Q9NPA2
Gene name |
MMP25 (MMP20, MMPL1, MT6MMP) |
Protein name |
Matrix metalloproteinase-25 |
Names |
MMP-25, Leukolysin, Membrane-type matrix metalloproteinase 6, MT-MMP 6, MTMMP6, Membrane-type-6 matrix metalloproteinase, MT6-MMP, MT6MMP |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:64386 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9NPA2
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9NPA2-F1 | Predicted | AlphaFoldDB |
683 variants for Q9NPA2
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA276893400 rs961456599 |
2 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA394496157 rs976518420 |
4 | R>G | No |
ClinGen TOPMed |
|
|
rs1250353504 CA394496158 |
4 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA276893403 rs976518420 |
4 | R>W | No |
ClinGen TOPMed |
|
|
CA394496167 rs1213324691 |
5 | L>H | No |
ClinGen TOPMed |
|
|
CA394496175 rs1318818390 |
6 | R>Q | No |
ClinGen TOPMed |
|
|
rs755934127 CA7855892 |
7 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs917304116 CA276893441 |
8 | L>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA276893444 rs985384235 |
9 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1392711629 CA394496263 |
16 | A>T | No |
ClinGen TOPMed |
|
|
rs925891256 CA276893446 |
17 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1467354552 CA394496307 |
19 | A>G | No |
ClinGen gnomAD |
|
|
rs1457949195 CA394496300 |
19 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394496311 rs1174617588 |
20 | R>C | No |
ClinGen gnomAD |
|
|
CA394496314 rs1405788621 |
20 | R>H | No |
ClinGen gnomAD |
|
|
CA394496347 rs1171974660 |
22 | P>R | No |
ClinGen TOPMed |
|
|
rs12935256 CA276893452 |
23 | K>Q | No |
ClinGen Ensembl |
|
|
CA276893462 rs935661359 |
24 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1305037603 CA394496365 |
24 | P>T | No |
ClinGen gnomAD |
|
|
rs1053215937 CA276893468 |
26 | A>E | No |
ClinGen Ensembl |
|
|
rs912951660 CA276893475 |
27 | Q>R | No |
ClinGen Ensembl |
|
|
CA394496420 rs1250939695 |
28 | D>E | No |
ClinGen TOPMed |
|
| TCGA novel | 28 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1455493246 CA394496418 |
28 | D>V | No |
ClinGen TOPMed |
|
|
rs146142284 CA394496424 |
29 | V>L | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs146142284 CA276893478 |
29 | V>M | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA276893482 rs1041201180 |
31 | L>P | No |
ClinGen TOPMed |
|
|
rs1253284087 CA394496467 |
33 | V>M | No |
ClinGen TOPMed |
|
|
CA394496542 rs1193184303 |
34 | D>G | No |
ClinGen gnomAD |
|
|
rs1488946616 CA394496534 |
34 | D>N | No |
ClinGen gnomAD |
|
|
rs1488946616 CA394496538 |
34 | D>Y | No |
ClinGen gnomAD |
|
|
CA394496559 rs1330804976 |
35 | W>* | No |
ClinGen TOPMed |
|
|
rs909594718 CA276893737 |
35 | W>R | No |
ClinGen TOPMed |
|
|
rs201175024 CA7855910 |
37 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394496586 rs760682820 |
38 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7855911 rs760682820 |
38 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763977286 CA7855912 |
39 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs941609555 CA394496598 |
39 | Y>C | No |
ClinGen TOPMed |
|
|
rs941609555 CA276893757 |
39 | Y>S | No |
ClinGen TOPMed |
|
|
rs1596490170 CA394496623 |
41 | Y>S | No |
ClinGen Ensembl |
|
|
CA7855913 rs753743584 |
43 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs367986982 CA7855916 CA7855915 |
46 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 46 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394496697 rs1348837336 |
47 | P>A | No |
ClinGen gnomAD |
|
|
CA276893768 rs2142477 |
47 | P>R | No |
ClinGen Ensembl |
|
|
rs1037324197 CA276893774 |
48 | A>T | No |
ClinGen Ensembl |
|
|
rs897152812 CA276893777 |
49 | Q>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1294987627 CA394496733 |
50 | A>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs769320311 CA7855920 |
53 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1172229258 CA394496781 |
54 | S>G | No |
ClinGen TOPMed |
|
|
rs1596490203 CA394496785 |
54 | S>N | No |
ClinGen Ensembl |
|
|
CA394496796 rs1055358500 |
55 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA276893781 rs1055358500 |
55 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA394496812 rs1243818400 |
56 | E>G | No |
ClinGen gnomAD |
|
|
rs781775681 CA7855921 |
57 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7855922 rs113554787 |
59 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7855923 rs770628753 |
60 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs770628753 CA394496859 |
60 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA394496872 rs1231400878 |
61 | A>T | No |
ClinGen gnomAD |
|
|
CA276893790 rs949978677 |
62 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA7855924 rs138348812 |
63 | K>E | No |
ClinGen ESP ExAC TOPMed |
|
|
CA7855925 rs759236437 |
63 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs182726353 CA7855926 |
64 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs889885905 CA276893816 |
65 | M>I | No |
ClinGen Ensembl |
|
|
rs775384408 CA7855927 |
65 | M>R | No |
ClinGen ExAC gnomAD |
|
|
CA276893827 rs1006695106 |
66 | Q>R | No |
ClinGen Ensembl |
|
|
CA394496965 rs1490009565 |
68 | F>L | No |
ClinGen gnomAD |
|
|
CA919641775 rs1596490257 |
68 | F>NL* | No |
ClinGen Ensembl |
|
|
rs377224522 CA7855928 |
69 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1596490275 CA394496991 |
71 | L>P | No |
ClinGen Ensembl |
|
|
rs200601704 CA394497004 |
72 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs200601704 CA7855931 |
72 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7855933 rs750412963 |
74 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780102636 CA7855935 |
75 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1450328924 CA394497044 |
75 | G>D | No |
ClinGen gnomAD |
|
|
rs780102636 CA7855936 |
75 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA919641785 rs1596490311 |
75 | G>V | No |
ClinGen Ensembl |
|
|
rs781683971 CA7855938 |
76 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1596490325 CA394497071 |
77 | M>I | No |
ClinGen Ensembl |
|
|
CA394433074 rs1596491690 |
78 | D>A | No |
ClinGen Ensembl |
|
|
CA394497075 rs1230115486 |
78 | D>H | No |
ClinGen gnomAD |
|
|
TCGA novel rs1230115486 CA394497073 |
78 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA276852975 rs762067727 |
79 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1197780579 CA394433084 |
80 | G>R | No |
ClinGen gnomAD |
|
|
rs1478923905 CA394433095 |
81 | T>I | No |
ClinGen gnomAD |
|
|
CA394433099 rs1406313122 |
82 | V>A | No |
ClinGen TOPMed |
|
|
CA7855976 CA394433097 rs756482489 |
82 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs184106582 CA7855977 |
84 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7855978 rs754369013 |
85 | M>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276853039 rs754369013 |
85 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7855980 rs201498747 |
86 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7855981 rs188452358 |
86 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs188452358 CA394433121 |
86 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7855979 rs201498747 |
86 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1441679805 CA394433132 |
88 | P>S | No |
ClinGen gnomAD |
|
|
CA7855983 rs780865515 |
89 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747779520 CA7855984 |
89 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394433141 rs1242999757 |
90 | C>R | No |
ClinGen gnomAD |
|
|
rs556019849 CA7855985 |
90 | C>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs773059268 CA7855986 |
91 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA394433155 rs1056332627 |
92 | L>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1056332627 CA276853149 |
92 | L>R | No |
ClinGen TOPMed gnomAD |
|
|
CA276853150 rs138027517 |
94 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394433162 rs1237456703 |
94 | D>N | No |
ClinGen gnomAD |
|
|
rs149544499 CA7855988 |
95 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs774600148 CA7855989 |
98 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276853160 rs999436279 |
99 | A>T | No |
ClinGen Ensembl |
|
|
rs762543693 CA7855990 |
99 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775912542 CA7855992 |
101 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1157841723 CA394433268 |
103 | R>S | No |
ClinGen TOPMed |
|
|
rs148613771 CA7855994 |
104 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7855993 rs376635558 |
104 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA7855996 rs200558581 COSM178555 |
105 | R>C | Variant assessed as Somatic; 0.0 impact. oesophagus large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs146181243 CA7855997 |
105 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs750900917 CA7855998 |
106 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA7855999 rs754535765 |
106 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs750900917 CA394433309 |
106 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394433327 rs755730588 |
107 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755730588 CA7856002 |
107 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA7856001 rs752362899 |
107 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766057587 CA7856003 |
108 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1381550083 CA394433346 |
108 | Y>C | No |
ClinGen TOPMed |
|
|
CA7856006 rs770815168 |
109 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs749067434 CA7856005 |
109 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs144033734 CA276853313 |
110 | L>P | No |
ClinGen ESP |
|
|
CA394433380 rs1370312073 |
110 | L>V | No |
ClinGen gnomAD |
|
|
rs745785298 CA7856008 |
111 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856009 rs146614659 |
111 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1432274924 CA719819493 |
112 | G>* | No |
ClinGen TOPMed |
|
|
CA394433421 rs760821624 |
112 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA7856011 rs760821624 |
112 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA394433493 rs1596212271 |
114 | V>G | No |
ClinGen Ensembl |
|
|
CA7856014 rs541094689 |
114 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856013 rs541094689 |
114 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276853431 rs867780654 |
116 | K>* | No |
ClinGen Ensembl |
|
| TCGA novel | 116 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs149856253 CA7856017 |
118 | R>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394433566 rs1277255626 |
118 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA276853470 rs766840038 |
119 | T>N | No |
ClinGen Ensembl |
|
|
CA7856018 rs767022498 |
119 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs752197839 CA7856019 |
121 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA7856049 rs748377167 |
124 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA7856050 rs200080855 |
125 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773593803 CA7856051 |
125 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856052 rs773593803 |
125 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs563170644 CA276853766 |
126 | S>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs771175512 CA7856053 |
128 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA276853808 rs774978946 |
129 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394433882 rs774978946 |
129 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856056 rs774978946 |
129 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856057 rs759954307 |
131 | S>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 136 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7856067 rs766076071 |
138 | V>E | No |
ClinGen ExAC gnomAD |
|
|
CA7856065 rs568491292 |
138 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs568491292 CA7856066 COSM3707013 |
138 | V>M | liver [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
CA7856070 rs200216387 |
139 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs376047713 CA7856073 COSM1166009 |
139 | R>Q | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA7856072 rs200216387 |
139 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 140 | V>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7856075 rs771391082 |
142 | M>K | No |
ClinGen ExAC gnomAD |
|
|
CA394434182 rs771391082 |
142 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs370370210 CA7856074 |
142 | M>V | No |
ClinGen ESP ExAC TOPMed |
|
|
CA276853920 rs912621526 |
144 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs527372861 CA7856076 |
145 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1348962500 CA394434273 |
145 | A>T | No |
ClinGen gnomAD |
|
|
CA7856079 rs772409802 |
147 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1567431735 CA394434328 |
147 | M>R | No |
ClinGen Ensembl |
|
|
CA394434400 rs1567431743 |
149 | W>C | No |
ClinGen Ensembl |
|
|
rs761450665 CA7856081 |
150 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA7856082 rs769408100 |
151 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394434485 rs141989362 |
152 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs762692740 CA7856084 |
153 | S>* | No |
ClinGen ExAC gnomAD |
|
|
CA394434493 rs762692740 |
153 | S>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 153 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 154 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1316000907 CA394434510 |
154 | G>V | No |
ClinGen TOPMed |
|
|
CA7856086 rs751258156 |
156 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA394434568 rs1457652244 |
157 | F>Y | No |
ClinGen gnomAD |
|
| TCGA novel | 158 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1199745075 CA394434618 |
160 | V>M | No |
ClinGen gnomAD |
|
|
rs550602066 CA7856091 |
161 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201922977 CA7856089 |
161 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA7856088 rs767391650 |
161 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
rs757408855 CA394434662 |
163 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757408855 CA7856093 |
163 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856092 rs757157877 |
163 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1157448643 CA394434678 |
164 | Q>H | No |
ClinGen TOPMed |
|
|
rs1052278118 CA276854101 |
165 | G>C | No |
ClinGen TOPMed gnomAD |
|
|
rs746188090 CA7856095 |
165 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs772441481 COSM3712015 CA7856096 |
167 | E>K | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs61747721 CA7856097 |
168 | P>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856098 rs61747721 |
168 | P>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs781135595 CA276854183 |
169 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA7856100 rs772841152 |
170 | I>L | No |
ClinGen ExAC gnomAD |
|
|
COSM1215290 rs538501940 CA7856101 |
173 | D>N | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC gnomAD |
|
CA394434801 rs1596212768 |
174 | F>L | No |
ClinGen Ensembl |
|
|
CA7856102 rs368444509 |
176 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs774019392 CA7856103 |
176 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856105 rs138287671 |
177 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856106 rs752637822 |
177 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA394434867 rs1312183317 |
181 | D>G | No |
ClinGen TOPMed |
|
|
CA7856107 rs200603611 |
181 | D>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs764217127 CA7856108 |
184 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs764217127 CA7856109 |
184 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA276854211 rs374014120 CA394434954 |
186 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856110 COSM1301901 rs757540476 |
186 | D>N | urinary_tract Variant assessed as Somatic; 4.629e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7856112 rs202155408 |
187 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1421440926 CA394434967 |
187 | G>V | No |
ClinGen gnomAD |
|
|
rs202155408 CA276854221 |
187 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747582945 CA7856115 |
188 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780497795 CA7856114 |
188 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1382995646 CA394434994 |
190 | G>S | No |
ClinGen TOPMed |
|
|
CA7856116 rs755526133 |
191 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs1291915981 CA394435030 |
192 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs572174175 CA276854266 |
193 | A>T | No |
ClinGen 1000Genomes gnomAD |
|
|
rs770430143 CA7856119 |
193 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs773892966 CA7856120 |
194 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs1004972120 CA276854270 |
194 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA7856122 rs771923378 |
196 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1260539871 CA394435165 |
198 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
COSM333273 CA7856123 rs775254400 |
198 | P>L | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
COSM1708650 rs1260539871 CA394435167 |
198 | P>S | skin [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs201651138 CA276854288 |
199 | G>V | No |
ClinGen 1000Genomes gnomAD |
|
|
CA7856126 rs61753772 |
200 | E>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856125 rs368120528 |
200 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394435220 rs761819955 |
201 | H>D | No |
ClinGen ExAC gnomAD |
|
|
rs761819955 CA7856127 |
201 | H>N | No |
ClinGen ExAC gnomAD |
|
|
rs765302161 CA7856128 |
201 | H>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed |
|
CA7856129 rs574492122 |
202 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276854308 rs985290664 |
203 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7856130 rs758686087 |
203 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA394435295 rs1320610581 |
204 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs766904499 CA7856131 |
204 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA7856133 rs755577652 |
205 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA7856135 rs748634190 |
206 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA276854314 rs912661940 |
206 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA394435343 rs1403511045 |
207 | T>A | No |
ClinGen TOPMed |
|
| TCGA novel | 210 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778484081 COSM471656 CA7856138 |
211 | D>N | kidney Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA276854332 rs748873050 |
212 | E>* | No |
ClinGen Ensembl |
|
|
rs997765901 CA276854349 |
212 | E>D | No |
ClinGen Ensembl |
|
|
CA276854325 rs748873050 |
212 | E>K | No |
ClinGen Ensembl |
|
|
CA276854350 rs1029683445 |
213 | E>A | No |
ClinGen Ensembl |
|
|
rs972743873 CA276854354 |
215 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
CA7856139 rs148040455 |
216 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394435498 rs148040455 |
216 | T>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394435499 rs148040455 |
216 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394439855 CA394439854 rs141712835 |
221 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1176761318 CA394435568 |
221 | D>H | No |
ClinGen gnomAD |
|
|
rs762354889 CA7856214 |
222 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762354889 CA7856213 |
222 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856215 rs150589325 |
222 | G>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs375193851 CA7856218 |
223 | E>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856220 rs755712834 |
223 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856217 rs375193851 |
223 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1444156559 CA394439867 |
224 | G>E | No |
ClinGen TOPMed |
|
|
rs1475388915 CA394439873 |
225 | T>N | No |
ClinGen gnomAD |
|
|
rs757079699 CA7856222 |
226 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA394439879 rs1596220691 |
226 | D>G | No |
ClinGen Ensembl |
|
|
rs61747718 CA7856221 |
226 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394439877 rs61747718 |
226 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856223 rs200058415 |
228 | F>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1445931404 CA394439900 |
230 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA394439925 rs1356375574 |
232 | V>A | No |
ClinGen gnomAD |
|
|
CA394439919 rs1312451355 |
232 | V>L | No |
ClinGen gnomAD |
|
|
rs779993445 CA276860545 |
233 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779993445 CA394439936 |
233 | H>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856226 rs779993445 |
233 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs146192671 CA394440024 |
237 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394440012 rs1276682870 |
237 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA394440043 rs1275733886 |
238 | A>D | No |
ClinGen gnomAD |
|
|
CA7856228 rs139070896 |
238 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1279044495 CA394440057 |
239 | L>P | No |
ClinGen gnomAD |
|
|
rs1279044495 CA394440059 |
239 | L>R | No |
ClinGen gnomAD |
|
|
rs777017049 CA394440049 |
239 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA7856231 rs770091728 |
240 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA394440065 rs1189704282 |
240 | G>R | No |
ClinGen gnomAD |
|
|
CA394440064 rs1189704282 |
240 | G>S | No |
ClinGen gnomAD |
|
|
rs773718466 CA7856232 |
241 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA7856233 rs150670162 |
242 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs771674942 CA7856234 |
243 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA276860604 rs868820868 |
244 | S>F | No |
ClinGen Ensembl |
|
|
rs1173059925 CA394440156 |
246 | A>S | No |
ClinGen gnomAD |
|
|
rs1376200725 CA394440181 |
247 | P>H | No |
ClinGen gnomAD |
|
|
CA7856235 CA7856236 rs774842752 |
248 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA394440201 rs1255419852 |
248 | N>S | No |
ClinGen TOPMed |
|
|
rs754304077 CA394440230 |
250 | I>S | No |
ClinGen ExAC gnomAD |
|
|
rs754304077 CA7856238 |
250 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1431959403 CA394440239 |
251 | M>L | No |
ClinGen gnomAD |
|
|
rs1431959403 CA394440236 |
251 | M>V | No |
ClinGen gnomAD |
|
|
CA7856239 rs761714073 |
252 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA394440275 rs1366071619 |
252 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA7856240 rs765059305 |
254 | F>Y | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 255 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1348062787 CA394440340 |
256 | Q>* | No |
ClinGen gnomAD |
|
|
rs1212493061 CA394440348 |
256 | Q>R | No |
ClinGen gnomAD |
|
|
rs1356414032 CA394440360 |
257 | G>S | No |
ClinGen TOPMed |
|
|
CA7856243 rs143925847 |
258 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA7856244 rs143925847 |
258 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1243675412 CA394440404 |
259 | V>M | No |
ClinGen gnomAD |
|
|
rs1193000968 CA394440416 |
260 | G>R | No |
ClinGen gnomAD |
|
|
rs777990462 CA394440434 |
261 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs1376345142 CA394440436 |
261 | D>E | No |
ClinGen TOPMed |
|
|
rs777990462 CA7856249 |
261 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs770145033 CA7856248 |
261 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1259639223 CA394440447 |
262 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs749860230 CA7856250 |
262 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs915980854 CA394440465 |
263 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs771314509 CA7856251 |
264 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1348563322 CA394440489 |
265 | Y>H | No |
ClinGen gnomAD |
|
|
CA7856252 rs192194204 |
266 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs760286558 CA7856254 |
266 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856253 rs760286558 |
266 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856257 rs201815738 |
267 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394440534 rs1349469020 |
268 | S>C | No |
ClinGen gnomAD |
|
|
rs1192100090 CA394440558 |
270 | D>E | No |
ClinGen gnomAD |
|
|
rs750161184 CA7856258 |
270 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA394440575 rs1361734416 |
271 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs1286077191 CA394440563 |
271 | D>Y | No |
ClinGen gnomAD |
|
|
CA7856259 rs374797521 |
272 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856260 rs766255727 |
272 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766255727 CA394440585 |
272 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394440591 rs755060073 |
273 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs755060073 CA7856262 COSM1708652 |
273 | D>N | Variant assessed as Somatic; 0.0 impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA7856264 rs151299530 |
275 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856265 rs756311096 |
276 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778242846 CA7856266 |
276 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
rs201126272 CA276860786 |
277 | Q>P | No |
ClinGen TOPMed |
|
|
rs755424909 CA7856268 |
279 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1397365961 CA394440699 |
280 | G>R | No |
ClinGen gnomAD |
|
|
CA394440704 rs1397365961 |
280 | G>W | No |
ClinGen gnomAD |
|
|
CA276861047 rs765568487 |
282 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs140235913 CA276861024 COSM269604 |
282 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA TOPMed gnomAD |
|
CA7856303 rs765568487 |
282 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394440946 rs1229590714 |
283 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA7856305 rs758796076 |
287 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1211793876 CA394441063 |
288 | D>E | No |
ClinGen gnomAD |
|
|
rs1282761020 CA394441083 |
289 | K>N | No |
ClinGen gnomAD |
|
|
rs780728650 CA7856306 |
290 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs780728650 CA394441092 |
290 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA7856307 rs747456830 |
292 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA7856309 rs377077970 |
294 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856310 rs377077970 |
294 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs755580283 CA7856308 |
294 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770589525 CA7856311 |
297 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA7856312 rs199763197 |
298 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856315 rs775412196 |
299 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760658044 CA7856316 |
301 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA7856317 rs768677990 |
302 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768677990 CA7856318 |
302 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370333247 CA7856320 |
304 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1370271604 CA394441591 |
308 | S>G | No |
ClinGen gnomAD |
|
|
CA276861438 rs1032151232 |
309 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
rs372114614 CA7856348 |
311 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394441959 rs1232728711 |
313 | I>N | No |
ClinGen TOPMed |
|
|
CA394441983 rs1375760919 |
314 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA7856350 rs756768550 |
316 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394442052 rs1341746724 |
316 | R>L | No |
ClinGen TOPMed |
|
|
rs778391131 CA7856351 |
317 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394442072 rs1356581391 |
317 | C>Y | No |
ClinGen gnomAD |
|
|
rs1235611940 CA394442083 |
318 | E>K | No |
ClinGen gnomAD |
|
|
CA7856353 rs758025741 |
319 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394442200 rs1251431431 |
321 | F>V | No |
ClinGen gnomAD |
|
|
rs557799311 CA276861465 |
322 | D>E | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs146563349 CA394442254 |
323 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs146563349 CA7856356 |
323 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs146563349 CA7856355 |
323 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs781202606 CA7856357 |
324 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA394442294 rs1183477855 |
325 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1183477855 CA394442291 |
325 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA394442299 rs1417336355 |
325 | A>V | No |
ClinGen gnomAD |
|
|
rs1041610040 CA276861493 |
326 | N>S | No |
ClinGen Ensembl |
|
|
rs770060905 CA7856359 |
327 | I>N | No |
ClinGen ExAC gnomAD |
|
|
rs145736176 CA7856362 |
328 | R>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1312505851 CA394442365 |
328 | R>Q | No |
ClinGen gnomAD |
|
|
rs774389844 CA7856363 |
329 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA7856364 rs759963138 |
330 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA394442419 rs1268826522 |
331 | T>S | No |
ClinGen gnomAD |
|
| TCGA novel | 332 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394443976 rs778845474 |
336 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856400 rs778845474 |
336 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276862390 rs79355508 |
337 | P>H | No |
ClinGen TOPMed |
|
|
CA394443988 rs79355508 |
337 | P>L | No |
ClinGen TOPMed |
|
|
rs999334002 CA276862395 |
338 | W>* | No |
ClinGen Ensembl |
|
|
rs780284435 CA7856403 |
338 | W>* | No |
ClinGen ExAC |
|
|
CA7856402 rs772154857 |
338 | W>R | No |
ClinGen ExAC gnomAD |
|
|
rs747395216 CA7856404 |
339 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394444022 rs1269834913 |
340 | W>* | No |
ClinGen gnomAD |
|
|
CA394444026 rs1269834913 |
340 | W>L | No |
ClinGen gnomAD |
|
|
CA7856405 rs768950696 |
341 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA276862444 rs373228557 |
344 | P>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs773709041 COSM1189153 CA7856409 |
345 | S>F | lung Variant assessed as Somatic; 0.0 impact. breast [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA394444090 rs371136994 |
346 | G>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371136994 CA7856410 |
346 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856411 rs767105329 |
348 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777832748 CA7856412 |
351 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs777832748 CA276862478 |
351 | P>Q | No |
ClinGen ExAC gnomAD |
|
|
CA276862473 rs112131450 |
351 | P>S | No |
ClinGen Ensembl |
|
|
rs59807543 CA394444155 |
352 | R>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856414 rs763980250 |
352 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA394444164 rs1406628646 |
353 | P>T | No |
ClinGen gnomAD |
|
|
rs1334779412 CA394444175 |
354 | A>T | No |
ClinGen gnomAD |
|
|
rs143151689 CA7856417 |
355 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856418 rs143151689 |
355 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394444190 rs1335500816 |
355 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA7856419 rs758456987 |
356 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394444211 rs1361599463 |
357 | H>P | No |
ClinGen TOPMed |
|
|
CA7856420 rs780266361 |
357 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394444222 rs1265981319 |
358 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA394444220 rs1265981319 |
358 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1358509504 CA394444224 |
358 | R>H | No |
ClinGen gnomAD |
|
|
rs1358509504 CA394444228 |
358 | R>P | No |
ClinGen gnomAD |
|
|
CA394444218 rs1265981319 |
358 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA7856421 rs148242288 |
361 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394444285 rs1272441809 |
362 | G>V | No |
ClinGen gnomAD |
|
|
rs1475244352 CA394444287 |
363 | L>M | No |
ClinGen TOPMed |
|
|
CA394444298 rs769075380 |
364 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs1475094921 CA394444305 |
364 | P>R | No |
ClinGen gnomAD |
|
|
CA7856422 rs769075380 |
364 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs781523004 CA394444313 |
365 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856426 rs781523004 |
365 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856424 rs1555440303 |
365 | A>P | No |
ClinGen Ensembl |
|
|
CA7856423 rs1555440303 |
365 | A>T | No |
ClinGen Ensembl |
|
|
CA276862576 rs865802671 |
366 | Q>* | No |
ClinGen Ensembl |
|
|
CA7856429 rs527931927 |
366 | Q>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs527931927 CA276862580 |
366 | Q>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1596222573 CA394444342 |
367 | V>G | No |
ClinGen Ensembl |
|
|
rs1283810276 CA394444353 |
368 | R>S | No |
ClinGen TOPMed |
|
|
rs1596222589 CA394444365 |
369 | V>G | No |
ClinGen Ensembl |
|
|
CA394444369 rs1309487718 |
370 | V>L | No |
ClinGen gnomAD |
|
|
CA394444399 rs1313209293 |
372 | A>D | No |
ClinGen gnomAD |
|
|
rs1413975261 CA394444395 |
372 | A>T | No |
ClinGen gnomAD |
|
|
CA7856433 rs760395064 |
374 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394444459 rs764029492 |
376 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201851412 CA394444467 |
376 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856437 rs201851412 |
376 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs201851412 CA7856435 |
376 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394444461 rs764029492 |
376 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856439 rs765111576 |
378 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA394444509 rs561431578 |
378 | R>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs561431578 CA7856440 |
378 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1485528778 CA394444533 |
379 | D>E | No |
ClinGen gnomAD |
|
|
rs1429051185 CA394444513 |
379 | D>N | No |
ClinGen TOPMed |
|
|
CA7856441 rs758411367 |
380 | G>C | No |
ClinGen ExAC gnomAD |
|
|
rs758411367 CA276862641 |
380 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs758411367 CA394444539 |
380 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1324397220 CA394444545 |
380 | G>V | No |
ClinGen TOPMed |
|
|
CA394444553 rs766441316 |
381 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA7856443 rs751837693 |
381 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs1317197379 CA394444582 |
383 | L>I | No |
ClinGen TOPMed |
|
|
CA394444599 rs1449566330 |
384 | L>H | No |
ClinGen gnomAD |
|
|
rs530350084 CA7856445 |
385 | F>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1183866581 CA394444645 |
386 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA7856446 rs748489778 |
387 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA394444745 rs1238741492 |
388 | P>L | No |
ClinGen gnomAD |
|
|
CA276862857 rs1057455857 |
389 | Q>L | No |
ClinGen Ensembl |
|
|
rs1331823109 CA394444821 |
392 | V>E | No |
ClinGen gnomAD |
|
|
CA7856466 rs375829279 |
393 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs749813103 CA7856468 |
395 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856470 rs779523692 |
396 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs779523692 CA276862875 |
396 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs566070465 CA7856469 |
396 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs899409659 CA276862876 |
397 | Q>* | No |
ClinGen TOPMed |
|
|
CA394444899 rs1269064787 |
397 | Q>H | No |
ClinGen gnomAD |
|
|
rs1416984374 CA394444914 |
398 | L>R | No |
ClinGen gnomAD |
|
|
CA394444945 rs1412517369 |
400 | G>D | No |
ClinGen gnomAD |
|
|
CA394444938 rs1596222945 |
400 | G>S | No |
ClinGen Ensembl |
|
|
rs200636618 CA7856471 |
401 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276862885 rs533810798 |
401 | G>R | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA394444955 rs533810798 |
401 | G>W | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs1458501160 CA394444972 |
402 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1458501160 CA394444969 |
402 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1295401052 CA394444976 |
402 | A>V | No |
ClinGen gnomAD |
|
|
rs747830338 CA394445056 |
407 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747830338 CA7856475 |
407 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1320552699 CA394445059 |
407 | E>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394445108 rs1369852880 |
409 | G>R | No |
ClinGen TOPMed |
|
|
rs762914325 CA7856478 |
411 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs762914325 CA394445143 |
411 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA7856477 rs573486213 |
411 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1473461622 CA394445156 |
412 | P>Q | No |
ClinGen gnomAD |
|
|
rs536071062 CA394445187 |
414 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs536071062 CA7856483 |
414 | E>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856485 rs764406521 |
415 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA394445215 rs1166982595 |
415 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA7856486 rs369222076 |
416 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1173267248 CA394445238 |
416 | V>M | No |
ClinGen TOPMed |
|
|
CA394445272 rs1372746657 |
417 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA394445263 rs1308881425 |
417 | D>G | No |
ClinGen gnomAD |
|
|
rs757650170 CA7856487 |
419 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA394445288 rs1196516567 |
419 | V>M | No |
ClinGen gnomAD |
|
|
CA394445304 rs1258813686 |
420 | F>L | No |
ClinGen TOPMed |
|
|
CA394445374 rs1314251055 |
422 | W>* | No |
ClinGen gnomAD |
|
|
CA7856491 rs758772599 |
422 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA7856492 rs780736213 |
423 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA394445402 rs1227145741 |
424 | Q>* | No |
ClinGen gnomAD |
|
|
CA394445439 rs1437169253 |
425 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
rs747800563 CA7856493 |
426 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA7856495 rs769452177 |
428 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856494 rs769452177 |
428 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1567129417 CA394445542 |
431 | V>D | No |
ClinGen Ensembl |
|
|
CA276862999 rs749103327 |
431 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856496 rs749103327 |
431 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856498 rs371274366 |
432 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
rs770653878 CA7856497 |
432 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394445596 rs1392225414 |
434 | R>P | No |
ClinGen gnomAD |
|
|
rs1169425296 CA394445590 |
434 | R>W | No |
ClinGen gnomAD |
|
|
CA394445622 rs1360179846 |
435 | Q>H | No |
ClinGen gnomAD |
|
|
CA394445603 rs1175785481 |
435 | Q>K | No |
ClinGen gnomAD |
|
|
rs1293831385 CA394445665 |
437 | W>* | No |
ClinGen TOPMed |
|
|
CA394445672 rs1287649952 |
438 | R>C | No |
ClinGen gnomAD |
|
|
rs950404219 CA394445704 |
439 | Y>* | No |
ClinGen TOPMed gnomAD |
|
|
rs764403741 CA7856504 |
440 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760635037 CA394445709 |
440 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs760635037 CA7856503 |
440 | D>N | Variant assessed as Somatic; 0.0001485 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs913189493 CA276863040 |
441 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
rs754058762 CA7856505 |
441 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs913189493 CA276863030 |
441 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs913189493 CA394445734 |
441 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA394445764 rs1426845461 |
442 | A>V | No |
ClinGen gnomAD |
|
|
rs1418573772 CA394445786 |
444 | A>T | No |
ClinGen TOPMed |
|
|
CA394445797 rs1418583637 |
444 | A>V | No |
ClinGen TOPMed |
|
|
rs765690485 CA394445804 |
445 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1464421435 CA394445811 |
445 | R>P | No |
ClinGen gnomAD |
|
|
CA7856507 rs765690485 |
445 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856508 rs751022068 |
446 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs758948440 CA7856509 |
446 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758948440 CA7856510 |
446 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752283507 CA7856511 |
447 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 448 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394445859 rs1213126744 |
448 | P>R | No |
ClinGen TOPMed |
|
|
rs1262116559 CA394445850 |
448 | P>S | No |
ClinGen TOPMed |
|
|
CA7856514 rs748871459 |
449 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276863088 rs974525981 |
451 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1458243510 CA394445925 |
452 | R>C | No |
ClinGen gnomAD |
|
|
rs1458243510 CA394445923 |
452 | R>G | No |
ClinGen gnomAD |
|
|
rs202172974 CA7856515 |
453 | D>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856516 rs199631635 |
454 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394445996 rs1287340409 |
455 | S>R | No |
ClinGen TOPMed |
|
|
CA394446005 rs1273930283 |
456 | L>F | No |
ClinGen gnomAD |
|
|
rs909214033 CA276863118 |
457 | W>C | No |
ClinGen Ensembl |
|
|
CA394446039 rs1456858675 |
458 | E>K | No |
ClinGen TOPMed |
|
|
rs1368001754 CA394446069 |
459 | G>A | No |
ClinGen gnomAD |
|
|
CA7856518 rs772077744 |
460 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1281911650 CA394446084 |
460 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA276863131 rs979400890 |
461 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA394446095 rs979400890 |
461 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7856521 rs760825102 |
462 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856520 rs760825102 |
462 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856519 rs775245523 |
462 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA276863152 rs934624761 |
463 | S>C | No |
ClinGen TOPMed gnomAD |
|
| rs1328316597 | 463 | S>P | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7856522 rs777062850 |
464 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs564697763 CA7856524 |
466 | D>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762110660 CA394446168 |
466 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA7856523 rs762110660 |
466 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
rs899125802 CA276863193 |
468 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs763183526 CA7856527 |
469 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763183526 CA7856526 |
469 | V>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856525 rs773677833 |
469 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394446230 rs1464134403 |
470 | S>N | No |
ClinGen TOPMed |
|
|
CA7856528 CA7856530 rs751951982 |
470 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA7856531 rs753539682 |
471 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA7856532 rs756872857 |
472 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1438183906 CA394446270 |
472 | A>T | No |
ClinGen gnomAD |
|
|
rs756872857 CA7856533 |
472 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1432938670 CA394446378 |
473 | G>D | No |
ClinGen gnomAD |
|
|
CA394446412 rs1567129816 |
476 | Y>C | No |
ClinGen Ensembl |
|
|
rs754837029 COSM557755 CA7856557 |
477 | F>L | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA394446426 rs1476809919 |
477 | F>S | No |
ClinGen TOPMed |
|
|
CA394446496 rs1230886722 |
480 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
rs781232240 CA7856558 |
481 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7856559 rs748257213 |
482 | H>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1201501165 CA394446582 |
484 | W>* | No |
ClinGen gnomAD |
|
|
CA394446640 rs1246889782 |
487 | P>L | No |
ClinGen gnomAD |
|
|
rs1186061804 CA394446634 |
487 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA7856562 rs773571920 |
488 | K>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 488 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7856564 rs771382761 |
489 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276863471 rs1045751560 |
489 | N>Y | No |
ClinGen TOPMed |
|
|
rs1344547461 CA394446705 |
491 | I>S | No |
ClinGen TOPMed |
|
|
CA394446696 rs1172975271 |
491 | I>V | No |
ClinGen gnomAD |
|
|
rs993068660 CA394446768 |
494 | E>K | No |
ClinGen gnomAD |
|
|
CA276863478 rs993068660 |
494 | E>Q | No |
ClinGen gnomAD |
|
|
CA276863483 rs201570902 |
495 | P>L | No |
ClinGen 1000Genomes gnomAD |
|
|
rs201570902 CA394446818 |
495 | P>Q | No |
ClinGen 1000Genomes gnomAD |
|
|
rs200340446 CA7856568 |
497 | A>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759906251 CA7856566 |
497 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200340446 CA7856567 |
497 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7856569 rs761320147 |
498 | P>R | No |
ClinGen ExAC |
|
|
CA394446865 rs1299524141 |
498 | P>S | No |
ClinGen gnomAD |
|
|
CA394446876 rs750150544 |
499 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs1258151805 CA394446896 |
499 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs750150544 CA7856571 |
499 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA7856572 rs762488230 |
500 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1266924341 CA394446938 |
501 | M>I | No |
ClinGen gnomAD |
|
|
rs766234133 CA276863545 CA7856573 |
501 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 503 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394447005 rs1206496423 |
504 | N>K | No |
ClinGen gnomAD |
|
|
CA394446990 rs1567129930 |
504 | N>S | No |
ClinGen Ensembl |
|
|
CA276863549 rs948740319 |
505 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
CA394447101 rs1432258883 |
508 | C>Y | No |
ClinGen gnomAD |
|
|
CA394447346 rs1454898173 |
509 | P>L | No |
ClinGen TOPMed |
|
|
CA394447337 rs1158709874 |
509 | P>S | No |
ClinGen TOPMed |
|
|
CA394447352 rs1199230829 |
510 | A>P | No |
ClinGen gnomAD |
|
|
rs1199230829 CA394447354 |
510 | A>S | No |
ClinGen gnomAD |
|
|
CA7856576 rs370097888 |
512 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394448105 rs1389437133 |
513 | S>A | No |
ClinGen gnomAD |
|
|
rs528502666 CA276863609 |
514 | G>C | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA276863589 rs528502666 |
514 | G>S | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA7856577 rs201420558 |
515 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856578 rs567271071 |
516 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs199549053 CA7856579 |
516 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs199549053 CA394448156 |
516 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394448161 rs1185119383 |
517 | A>P | No |
ClinGen TOPMed |
|
|
CA394448163 rs1185119383 |
517 | A>S | No |
ClinGen TOPMed |
|
|
rs556037619 CA7856580 |
517 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1289570429 CA394448187 |
518 | P>L | No |
ClinGen gnomAD |
|
|
rs1263182130 CA394448191 |
519 | R>K | No |
ClinGen gnomAD |
|
|
CA394448192 rs1263182130 |
519 | R>T | No |
ClinGen gnomAD |
|
|
rs1210133100 CA394448210 |
520 | P>L | No |
ClinGen gnomAD |
|
|
rs1487915346 CA394448200 |
520 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA7856585 rs569853317 |
521 | P>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856584 rs569853317 |
521 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856583 rs746233138 |
521 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1420824665 CA394448237 |
522 | K>I | No |
ClinGen gnomAD |
|
|
rs1412565967 CA394448223 |
522 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs201557156 CA394448280 |
525 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs201557156 CA7856588 |
525 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1291886326 CA394448276 |
525 | P>S | No |
ClinGen TOPMed |
|
| rs747774238 | 526 | V>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs995856113 CA276863687 |
526 | V>M | No |
ClinGen gnomAD |
|
|
CA276863688 rs1022019577 |
527 | S>P | No |
ClinGen TOPMed |
|
|
CA394448300 rs1383504135 |
527 | S>Y | No |
ClinGen TOPMed |
|
|
CA394448311 rs1385840335 |
528 | E>A | No |
ClinGen TOPMed |
|
|
CA276863690 rs867374421 |
528 | E>K | No |
ClinGen Ensembl |
|
|
CA394448337 rs1352806231 |
530 | C>Y | No |
ClinGen gnomAD |
|
|
rs772562593 CA394448349 |
531 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394448347 rs772562593 |
531 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772562593 CA7856589 |
531 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs978285162 CA276863698 |
533 | Q>P | No |
ClinGen Ensembl |
|
|
rs1245036230 CA394448397 |
534 | C>* | No |
ClinGen gnomAD |
|
|
CA394448389 rs1320649800 |
534 | C>G | No |
ClinGen gnomAD |
|
|
CA394448387 rs1320649800 |
534 | C>R | No |
ClinGen gnomAD |
|
|
rs558651639 CA276863702 |
537 | N>S | No |
ClinGen 1000Genomes |
|
|
CA394448451 rs1162004194 |
538 | Q>E | No |
ClinGen gnomAD |
|
|
CA7856590 rs762482944 |
538 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA394448482 rs1161315812 |
540 | A>G | No |
ClinGen TOPMed |
|
|
CA394448478 rs1252285217 |
540 | A>T | No |
ClinGen gnomAD |
|
|
rs7188234 CA7856592 |
541 | G>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7856593 rs541071753 |
542 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs541071753 CA394448499 |
542 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA394448505 rs1424515319 |
542 | R>H | No |
ClinGen gnomAD |
|
|
rs372753938 CA7856594 |
543 | W>C | No |
ClinGen ESP ExAC |
|
|
CA276863725 rs555289844 |
544 | P>L | No |
ClinGen 1000Genomes gnomAD |
|
|
CA394448533 rs555289844 |
544 | P>R | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1158203525 CA394448529 |
544 | P>S | No |
ClinGen gnomAD |
|
|
CA394448544 rs1169547637 |
545 | A>G | No |
ClinGen gnomAD |
|
|
CA7856595 rs752738148 |
545 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1446442707 CA394448574 |
548 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394448571 rs1446442707 |
548 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7856596 rs756097083 |
550 | L>P | No |
ClinGen ExAC |
|
|
rs980793559 CA394448613 |
552 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
CA7856598 rs753887651 |
553 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA394448629 rs575147898 |
553 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856597 rs575147898 |
553 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1272246645 CA394448637 |
554 | L>V | No |
ClinGen TOPMed |
|
|
CA394448646 rs1229201329 |
555 | L>M | No |
ClinGen TOPMed |
|
|
CA394448653 rs1362548945 |
555 | L>P | No |
ClinGen TOPMed |
|
|
CA276863779 rs939625737 |
556 | V>G | No |
ClinGen TOPMed |
|
|
rs917512177 CA276863773 |
556 | V>L | No |
ClinGen Ensembl |
|
|
CA394448671 rs544102381 |
557 | G>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs544102381 CA7856601 |
557 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1207899429 CA394448664 |
557 | G>R | No |
ClinGen gnomAD |
|
|
CA394448673 rs544102381 |
557 | G>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs528328005 CA394448681 |
558 | G>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7856602 rs758822516 |
558 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs528328005 CA7856603 |
558 | G>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276863823 rs980072126 |
560 | A>T | No |
ClinGen TOPMed |
|
|
CA394448697 rs1246268969 |
560 | A>V | No |
ClinGen gnomAD |
|
|
rs1449084648 CA394448706 |
561 | S>A | No |
ClinGen gnomAD |
|
|
rs1189517297 CA394448716 |
562 | R>C | No |
ClinGen gnomAD |
|
|
CA394448718 rs1318499822 |
562 | R>H | No |
ClinGen TOPMed gnomAD |
No associated diseases with Q9NPA2
9 regional properties for Q9NPA2
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Hemopexin-like domain | 314 - 508 | IPR000585 |
| domain | Peptidase M10, metallopeptidase | 115 - 280 | IPR001818 |
| domain | Peptidoglycan binding-like | 26 - 85 | IPR002477 |
| domain | Peptidase, metallopeptidase | 111 - 281 | IPR006026 |
| repeat | Hemopexin-like repeats | 314 - 365 | IPR018487-1 |
| repeat | Hemopexin-like repeats | 367 - 412 | IPR018487-2 |
| repeat | Hemopexin-like repeats | 413 - 462 | IPR018487-3 |
| repeat | Hemopexin-like repeats | 462 - 508 | IPR018487-4 |
| domain | Peptidase M10A, catalytic domain | 115 - 280 | IPR033739 |
6 GO annotations of cellular component
| Name | Definition |
|---|---|
| anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
| extracellular matrix | A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| specific granule membrane | The lipid bilayer surrounding a specific granule, a granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. |
| zinc ion binding | Binding to a zinc ion (Zn). |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| collagen catabolic process | The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells. |
| extracellular matrix organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. |
| hard palate development | The biological process whose specific outcome is the progression of the hard palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. The hard palate is the anterior portion of the palate consisting of bone and mucous membranes. |
| inflammatory response | The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages. |
| proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
17 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q3SZV7 | HPX | Hemopexin | Bos taurus (Bovine) | PR |
| O77656 | MMP13 | Collagenase 3 | Bos taurus (Bovine) | PR |
| Q9GLE5 | MMP2 | 72 kDa type IV collagenase | Bos taurus (Bovine) | PR |
| Q90611 | MMP2 | 72 kDa type IV collagenase | Gallus gallus (Chicken) | PR |
| Q8MPP3 | Mmp2 | Matrix metalloproteinase-2 | Drosophila melanogaster (Fruit fly) | PR |
| P04004 | VTN | Vitronectin | Homo sapiens (Human) | PR |
| P45452 | MMP13 | Collagenase 3 | Homo sapiens (Human) | PR |
| Q9H239 | MMP28 | Matrix metalloproteinase-28 | Homo sapiens (Human) | PR |
| Q99542 | MMP19 | Matrix metalloproteinase-19 | Homo sapiens (Human) | PR |
| P34960 | Mmp12 | Macrophage metalloelastase | Mus musculus (Mouse) | PR |
| P33435 | Mmp13 | Collagenase 3 | Mus musculus (Mouse) | PR |
| P33434 | Mmp2 | 72 kDa type IV collagenase | Mus musculus (Mouse) | PR |
| P28862 | Mmp3 | Stromelysin-1 | Mus musculus (Mouse) | PR |
| P23097 | Mmp13 | Collagenase 3 | Rattus norvegicus (Rat) | PR |
| Q63341 | Mmp12 | Macrophage metalloelastase | Rattus norvegicus (Rat) | PR |
| P33436 | Mmp2 | 72 kDa type IV collagenase | Rattus norvegicus (Rat) | PR |
| Q6PHG2 | hpx | Hemopexin | Danio rerio (Zebrafish) (Brachydanio rerio) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MRLRLRLLAL | LLLLLAPPAR | APKPSAQDVS | LGVDWLTRYG | YLPPPHPAQA | QLQSPEKLRD |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AIKVMQRFAG | LPETGRMDPG | TVATMRKPRC | SLPDVLGVAG | LVRRRRRYAL | SGSVWKKRTL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TWRVRSFPQS | SQLSQETVRV | LMSYALMAWG | MESGLTFHEV | DSPQGQEPDI | LIDFARAFHQ |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DSYPFDGLGG | TLAHAFFPGE | HPISGDTHFD | DEETWTFGSK | DGEGTDLFAV | AVHEFGHALG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LGHSSAPNSI | MRPFYQGPVG | DPDKYRLSQD | DRDGLQQLYG | KAPQTPYDKP | TRKPLAPPPQ |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PPASPTHSPS | FPIPDRCEGN | FDAIANIRGE | TFFFKGPWFW | RLQPSGQLVS | PRPARLHRFW |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EGLPAQVRVV | QAAYARHRDG | RILLFSGPQF | WVFQDRQLEG | GARPLTELGL | PPGEEVDAVF |
| 430 | 440 | 450 | 460 | 470 | 480 |
| SWPQNGKTYL | VRGRQYWRYD | EAAARPDPGY | PRDLSLWEGA | PPSPDDVTVS | NAGDTYFFKG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| AHYWRFPKNS | IKTEPDAPQP | MGPNWLDCPA | PSSGPRAPRP | PKATPVSETC | DCQCELNQAA |
| 550 | 560 | ||||
| GRWPAPIPLL | LLPLLVGGVA | SR |