P41002
Gene name |
CCNF (FBX1, FBXO1) |
Protein name |
Cyclin-F |
Names |
F-box only protein 1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:899 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for P41002
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-P41002-F1 | Predicted | AlphaFoldDB |
696 variants for P41002
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA276807492 rs944306963 VAR_085177 |
3 | S>G | FTDALS5; unknown pathological significance; impaired degradation by the ubiquitin proteasome system (UPS) [UniProt] | Yes |
ClinGen UniProt TOPMed dbSNP gnomAD |
|
VAR_085178 rs1465313712 CA394342114 RCV001262761 |
97 | K>R | FTDALS5; unknown pathological significance; impaired degradation by the ubiquitin proteasome system (UPS) [UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
VAR_085179 CA7842114 rs745821656 |
181 | T>I | FTDALS5; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
|
VAR_085180 rs1371569927 CA394343898 RCV001281086 |
195 | S>R | Frontotemporal dementia and/or amyotrophic lateral sclerosis 5 FTDALS5; impaired degradation by the ubiquitin proteasome system (UPS) [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt dbSNP gnomAD |
|
VAR_085181 RCV001281087 CA276812362 rs954539468 |
392 | R>T | Frontotemporal dementia and/or amyotrophic lateral sclerosis 5 FTDALS5; unknown pathological significance; impaired degradation by the ubiquitin proteasome system (UPS) [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
VAR_085182 CA7842604 rs760953006 |
509 | S>P | FTDALS5; unknown pathological significance; impaired degradation by the ubiquitin proteasome system (UPS) [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
|
rs756914411 VAR_085183 CA7842653 |
543 | T>I | FTDALS5; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
RCV001281085 VAR_085184 rs778264897 CA7842751 |
621 | S>G | Frontotemporal dementia and/or amyotrophic lateral sclerosis 5 FTDALS5; increased 'Lys-48'-linked polyubiquitination of proteins targeted for proteasomal degradation, but no increase in 'Lys-63'-linked polyubiquitinated proteins; accumulation of ubiquitinated proteins including RRM2 and TARDBP/TDP43; impaired autophagosome-lysosome fusion; impaired degradation by the ubiquitin proteasome system (UPS); increased levels of ubiquitinated autophagy receptor SQSTM1/p62 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
rs771621178 CA7842754 VAR_085185 RCV001281088 |
624 | E>K | Frontotemporal dementia and/or amyotrophic lateral sclerosis 5 FTDALS5; impaired degradation by the ubiquitin proteasome system (UPS) [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP |
|
CA7842870 VAR_085186 rs762663630 |
772 | I>T | FTDALS5; unknown pathological significance; impaired degradation by the ubiquitin proteasome system (UPS) [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
|
CA394337832 rs1171871439 |
2 | G>R | No |
ClinGen TOPMed |
|
|
CA394337837 rs1477727557 |
2 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394337834 rs1171871439 |
2 | G>W | No |
ClinGen TOPMed |
|
|
CA394337842 rs1402682046 |
3 | S>I | No |
ClinGen gnomAD |
|
|
CA394337843 rs1472073974 |
3 | S>R | No |
ClinGen TOPMed |
|
|
rs999142628 CA276807494 |
4 | G>D | No |
ClinGen Ensembl |
|
|
rs903018087 CA276807493 |
4 | G>S | No |
ClinGen Ensembl |
|
|
CA394337851 rs1466345537 |
5 | G>C | No |
ClinGen gnomAD |
|
|
rs982770088 CA276807683 |
7 | V>D | No |
ClinGen TOPMed |
|
| TCGA novel | 7 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7841946 rs748315822 |
7 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7841947 rs769881023 |
8 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA394337950 rs1240089504 |
9 | C>R | No |
ClinGen gnomAD |
|
|
CA394337972 rs1458095752 |
10 | R>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 12 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7841948 rs773521452 |
13 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7841949 rs773521452 |
13 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394338164 rs1374600436 |
21 | R>* | No |
ClinGen gnomAD |
|
|
CA7841952 rs200973445 |
21 | R>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200973445 CA276807684 |
21 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 22 | R>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 22 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV001314863 rs2065260644 |
24 | R>K | No |
ClinVar dbSNP |
|
|
rs763656931 CA7841954 |
24 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA394338259 rs1222543489 |
25 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs753420694 CA7841955 |
27 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs371901886 CA7841956 |
28 | R>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7841957 rs371901886 |
28 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7841958 rs560665712 COSM969012 COSM969011 |
28 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs758116753 CA7841959 |
29 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA394338365 rs1180115137 |
32 | I>V | No |
ClinGen gnomAD |
|
|
rs751434920 CA7841961 |
34 | S>I | No |
ClinGen ExAC gnomAD |
|
|
rs748191075 CA7841964 |
38 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs769980414 CA7841965 |
38 | D>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 38 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394339092 rs1360745126 |
40 | L>I | No |
ClinGen gnomAD |
|
|
CA7841967 rs749536864 |
43 | I>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 45 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394339263 rs1296250059 |
47 | L>F | No |
ClinGen TOPMed |
|
|
rs771132756 CA7841968 |
48 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs200223187 CA276807688 |
49 | V>A | No |
ClinGen Ensembl |
|
|
rs760072087 CA7841970 |
50 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA394339404 rs1406438382 |
53 | L>P | No |
ClinGen TOPMed |
|
|
CA7841971 rs192845060 |
55 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1273802229 CA394339456 |
56 | R>Q | No |
ClinGen gnomAD |
|
|
rs772632798 CA7841989 |
59 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1240584907 CA394339761 |
59 | H>R | No |
ClinGen TOPMed |
|
|
rs1375777862 CA394339778 |
60 | S>Y | No |
ClinGen TOPMed |
|
|
rs776129398 CA7841990 |
61 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1030528649 CA276807904 |
64 | D>E | No |
ClinGen TOPMed |
|
|
rs1359003015 CA394339940 |
67 | D>H | No |
ClinGen gnomAD |
|
|
CA394339966 rs1596914185 |
68 | N>D | No |
ClinGen Ensembl |
|
|
CA394339975 rs1397320224 |
68 | N>K | No |
ClinGen TOPMed |
|
|
CA7841991 rs369245530 |
69 | H>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394340003 rs140248806 |
69 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369245530 CA394339990 |
69 | H>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394340028 rs1434594994 |
70 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394340021 rs1434594994 |
70 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA394340072 rs1371900565 |
72 | V>A | No |
ClinGen gnomAD |
|
|
rs4589553 CA7841993 |
74 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762467934 CA7841994 |
75 | C>R | No |
ClinGen ExAC gnomAD |
|
|
CA276807905 rs986789044 |
79 | Q>R | No |
ClinGen TOPMed |
|
|
CA7841995 rs765980912 |
80 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1288895759 CA394340315 |
83 | P>L | No |
ClinGen gnomAD |
|
|
rs1378748901 CA394340343 |
85 | P>A | No |
ClinGen TOPMed |
|
|
rs143974143 RCV000983465 CA7841998 |
86 | G>E | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA7841999 rs752507974 |
87 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842000 rs756107653 |
88 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276807906 rs796595384 |
92 | E>A | No |
ClinGen TOPMed |
|
|
CA394340473 rs796595384 |
92 | E>G | No |
ClinGen TOPMed |
|
|
rs200485108 CA276807907 |
93 | R>G | No |
ClinGen 1000Genomes |
|
|
CA7842015 rs773933025 |
94 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1411990421 CA394342082 |
95 | A>S | No |
ClinGen TOPMed |
|
|
CA7842016 rs759191535 |
96 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA7842017 rs767259178 |
101 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760436368 CA394342195 |
103 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA7842019 rs760436368 |
103 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA7842020 rs764061587 |
103 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs753785529 CA7842021 |
104 | V>E | No |
ClinGen ExAC gnomAD |
|
|
CA276808280 rs990719669 |
106 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs931365281 CA276808281 |
107 | G>C | No |
ClinGen Ensembl |
|
|
CA394342261 rs1310117441 |
108 | I>V | No |
ClinGen gnomAD |
|
|
rs1293687317 CA394342284 |
109 | A>V | No |
ClinGen gnomAD |
|
|
rs200331327 CA276808282 |
110 | Y>C | No |
ClinGen TOPMed |
|
|
rs887256259 CA276808283 |
111 | L>V | No |
ClinGen gnomAD |
|
|
CA7842024 rs144671828 |
113 | N>S | No |
ClinGen ESP ExAC gnomAD |
|
| TCGA novel | 117 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs779751767 CA7842053 |
118 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs1214815214 CA394342439 |
118 | V>L | No |
ClinGen gnomAD |
|
|
rs1214815214 CA394342437 |
118 | V>M | No |
ClinGen gnomAD |
|
|
CA7842054 rs746644206 |
119 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs768438236 CA7842055 |
122 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA7842056 rs552825346 |
123 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs371699142 CA7842057 |
123 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842059 rs773326682 COSM255915 |
124 | A>T | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA394342476 rs1567383900 |
124 | A>V | No |
ClinGen Ensembl |
|
|
rs376056912 CA276808457 |
125 | E>K | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7842060 rs376056912 |
125 | E>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA394342480 rs1160948294 |
125 | E>V | No |
ClinGen gnomAD |
|
|
rs767884579 CA7842064 |
130 | K>M | No |
ClinGen ExAC gnomAD |
|
|
rs767884579 CA394342512 |
130 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs951449600 CA394342515 |
131 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs951449600 CA276808458 |
131 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1440949823 CA394342523 |
132 | S>C | No |
ClinGen gnomAD |
|
|
rs138913390 CA7842065 |
133 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA7842066 rs756519948 |
133 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1238678447 CA394342535 |
134 | F>C | No |
ClinGen gnomAD |
|
|
CA7842067 rs778239846 |
135 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA394342546 rs1317944579 |
136 | S>G | No |
ClinGen gnomAD |
|
|
rs1244309698 CA394342553 |
137 | L>V | No |
ClinGen gnomAD |
|
|
CA7842069 rs757857382 |
138 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 139 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842072 rs371783851 |
140 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs141610633 CA7842071 |
140 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs781029092 CA7842073 |
142 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs202050678 CA7842074 |
143 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1162467280 CA394342600 |
145 | A>P | No |
ClinGen gnomAD |
|
|
rs749253539 CA7842077 |
146 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842078 rs770996337 |
146 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1228147561 CA394342624 |
149 | I>L | No |
ClinGen TOPMed |
|
|
rs1456964858 CA394342635 |
150 | W>* | No |
ClinGen gnomAD |
|
| TCGA novel | 150 | W>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1268775342 CA394342657 |
153 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs761023491 CA7842083 |
153 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764445847 CA7842084 |
154 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1337151782 CA394342660 |
154 | R>H | No |
ClinGen gnomAD |
|
|
CA276808459 rs748943310 |
156 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1567383988 CA394342698 |
160 | S>N | No |
ClinGen Ensembl |
|
|
CA7842087 rs148159882 |
161 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394342736 rs1423512465 |
165 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1034536725 CA276808460 |
166 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs780974312 CA7842090 |
167 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1391456018 CA394342750 |
168 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA7842092 rs557533283 |
169 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276808461 rs984381828 |
170 | E>G | No |
ClinGen gnomAD |
|
|
CA394342763 rs1420811384 |
170 | E>K | No |
ClinGen gnomAD |
|
|
CA7842093 rs777735624 |
171 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs576017988 CA7842095 |
173 | R>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs908880888 CA276808462 |
175 | E>A | No |
ClinGen gnomAD |
|
|
CA7842096 rs774397102 |
175 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1194987139 CA394343565 |
181 | T>A | No |
ClinGen gnomAD |
|
|
CA7842115 rs772080724 |
182 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842117 rs778360498 |
183 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842116 rs778360498 |
183 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 184 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1383337965 CA394343637 |
185 | S>A | No |
ClinGen gnomAD |
|
|
rs1402632112 CA394343650 |
185 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs768832394 CA7842118 |
186 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs776957393 CA7842119 |
188 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394343821 rs1328014197 |
191 | G>D | No |
ClinGen gnomAD |
|
|
rs1428319625 CA394343828 |
192 | R>K | No |
ClinGen TOPMed |
|
|
CA7842120 CA394343927 rs762067213 |
197 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC TOPMed gnomAD NCI-TCGA |
| TCGA novel | 198 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394344157 rs1248989504 |
199 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1182915298 CA394344225 |
203 | Q>L | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 204 | Q>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781263300 CA7842138 |
206 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1167423638 CA394344278 |
206 | A>T | No |
ClinGen gnomAD |
|
|
rs1596918807 CA394344300 |
207 | H>R | No |
ClinGen Ensembl |
|
|
rs1244558210 CA394344312 |
208 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA7842140 rs770009969 |
210 | F>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1210921055 CA394344357 |
210 | F>L | No |
ClinGen TOPMed |
|
|
rs1292698756 CA394344355 |
210 | F>Y | No |
ClinGen TOPMed |
|
|
rs918239940 CA276808683 |
211 | E>Q | No |
ClinGen TOPMed |
|
|
rs1398470046 CA394344398 |
213 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA7842141 rs375714600 |
215 | H>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1410519976 CA394344426 |
215 | H>N | No |
ClinGen TOPMed gnomAD |
|
|
CA7842142 rs763454851 |
216 | Q>E | No |
ClinGen ExAC |
|
|
rs1353370290 CA394344451 |
216 | Q>R | No |
ClinGen gnomAD |
|
|
rs771544471 CA7842143 |
219 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775057877 CA7842144 |
222 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA394345117 rs1224532153 |
224 | L>F | No |
ClinGen gnomAD |
|
|
CA394345139 rs1342073344 |
225 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA7842146 rs763665994 |
226 | W>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 228 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1376885 rs753372697 CA7842147 COSM1376886 |
229 | D>N | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7842148 rs761549429 |
229 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA394345274 rs753372697 |
229 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1428153873 CA394345348 |
231 | R>G | No |
ClinGen gnomAD |
|
|
rs764898739 CA7842149 |
231 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA394345402 rs1374924533 |
232 | T>R | No |
ClinGen gnomAD |
|
|
CA7842150 rs140493876 |
233 | D>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140493876 CA7842151 |
233 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7842179 rs757639588 |
234 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs549764947 CA7842180 |
236 | D>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA394345679 rs1417035088 |
238 | G>R | No |
ClinGen gnomAD |
|
|
rs746336128 CA7842181 |
239 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA7842182 rs147234069 |
239 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842185 rs747677407 |
242 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1443719473 CA394345873 |
243 | S>T | No |
ClinGen gnomAD |
|
|
rs1294576891 CA394345915 |
244 | F>C | No |
ClinGen gnomAD |
|
|
rs1373287282 CA394345928 |
244 | F>L | No |
ClinGen gnomAD |
|
|
CA276808709 rs929933986 |
245 | R>* | No |
ClinGen TOPMed |
|
|
CA7842186 rs769252336 |
245 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 248 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1309624568 CA394346056 |
249 | D>H | No |
ClinGen gnomAD |
|
|
rs1232979399 CA394346106 |
251 | A>T | No |
ClinGen gnomAD |
|
|
CA394346174 rs1337109084 |
254 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs762603366 CA7842188 |
255 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA394346266 rs1250653160 |
258 | A>S | No |
ClinGen gnomAD |
|
|
rs766126024 CA7842189 |
258 | A>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 259 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1596922802 CA394348124 |
265 | A>D | No |
ClinGen Ensembl |
|
|
rs1434448615 CA394348114 |
265 | A>T | No |
ClinGen gnomAD |
|
|
rs192314535 CA276810733 |
266 | C>Y | No |
ClinGen 1000Genomes gnomAD |
|
|
CA394348202 rs1377442054 |
267 | A>T | No |
ClinGen gnomAD |
|
|
CA394348267 rs1178331011 |
269 | A>T | No |
ClinGen gnomAD |
|
|
CA7842216 rs764227871 |
270 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1382393764 CA394348305 |
270 | N>S | No |
ClinGen TOPMed |
|
| TCGA novel | 270 | N>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842217 rs753937291 |
271 | Q>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1360015444 CA394348364 |
272 | L>P | No |
ClinGen gnomAD |
|
|
rs1236376660 CA394348432 |
275 | E>D | No |
ClinGen TOPMed |
|
|
rs1439173034 CA394348417 |
275 | E>G | No |
ClinGen TOPMed |
|
|
rs1406022779 CA394348448 |
276 | V>L | No |
ClinGen gnomAD |
|
|
CA394348453 rs1596922834 |
277 | R>G | No |
ClinGen Ensembl |
|
|
rs765542237 CA7842219 |
277 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1484174471 CA394348476 |
278 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA7842220 rs368071746 |
279 | S>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs758720929 CA7842221 |
280 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA7842224 rs201813739 COSM94030 |
282 | I>M | breast [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs139143672 CA7842222 |
282 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7842225 rs781701989 |
283 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1186628996 CA394348665 |
284 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1013622104 CA276810742 |
287 | F>L | No |
ClinGen TOPMed |
|
|
CA7842226 rs143155692 |
288 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 290 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842227 rs770498667 |
290 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs778470923 CA7842228 |
292 | A>P | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 293 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771852887 CA7842231 |
297 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA394349193 rs1343681065 |
300 | S>T | No |
ClinGen gnomAD |
|
|
rs760556321 CA7842233 |
301 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394349260 rs1401935279 |
302 | Q>R | No |
ClinGen gnomAD |
|
|
CA7842234 rs548120156 |
304 | G>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs927731140 CA276810750 |
305 | L>F | No |
ClinGen TOPMed |
|
|
CA7842235 rs776766249 |
305 | L>P | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 306 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs373734213 CA7842236 |
306 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs773421567 CA7842238 |
307 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs369725393 CA7842237 |
307 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
rs1166969662 CA394349410 |
308 | T>P | No |
ClinGen TOPMed |
|
|
rs1208746573 CA394349481 |
309 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA394349461 rs1281648913 |
309 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
rs763103851 CA7842239 |
309 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394349466 rs1281648913 |
309 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
rs761074909 CA7842282 |
311 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA394349929 rs1443237838 |
314 | I>L | No |
ClinGen TOPMed |
|
|
CA394349946 rs551656222 |
314 | I>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA394349927 rs1443237838 |
314 | I>V | No |
ClinGen TOPMed |
|
|
rs754435611 CA7842284 |
315 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276811272 rs532898317 |
315 | D>N | No |
ClinGen Ensembl |
|
| TCGA novel | 316 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs201540325 CA7842288 |
318 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs751203430 CA7842287 |
318 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842289 rs781029145 |
319 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs752529980 CA7842290 |
320 | V>F | No |
ClinGen ExAC |
|
|
rs756007066 CA7842291 |
320 | V>G | No |
ClinGen ExAC |
|
|
rs1388901994 CA394350167 |
321 | A>V | No |
ClinGen TOPMed |
|
|
rs1596924274 CA394350171 |
322 | T>P | No |
ClinGen Ensembl |
|
|
CA7842293 rs749265969 |
323 | M>R | No |
ClinGen ExAC |
|
|
rs770868945 CA7842294 |
325 | D>A | No |
ClinGen ExAC |
|
|
rs745989180 CA7842296 |
326 | F>I | No |
ClinGen ExAC gnomAD |
|
|
rs775745699 CA7842298 |
326 | F>L | No |
ClinGen ExAC |
|
|
rs772260732 CA7842297 |
326 | F>S | No |
ClinGen ExAC gnomAD |
|
|
rs201977657 CA7842299 |
327 | T>K | No |
ClinGen ExAC gnomAD |
|
|
rs1468552314 CA394350299 |
329 | L>R | No |
ClinGen TOPMed |
|
|
rs1251924142 CA394350309 |
330 | C>S | No |
ClinGen TOPMed |
|
|
CA394350340 rs1596924334 |
332 | H>P | No |
ClinGen Ensembl |
|
|
rs1226478564 CA394350359 |
334 | T>P | No |
ClinGen TOPMed |
|
|
CA394350383 rs1270991730 |
335 | V>A | No |
ClinGen gnomAD |
|
|
CA7842305 rs759163200 |
335 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA7842309 rs777646899 |
336 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA7842307 rs547393350 |
336 | E>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7842308 rs547393350 |
336 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7842311 rs757188816 |
340 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842310 rs139587469 |
340 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs35214798 CA7842312 |
341 | Y>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM969094 COSM969093 rs772205153 CA7842315 |
343 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs745932967 CA7842314 |
343 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842316 rs371050277 |
344 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs777081653 CA7842319 |
345 | R>S | No |
ClinGen ExAC gnomAD |
|
|
rs768849807 CA7842318 |
345 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA7842317 rs747267245 |
345 | R>W | No |
ClinGen ExAC |
|
|
CA7842320 rs748498211 |
346 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA7842321 rs770399989 |
348 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842323 rs759052794 |
349 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394351002 rs1346108020 |
349 | R>W | No |
ClinGen gnomAD |
|
|
rs1596924480 CA394351034 |
350 | Y>D | No |
ClinGen Ensembl |
|
| TCGA novel | 350 | Y>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842325 rs199750563 |
351 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs760406917 CA7842326 |
352 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA7842329 rs757060245 |
358 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394351227 rs1567387691 |
359 | C>Y | No |
ClinGen Ensembl |
|
|
rs765152283 CA7842330 |
360 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs750364006 CA7842331 |
365 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
COSM969097 CA394351359 rs1362800279 COSM969096 |
365 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs774245832 CA276812332 |
367 | I>V | No |
ClinGen gnomAD |
|
|
rs756501762 CA7842356 |
369 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA7842359 rs530420264 |
373 | T>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs913172403 CA276812340 |
374 | I>V | No |
ClinGen Ensembl |
|
|
rs949983473 CA276812344 |
375 | R>Q | No |
ClinGen gnomAD |
|
|
CA7842360 rs779348473 |
375 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs746526519 CA7842361 |
376 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs776287774 CA7842364 |
378 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA7842366 rs769537532 |
381 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1029984074 CA276812358 |
385 | Y>* | No |
ClinGen TOPMed |
|
|
CA394353196 rs1339985977 |
388 | E>K | No |
ClinGen gnomAD |
|
|
CA394353312 rs954539468 |
392 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
CA394353342 rs1275167646 |
393 | M>T | No |
ClinGen gnomAD |
|
|
rs766324204 CA7842369 |
394 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs1446387136 CA394353370 |
394 | M>T | No |
ClinGen TOPMed |
|
|
rs766324204 CA7842370 |
394 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs36008785 CA7842372 RCV000955502 |
396 | E>D | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1014628275 CA276812378 |
398 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs754242856 CA7842376 |
400 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs963147426 CA276812386 |
404 | K>R | No |
ClinGen TOPMed |
|
| TCGA novel | 405 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1377404629 CA394353723 |
405 | I>M | No |
ClinGen TOPMed |
|
|
rs867216244 CA276812388 |
405 | I>V | No |
ClinGen gnomAD |
|
|
CA394353728 rs1434320762 |
406 | R>* | No |
ClinGen gnomAD |
|
|
rs146438723 CA7842378 RCV000911413 |
406 | R>Q | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA394353972 rs1430754659 |
407 | V>G | No |
ClinGen TOPMed |
|
|
CA7842464 rs748129007 |
407 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA7842465 rs769712586 |
409 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1518626 COSM1518627 rs777880085 CA7842466 |
410 | V>M | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA394354028 rs1487009010 |
411 | V>M | No |
ClinGen TOPMed |
|
|
rs1222720872 CA394354068 |
412 | D>E | No |
ClinGen TOPMed |
|
| TCGA novel | 413 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1355233826 CA394354102 |
414 | K>E | No |
ClinGen TOPMed |
|
|
CA7842468 rs771130093 |
415 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs759832040 CA7842470 |
416 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA7842469 rs774622969 |
416 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1282150875 CA394354185 |
419 | T>A | No |
ClinGen TOPMed |
|
|
rs772442115 CA7842471 |
419 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772442115 CA394354190 |
419 | T>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764545606 CA7842474 |
421 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs772753529 CA7842475 |
422 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1206908477 CA394354236 |
422 | P>S | No |
ClinGen gnomAD |
|
|
CA394354266 rs1398129004 |
424 | E>K | No |
ClinGen TOPMed |
|
|
CA276812600 rs890066819 |
427 | T>I | No |
ClinGen gnomAD |
|
| TCGA novel | 428 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394354372 rs151164394 |
429 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842478 rs751260563 |
431 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs754760067 CA7842479 |
432 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754760067 CA7842480 |
432 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276812604 rs544550720 |
434 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA7842482 rs756058100 |
436 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394354527 rs1454827264 |
437 | L>I | No |
ClinGen gnomAD |
|
| TCGA novel | 438 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842486 rs749366538 |
441 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842485 rs749366538 |
441 | H>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1388917607 CA394354614 |
441 | H>Q | No |
ClinGen gnomAD |
|
|
rs779053179 CA7842488 |
442 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779053179 CA7842487 |
442 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772287531 CA394354636 |
443 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772287531 CA7842489 |
443 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772287531 CA276812620 |
443 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842490 rs377121613 |
445 | S>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs140563930 CA7842492 |
446 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1197241031 CA394354683 |
447 | Y>D | No |
ClinGen TOPMed |
|
|
CA394354699 rs762484860 |
448 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842494 rs762484860 |
448 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394354721 rs1285208612 |
449 | P>L | No |
ClinGen TOPMed |
|
|
CA7842496 rs774096632 |
450 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA394354724 rs774096632 |
450 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs150447372 CA7842497 |
451 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394354736 rs150447372 |
451 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7842498 rs767126159 |
451 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842499 rs752524830 |
452 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1412126243 CA394354752 |
453 | A>T | No |
ClinGen gnomAD |
|
|
rs1422746399 CA394354764 |
453 | A>V | No |
ClinGen gnomAD |
|
|
CA276812636 rs1019993335 |
454 | A>T | No |
ClinGen Ensembl |
|
|
rs753790591 CA7842502 |
455 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs757281805 CA7842503 |
455 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1370180810 CA394354817 |
458 | L>F | No |
ClinGen gnomAD |
|
|
rs778998058 CA394354836 |
459 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201788118 CA7842506 |
460 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1338170367 CA394354883 |
461 | R>K | No |
ClinGen gnomAD |
|
|
rs1338170367 CA394354887 |
461 | R>T | No |
ClinGen gnomAD |
|
|
CA7842508 rs537870896 |
463 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7842509 rs537870896 |
463 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7842512 rs147242999 |
464 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7842513 rs201271212 |
465 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842514 rs201271212 |
465 | G>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1206792100 CA394354992 |
466 | Q>* | No |
ClinGen gnomAD |
|
|
rs369144402 CA7842515 |
467 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842551 rs375523895 |
470 | W>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842552 rs771496661 |
471 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771496661 CA394355968 |
471 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771496661 CA276813870 |
471 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842553 rs775163061 |
477 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775163061 CA394356059 |
477 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842554 rs760280974 |
478 | T>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs549283849 CA7842557 |
479 | G>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs776384962 CA7842556 |
479 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842559 rs750328927 |
483 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA7842558 rs765151794 |
483 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842560 rs763031251 |
484 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1239041295 CA394356172 |
484 | D>N | No |
ClinGen TOPMed |
|
|
rs763031251 CA394356177 |
484 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs377612641 CA7842562 |
487 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842564 rs781622825 |
488 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs569537585 COSM3711904 CA7842566 COSM3711905 |
489 | V>I | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs974206606 CA394356292 |
492 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs974206606 CA276813902 |
492 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA7842570 rs749786542 |
495 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1596931216 CA394357030 |
497 | F>V | No |
ClinGen Ensembl |
|
|
rs1471808849 CA394357057 |
499 | D>A | No |
ClinGen gnomAD |
|
|
rs1471808849 CA394357059 |
499 | D>G | No |
ClinGen gnomAD |
|
|
CA394357078 rs1428900926 |
501 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA7842599 rs201290179 |
501 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs769952836 CA276815440 |
502 | P>L | No |
ClinGen Ensembl |
|
|
rs1410023483 CA394357099 |
503 | K>M | No |
ClinGen gnomAD |
|
|
rs1400429107 CA394357102 |
504 | D>N | No |
ClinGen Ensembl |
|
|
CA7842601 rs759632058 |
506 | R>M | No |
ClinGen ExAC gnomAD |
|
|
CA394357121 rs759632058 |
506 | R>T | No |
ClinGen ExAC gnomAD |
|
|
rs767728162 CA7842602 |
507 | Q>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 508 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7842603 rs775818588 |
508 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA394357149 rs1380375881 |
511 | T>N | No |
ClinGen TOPMed |
|
|
rs1596931268 CA394357146 |
511 | T>P | No |
ClinGen Ensembl |
|
|
CA7842608 rs757704196 |
512 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs757704196 CA7842607 |
512 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs369296450 CA7842611 |
513 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369296450 CA7842610 |
513 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842612 rs747695958 |
516 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA276815478 rs1015379178 |
518 | E>G | No |
ClinGen gnomAD |
|
|
CA394357201 rs1243711271 |
519 | D>E | No |
ClinGen gnomAD |
|
|
COSM1376893 COSM1376894 rs374120930 CA7842613 |
521 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs775623319 CA7842614 |
521 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1424139332 CA394357219 |
522 | Y>C | No |
ClinGen TOPMed |
|
|
CA394357216 rs1166506950 |
522 | Y>H | No |
ClinGen TOPMed |
|
|
CA7842615 rs748970301 |
523 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA7842616 rs770775588 |
524 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs778667431 CA7842617 |
528 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394357287 rs1468754991 |
530 | V>L | No |
ClinGen Ensembl |
|
|
rs372723774 COSM1189144 CA7842645 COSM1189143 |
531 | L>R | lung [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
rs369973675 CA7842647 |
532 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs766866763 CA7842648 |
533 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1324116569 CA394357315 |
534 | S>R | No |
ClinGen TOPMed |
|
|
rs752075387 CA7842649 |
535 | Q>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA7842650 rs760054447 |
535 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
CA394357319 rs760054447 |
535 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA394357345 rs1389778807 |
539 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA394357348 rs1308999043 |
539 | A>V | No |
ClinGen gnomAD |
|
|
rs1431350845 CA394357375 |
544 | Q>E | No |
ClinGen TOPMed |
|
|
rs1222692813 CA394357406 |
548 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1567390946 CA394357409 |
548 | D>V | No |
ClinGen Ensembl |
|
|
rs749266540 CA276815645 |
549 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749266540 CA7842658 |
549 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1178449850 CA394357417 |
550 | P>A | No |
ClinGen gnomAD |
|
|
CA7842660 rs754969037 |
550 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842662 rs748224007 |
551 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA7842663 rs534549622 |
551 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842664 rs566884441 |
552 | F>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7842665 rs749597738 |
552 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1268387434 CA394357426 |
552 | F>L | No |
ClinGen TOPMed |
|
|
CA276815665 rs566884441 |
552 | F>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs535449480 CA7842666 |
553 | L>P | No |
ClinGen 1000Genomes |
|
|
rs771307969 CA7842668 |
554 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394357443 rs1370211710 |
555 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1370211710 CA394357444 |
555 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394357451 rs774802568 |
556 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842669 rs774802568 |
556 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276815680 rs1005247693 |
558 | I>T | No |
ClinGen Ensembl |
|
|
CA276815685 rs555465125 |
559 | H>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs767962309 CA7842671 |
559 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764920424 CA7842674 |
560 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842673 rs761300716 |
560 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394357478 rs1176773420 |
561 | F>L | No |
ClinGen gnomAD |
|
|
rs370117441 CA276815689 |
563 | S>G | No |
ClinGen ESP TOPMed |
|
|
rs370117441 CA276815688 |
563 | S>R | No |
ClinGen ESP TOPMed |
|
|
CA394357497 rs1339689161 |
564 | S>T | No |
ClinGen gnomAD |
|
|
CA394357500 rs1206007767 |
564 | S>Y | No |
ClinGen gnomAD |
|
|
CA7842676 rs200908912 |
565 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142982582 COSM702893 COSM702894 CA7842677 |
566 | S>L | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs925919946 CA276815700 |
568 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs754920554 CA7842680 |
568 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA7842682 rs756190522 |
571 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1567391030 CA394357543 |
572 | R>Q | No |
ClinGen Ensembl |
|
|
CA7842683 rs199743115 |
572 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs60998614 CA276816900 |
574 | R>G | No |
ClinGen gnomAD |
|
|
CA394358392 rs369730776 |
574 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842720 rs369730776 |
574 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA276816899 rs60998614 |
574 | R>W | No |
ClinGen gnomAD |
|
| TCGA novel | 575 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753913259 CA7842721 |
576 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842722 rs757336351 |
577 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs779143179 CA7842723 |
578 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842724 rs750636970 |
578 | L>P | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 578 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA276816910 rs996015464 |
579 | Q>R | No |
ClinGen TOPMed |
|
|
CA394358502 rs1345521736 |
581 | D>G | No |
ClinGen gnomAD |
|
|
CA394358498 rs1304596173 |
581 | D>H | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 583 | G>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394358530 rs1408721347 |
583 | G>S | No |
ClinGen gnomAD |
|
|
COSM3387326 CA7842727 COSM3387327 rs553608689 |
586 | V>I | pancreas [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC gnomAD |
|
rs1596933470 CA394358621 |
588 | T>P | No |
ClinGen Ensembl |
|
|
CA276816922 rs1019368451 |
591 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7842730 rs748739816 |
591 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1490521064 CA394358726 |
592 | E>D | No |
ClinGen gnomAD |
|
|
rs148105729 CA7842732 |
592 | E>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA276816932 rs1025547205 |
595 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA394358879 rs1177557365 |
599 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs201114363 CA7842736 |
600 | L>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1428509764 CA394358908 |
602 | G>S | No |
ClinGen gnomAD |
|
|
rs1282355532 CA394358929 |
603 | S>N | No |
ClinGen Ensembl |
|
|
rs118131564 CA7842738 RCV000924026 |
604 | F>I | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs753790420 CA394358955 |
604 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs765259053 CA7842741 |
606 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394358976 rs765259053 |
606 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394358992 rs1421921758 |
607 | W>* | No |
ClinGen TOPMed |
|
|
rs750552435 CA7842742 |
607 | W>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758523853 CA7842743 |
608 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA394359065 rs1360489867 |
610 | D>H | No |
ClinGen gnomAD |
|
|
CA7842744 rs139303228 |
611 | C>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394359209 rs1596933613 |
617 | G>C | No |
ClinGen Ensembl |
|
|
rs146026073 CA7842746 |
618 | D>N | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1258235353 CA394359263 |
619 | Q>H | No |
ClinGen TOPMed |
|
|
rs748686645 CA7842749 |
620 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1264734848 CA394359313 |
622 | E>A | No |
ClinGen TOPMed |
|
|
rs1233772088 CA394359321 |
622 | E>D | No |
ClinGen TOPMed |
|
|
rs745443529 CA7842752 |
623 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs775130027 CA7842756 |
626 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842755 rs775130027 |
626 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs761621306 | 628 | D>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1398427113 CA394359425 |
628 | D>G | No |
ClinGen TOPMed |
|
|
rs139828844 CA7842758 |
628 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1321312830 CA394360097 |
629 | V>A | No |
ClinGen gnomAD |
|
|
rs541386499 CA7842760 |
629 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7842780 rs543813373 |
631 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 632 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 632 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394360137 rs200209194 |
633 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs563777257 CA7842782 |
634 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs753000700 COSM969122 CA7842785 COSM969123 |
637 | D>N | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7842786 rs761107954 |
638 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs373872375 CA7842788 |
640 | V>M | Variant assessed as Somatic; 5.229e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs757868114 CA7842789 |
641 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757868114 CA394360216 |
641 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394360245 rs1157232478 |
643 | L>R | No |
ClinGen gnomAD |
|
|
rs1387406238 CA394360273 |
646 | E>Q | No |
ClinGen gnomAD |
|
|
CA394360287 rs1420600435 |
647 | Q>E | No |
ClinGen gnomAD |
|
|
CA276817539 rs987946710 |
651 | Q>* | No |
ClinGen Ensembl |
|
|
CA394360347 rs1406872061 |
652 | E>K | No |
ClinGen gnomAD |
|
|
rs754607732 CA7842792 |
653 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA7842793 rs201038398 |
653 | S>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201038398 CA394360366 |
653 | S>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs747829079 CA7842794 |
654 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842796 rs769642353 |
656 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs777521800 CA7842797 |
657 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA394360419 rs1289185780 |
658 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
CA394360417 rs1289185780 |
658 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA276817566 rs917649128 |
658 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1199575804 CA394360446 |
660 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA394360447 rs1360597422 |
661 | E>K | No |
ClinGen TOPMed |
|
|
rs200166258 CA7842798 |
662 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA7842799 rs771041686 |
663 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs145521789 CA7842801 |
669 | Q>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394360527 rs145521789 |
669 | Q>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394360539 rs1358532037 |
670 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs775797148 CA7842803 |
671 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs772355945 CA7842802 |
671 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1474762658 CA394360543 |
672 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs369116649 CA7842804 |
672 | A>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1218690985 CA394360550 |
673 | L>Q | No |
ClinGen TOPMed |
|
|
CA7842805 rs764553387 |
674 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA394360563 rs1389545763 |
675 | T>I | No |
ClinGen gnomAD |
|
|
CA7842806 rs754199256 |
675 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA7842807 rs762281333 |
676 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs751060943 CA7842809 |
677 | I>S | No |
ClinGen ExAC gnomAD |
|
|
COSM1247620 CA7842808 COSM1247619 rs765788059 |
677 | I>V | oesophagus [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA394360592 rs780649554 |
680 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA7842811 rs780649554 |
680 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs565131831 CA7842810 |
680 | T>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7842812 rs752414566 |
681 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1194513040 CA394360608 |
683 | P>L | No |
ClinGen gnomAD |
|
|
CA7842813 rs755825085 |
683 | P>S | No |
ClinGen ExAC |
|
|
CA394360615 CA394360616 rs1458480460 |
684 | K>N | No |
ClinGen gnomAD |
|
|
CA394360612 rs1253320133 |
684 | K>T | No |
ClinGen gnomAD |
|
|
rs1049059328 CA276817604 |
685 | P>L | No |
ClinGen Ensembl |
|
|
CA276817601 rs914577780 |
685 | P>S | No |
ClinGen TOPMed |
|
|
CA7842815 rs527471283 |
688 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs770988688 CA7842816 |
688 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA394360636 rs1165767694 |
689 | T>P | No |
ClinGen gnomAD |
|
|
CA276817618 rs148419125 |
691 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1580668 rs148419125 CA7842819 RCV000895884 COSM1580667 |
691 | R>Q | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs745887382 CA7842818 |
691 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1451605526 CA394360660 |
693 | P>T | No |
ClinGen gnomAD |
|
|
rs1334520310 CA394360678 |
695 | K>N | No |
ClinGen gnomAD |
|
|
CA7842821 rs747219952 |
697 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201460257 CA7842823 |
698 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA394360713 rs1253567667 |
699 | T>S | No |
ClinGen gnomAD |
|
|
CA394360733 rs1398482659 |
701 | G>R | No |
ClinGen TOPMed |
|
|
rs758999973 CA7842827 |
702 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA394360774 rs1182628199 |
704 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
COSM212238 CA7842829 COSM1200157 rs142923904 |
705 | V>I | Variant assessed as Somatic; 0.0 impact. large_intestine breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1195633095 CA394360787 |
706 | S>G | No |
ClinGen TOPMed |
|
|
CA394360790 rs1183865923 |
706 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs754766175 CA394360809 |
708 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754766175 CA7842831 COSM335420 COSM335419 |
708 | A>T | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA394360822 rs1174197162 |
709 | S>N | No |
ClinGen gnomAD |
|
|
CA276817675 rs1050561691 |
710 | P>H | No |
ClinGen gnomAD |
|
|
CA394360834 rs1050561691 |
710 | P>L | No |
ClinGen gnomAD |
|
|
rs147731099 CA394360846 |
711 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA394360844 rs147731099 |
711 | T>K | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7842833 rs147731099 |
711 | T>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA394360850 rs1359486291 |
712 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1359486291 CA394360849 |
712 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
CA276817677 rs555892403 |
714 | V>G | No |
ClinGen Ensembl |
|
|
RCV000954493 CA7842835 rs61755288 |
714 | V>M | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA394360879 rs1223360562 |
715 | D>N | No |
ClinGen gnomAD |
|
|
CA394360898 rs1211325681 |
716 | G>A | No |
ClinGen gnomAD |
|
|
rs1314261447 CA394360891 |
716 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs762016200 CA394360905 |
717 | G>D | No |
ClinGen Ensembl |
|
|
rs762016200 CA276817687 |
717 | G>V | No |
ClinGen Ensembl |
|
|
rs747120382 CA7842838 |
718 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs768922579 CA7842839 |
719 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1263920225 CA394360932 |
720 | A>G | No |
ClinGen gnomAD |
|
|
CA276817691 rs1032591534 |
720 | A>P | No |
ClinGen Ensembl |
|
|
CA394360936 rs1596934728 |
721 | L>P | No |
ClinGen Ensembl |
|
|
rs1332310171 CA394360946 |
722 | P>L | No |
ClinGen TOPMed |
|
|
CA394360955 rs1596934736 |
723 | Q>P | No |
ClinGen Ensembl |
|
|
CA394360966 rs1596934743 |
724 | P>S | No |
ClinGen Ensembl |
|
|
rs1439671328 CA394360979 |
725 | T>I | No |
ClinGen TOPMed |
|
|
rs1400695946 CA394360972 |
725 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs770169292 CA7842843 |
726 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs112769291 CA7842841 |
726 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs770169292 CA7842842 |
726 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276817696 rs112769291 |
726 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1454974157 CA394360994 |
727 | V>A | No |
ClinGen gnomAD |
|
|
CA394360989 rs1319123874 |
727 | V>L | No |
ClinGen gnomAD |
|
|
CA7842847 rs760107270 |
731 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7842848 rs763743574 |
732 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA276817706 rs1009633042 |
732 | S>N | No |
ClinGen gnomAD |
|
|
CA394361044 rs1009633042 |
732 | S>T | No |
ClinGen gnomAD |
|
|
rs1567392650 CA394361058 |
733 | D>E | No |
ClinGen Ensembl |
|
|
CA7842849 rs753565485 |
733 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA7842850 rs377102842 |
734 | S>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 737 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV000917001 CA7842852 rs200540209 |
737 | Q>L | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs758338026 CA7842853 |
738 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394361134 rs1281088340 |
740 | H>L | No |
ClinGen TOPMed gnomAD |
|
|
CA276817735 rs924477796 |
741 | H>R | No |
ClinGen TOPMed |
|
|
rs1490192102 CA394361158 |
742 | Q>* | No |
ClinGen gnomAD |
|
|
CA7842854 rs779926230 |
743 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA394361213 rs1478350196 |
747 | C>G | No |
ClinGen gnomAD |
|
|
rs755029983 CA7842856 |
749 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs142532028 CA7842857 |
751 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140456910 CA7842858 |
751 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 753 | P>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs150393278 CA394361270 |
753 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs150393278 CA7842859 |
753 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394361276 rs1422184708 |
754 | S>N | No |
ClinGen gnomAD |
|
|
CA276817762 rs199502728 |
755 | P>T | No |
ClinGen gnomAD |
|
|
rs370448527 CA7842861 |
756 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA276817764 rs868599078 |
756 | P>S | No |
ClinGen Ensembl |
|
|
CA394361288 rs1596934882 |
757 | E>K | No |
ClinGen Ensembl |
|
|
CA394361315 rs1447138083 |
760 | V>D | No |
ClinGen TOPMed |
|
|
CA7842864 rs760181877 |
761 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774732292 CA7842863 |
761 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs572221317 CA276817779 |
762 | Q>R | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1310230621 CA394361339 |
764 | Q>* | No |
ClinGen gnomAD |
|
|
rs1310230621 CA394361338 |
764 | Q>E | No |
ClinGen gnomAD |
|
|
rs908460285 CA276817783 |
765 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs768080881 CA7842865 |
766 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA7842867 rs374118703 |
767 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7842866 rs540799362 |
767 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA394361431 rs766285320 |
773 | H>P | No |
ClinGen ExAC gnomAD |
|
|
CA7842871 rs766285320 |
773 | H>R | No |
ClinGen ExAC gnomAD |
|
|
rs1384215507 CA394361439 |
774 | S>G | No |
ClinGen gnomAD |
|
|
CA394361445 rs1453876650 |
774 | S>T | No |
ClinGen TOPMed |
|
|
rs138224180 CA7842873 |
775 | E>K | No |
ClinGen ESP ExAC TOPMed |
|
|
rs755047457 CA7842874 |
776 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA7842875 rs755047457 |
776 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1232637001 CA394361484 |
777 | E>G | No |
ClinGen TOPMed |
|
|
CA394361495 rs1449420429 |
778 | D>N | No |
ClinGen gnomAD |
|
|
rs1332535145 CA394361504 |
779 | M>L | No |
ClinGen gnomAD |
|
|
rs752823768 CA7842878 |
779 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1332535145 CA394361506 |
779 | M>V | No |
ClinGen gnomAD |
|
|
CA7842880 rs777975543 |
782 | G>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 783 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749608336 CA7842881 |
785 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs149600932 CA7842882 |
785 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1199022074 CA394361577 |
786 | L>Q | No |
ClinGen gnomAD |
1 associated diseases with P41002
[MIM: 619141]: Frontotemporal dementia and/or amyotrophic lateral sclerosis 5 (FTDALS5)
A neurodegenerative disorder characterized by frontotemporal dementia and/or amyotrophic lateral sclerosis in affected individuals. There is high intrafamilial variation. Frontotemporal dementia is characterized by frontal and temporal lobe atrophy associated with neuronal loss, gliosis, and dementia. Patients exhibit progressive changes in social, behavioral, and/or language function. Amyotrophic lateral sclerosis is characterized by the death of motor neurons in the brain, brainstem, and spinal cord, resulting in fatal paralysis. FTDALS5 is an autosomal dominant form with age-dependent penetrance. Penetrance is estimated to be 50% by age 56 and 100% by age 61. {ECO:0000269|PubMed:27080313, ECO:0000269|PubMed:28852778}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A neurodegenerative disorder characterized by frontotemporal dementia and/or amyotrophic lateral sclerosis in affected individuals. There is high intrafamilial variation. Frontotemporal dementia is characterized by frontal and temporal lobe atrophy associated with neuronal loss, gliosis, and dementia. Patients exhibit progressive changes in social, behavioral, and/or language function. Amyotrophic lateral sclerosis is characterized by the death of motor neurons in the brain, brainstem, and spinal cord, resulting in fatal paralysis. FTDALS5 is an autosomal dominant form with age-dependent penetrance. Penetrance is estimated to be 50% by age 56 and 100% by age 61. {ECO:0000269|PubMed:27080313, ECO:0000269|PubMed:28852778}. Note=The disease is caused by variants affecting the gene represented in this entry.
5 regional properties for P41002
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | F-box domain | 29 - 76 | IPR001810 |
| domain | Cyclin, C-terminal domain | 408 - 531 | IPR004367 |
| domain | Cyclin, N-terminal | 289 - 405 | IPR006671 |
| domain | Cyclin-like domain | 315 - 399 | IPR013763-1 |
| domain | Cyclin-like domain | 416 - 494 | IPR013763-2 |
Functions
9 GO annotations of cellular component
| Name | Definition |
|---|---|
| cell junction | A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella. |
| centriole | A cellular organelle, found close to the nucleus in many eukaryotic cells, consisting of a small cylinder with microtubular walls, 300-500 nm long and 150-250 nm in diameter. It contains nine short, parallel, peripheral microtubular fibrils, each fibril consisting of one complete microtubule fused to two incomplete microtubules. Cells usually have two centrioles, lying at right angles to each other. At division, each pair of centrioles generates another pair and the twin pairs form the pole of the mitotic spindle. |
| centrosome | A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle. |
| cyclin-dependent protein kinase holoenzyme complex | Cyclin-dependent protein kinases (CDKs) are enzyme complexes that contain a kinase catalytic subunit associated with a regulatory cyclin partner. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| perinuclear region of cytoplasm | Cytoplasm situated near, or occurring around, the nucleus. |
| SCF ubiquitin ligase complex | A ubiquitin ligase complex in which a cullin from the Cul1 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by a Skp1 adaptor and an F-box protein. SCF complexes are involved in targeting proteins for degradation by the proteasome. The best characterized complexes are those from yeast and mammals (with core subunits named Cdc53/Cul1, Rbx1/Hrt1/Roc1). |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| anaphase-promoting complex binding | Binding to an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. |
| cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. |
9 GO annotations of biological process
| Name | Definition |
|---|---|
| cell division | The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. |
| mitotic cell cycle phase transition | The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase. |
| negative regulation of centrosome duplication | Any process that decreases the frequency, rate or extent of centrosome duplication. Centrosome duplication is the replication of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. |
| placenta development | The process whose specific outcome is the progression of the placenta over time, from its formation to the mature structure. The placenta is an organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin. |
| protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
| re-entry into mitotic cell cycle | The resumption of the mitotic cell division cycle by cells that were in a quiescent or other non-dividing state. |
| regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
| regulation of cyclin-dependent protein serine/threonine kinase activity | Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. |
15 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P20438 | CLN2 | G1/S-specific cyclin CLN2 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P24869 | CLB2 | G2/mitotic-specific cyclin-2 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| O95067 | CCNB2 | G2/mitotic-specific cyclin-B2 | Homo sapiens (Human) | PR |
| P24864 | CCNE1 | G1/S-specific cyclin-E1 | Homo sapiens (Human) | PR |
| P30279 | CCND2 | G1/S-specific cyclin-D2 | Homo sapiens (Human) | PR |
| Q6ZMN8 | CCNI2 | Cyclin-I2 | Homo sapiens (Human) | PR |
| Q8K4F8 | Ccnf | Cyclin-F | Rattus norvegicus (Rat) | PR |
| Q10PQ9 | SDS | Cyclin-SDS-like | Oryza sativa subsp japonica (Rice) | PR |
| Q10Q62 | CYCF3-2 | Putative cyclin-F3-2 | Oryza sativa subsp japonica (Rice) | PR |
| Q0JIF2 | CYCB1-1 | Cyclin-B1-1 | Oryza sativa subsp japonica (Rice) | PR |
| A0MEB5 | CYCA3-3 | Cyclin-A3-3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9FMH5 | CYCA3-1 | Putative cyclin-A3-1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O48790 | CYCB1-4 | Cyclin-B1-4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9C6A9 | CYCA3-2 | Cyclin-A3-2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q1PFW3 | SDS | Cyclin-SDS | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGSGGVVHCR | CAKCFCYPTK | RRIRRRPRNL | TILSLPEDVL | FHILKWLSVE | DILAVRAVHS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| QLKDLVDNHA | SVWACASFQE | LWPSPGNLKL | FERAAEKGNF | EAAVKLGIAY | LYNEGLSVSD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| EARAEVNGLK | ASRFFSLAER | LNVGAAPFIW | LFIRPPWSVS | GSCCKAVVHE | SLRAECQLQR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| THKASILHCL | GRVLSLFEDE | EKQQQAHDLF | EEAAHQGCLT | SSYLLWESDR | RTDVSDPGRC |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LHSFRKLRDY | AAKGCWEAQL | SLAKACANAN | QLGLEVRASS | EIVCQLFQAS | QAVSKQQVFS |
| 310 | 320 | 330 | 340 | 350 | 360 |
| VQKGLNDTMR | YILIDWLVEV | ATMKDFTSLC | LHLTVECVDR | YLRRRLVPRY | RLQLLGIACM |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VICTRFISKE | ILTIREAVWL | TDNTYKYEDL | VRMMGEIVSA | LEGKIRVPTV | VDYKEVLLTL |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VPVELRTQHL | CSFLCELSLL | HTSLSAYAPA | RLAAAALLLA | RLTHGQTQPW | TTQLWDLTGF |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SYEDLIPCVL | SLHKKCFHDD | APKDYRQVSL | TAVKQRFEDK | RYGEISQEEV | LSYSQLCAAL |
| 550 | 560 | 570 | 580 | 590 | 600 |
| GVTQDSPDPP | TFLSTGEIHA | FLSSPSGRRT | KRKRENSLQE | DRGSFVTTPT | AELSSQEETL |
| 610 | 620 | 630 | 640 | 650 | 660 |
| LGSFLDWSLD | CCSGYEGDQE | SEGEKEGDVT | APSGILDVTV | VYLNPEQHCC | QESSDEEACP |
| 670 | 680 | 690 | 700 | 710 | 720 |
| EDKGPQDPQA | LALDTQIPAT | PGPKPLVRTS | REPGKDVTTS | GYSSVSTASP | TSSVDGGLGA |
| 730 | 740 | 750 | 760 | 770 | 780 |
| LPQPTSVLSL | DSDSHTQPCH | HQARKSCLQC | RPPSPPESSV | PQQQVKRINL | CIHSEEEDMN |
| LGLVRL |