670 | 680 | 690 | 700 | 710 | 720 |
| QNGTGTILSS | LSFDREQQST | YTFQLKAVDG | GVPPRSAYVG | VTINVLDEND | NAPYITAPSN |
| 730 | 740 | 750 | 760 | 770 | 780 |
| TSHKLLTPQT | RLGETVSQVA | AEDFDSGVNA | ELIYSIAGGN | PYGLFQIGSH | SGAITLEKEI |
| 790 | 800 | 810 | 820 | 830 | 840 |
| ERRHHGLHRL | VVKVSDRGKP | PRYGTALVHL | YVNETLANRT | LLETLLGHSL | DTPLDIDIAG |
| 850 | 860 | 870 | 880 | 890 | 900 |
| DPEYERSKQR | GNILFGVVAG | VVAVALLIAL | AVLVRYCRQR | EAKSGYQAGK | KETKDLYAPK |
| 910 | 920 | 930 | 940 | 950 | 960 |
| PSGKASKGNK | SKGKKSKSPK | PVKPVEDEDE | AGLQKSLKFN | LMSDAPGDSP | RIHLPLNYPP |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| GSPDLGRHYR | SNSPLPSIQL | QPQSPSASKK | HQVVQDLPPA | NTFVGTGDTT | STGSEQYSDY |
| 1030 | 1040 | 1050 | |||
| SYRTNPPKYP | SKQVGQPFQL | STPQPLPHPY | HGAIWTEVWE |