Q92620
Gene name |
DHX38 (DDX38, KIAA0224, PRP16) |
Protein name |
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 |
Names |
ATP-dependent RNA helicase DHX38, DEAH box protein 38 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:9785 |
EC number |
3.6.4.13: Acting on ATP; involved in cellular and subcellular movement |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
4 structures for Q92620
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 5YZG | EM | 410 A | Z | 1-1227 | PDB |
| 6ZYM | EM | 340 A | r | 1-1227 | PDB |
| 7A5P | EM | 500 A | r | 1-1227 | PDB |
| AF-Q92620-F1 | Predicted | AlphaFoldDB |
985 variants for Q92620
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV001064475 rs145829337 RCV002497458 CA8159861 |
19 | D>N | Retinitis pigmentosa 84 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs375181581 CA8159940 RCV002564087 RCV001244616 |
114 | R>Q | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA8159939 rs370388859 RCV003160294 RCV001042864 |
114 | R>W | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs181471020 RCV001306749 CA8160050 RCV003145543 |
239 | Y>C | Retinitis pigmentosa 84 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs202052654 CA283677155 RCV002547474 RCV001348327 |
250 | T>S | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP TOPMed dbSNP gnomAD |
|
RCV002489576 RCV002551523 RCV001042899 CA8160134 rs61749038 |
308 | T>M | Retinitis pigmentosa 84 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
VAR_081338 rs766053952 CA283678379 RCV001034602 RCV000723361 |
324 | R>Q | Autosomal recessive retinitis pigmentosa Retinitis pigmentosa 84 RP84 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_081339 RCV000128810 rs587777554 CA232802 |
332 | G>D | Retinitis pigmentosa 84 RP84; unknown pathological significance [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
CA8160201 RCV003160350 rs141665378 RCV001046457 |
367 | R>W | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1408544161 RCV002499598 RCV001312562 CA396710654 |
689 | A>S | Retinitis pigmentosa 84 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
RCV001229065 RCV002563714 rs201461331 CA8160568 |
739 | A>T | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1597445687 RCV001003006 CA396712070 |
777 | P>S | Retinitis pigmentosa [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
CA8160644 RCV001345486 RCV002547034 rs201198441 |
798 | V>I | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001045008 rs543465915 RCV002481918 CA8160787 |
944 | R>Q | Variant assessed as Somatic; 0.0 impact. Retinitis pigmentosa 84 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
rs752923486 RCV001535687 CA283691581 RCV001297895 |
1065 | D>H | Retinitis pigmentosa 84 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV001349820 rs1334107858 CA396717130 RCV002545617 |
1130 | M>T | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
CA8161015 rs372331694 RCV002570359 RCV001247735 |
1162 | R>H | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA8161031 rs766256373 RCV002563189 RCV001230800 |
1187 | R>Q | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs1398547672 CA396698256 |
2 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
CA283671962 rs1026619811 |
3 | D>Y | No |
ClinGen gnomAD |
|
|
rs757508246 CA8159852 |
6 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA8159853 rs200560451 |
9 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756649707 CA8159856 |
11 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746213842 CA8159855 |
11 | H>Y | No |
ClinGen ExAC TOPMed |
|
|
CA396698460 rs1253593221 |
12 | R>G | No |
ClinGen gnomAD |
|
|
rs201334464 CA8159857 COSM274780 |
12 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8159860 rs35794819 |
16 | T>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA283672030 rs995615242 |
17 | D>E | No |
ClinGen TOPMed |
|
| TCGA novel | 17 | D>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771686377 CA8159862 |
20 | C>W | No |
ClinGen ExAC gnomAD |
|
|
rs1597437374 CA396698769 |
22 | V>G | No |
ClinGen Ensembl |
|
|
rs989368491 CA283672045 |
23 | G>S | No |
ClinGen TOPMed |
|
|
CA8159864 rs760513325 |
24 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA8159865 rs766282512 |
26 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396698892 rs1567602304 |
27 | C>S | No |
ClinGen Ensembl |
|
|
rs200839114 CA8159867 |
29 | S>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs764293185 CA8159868 |
30 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs867897120 CA283672098 |
32 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs867897120 CA283672100 |
32 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs2042016438 RCV001052986 |
33 | A>V | No |
ClinVar dbSNP |
|
|
CA8159872 rs750813855 |
35 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA8159871 rs148299509 |
35 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396699208 rs1325167973 |
37 | H>D | No |
ClinGen gnomAD |
|
|
CA396699232 rs1175788460 |
38 | V>I | No |
ClinGen gnomAD |
|
|
CA8159874 rs780220340 COSM3818509 |
42 | P>S | breast [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs755424304 CA8159876 |
44 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8159877 rs372776663 |
45 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs747622765 CA8159878 |
45 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs372776663 CA396699382 |
45 | R>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1259786795 CA396699415 |
46 | P>L | No |
ClinGen gnomAD |
|
|
CA8159884 rs558160185 |
50 | G>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8159883 rs777467018 |
50 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1161507548 CA396699611 |
54 | L>M | No |
ClinGen gnomAD |
|
|
rs1036840628 CA283672208 |
55 | A>S | No |
ClinGen gnomAD |
|
|
CA396699622 rs1036840628 |
55 | A>T | No |
ClinGen gnomAD |
|
|
CA8159888 rs150592983 RCV001064724 |
59 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA8159887 rs759595573 |
59 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA8159889 rs574278049 |
61 | E>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396699787 rs1385706449 COSM294307 |
62 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs761973670 CA8159890 |
62 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA396699827 rs1300318716 |
64 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs147365158 CA8159892 |
66 | D>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8159893 rs184511349 |
67 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs2042018268 RCV001313224 |
68 | G>A | No |
ClinVar dbSNP |
|
|
rs1218162604 CA396699900 |
68 | G>R | No |
ClinGen gnomAD |
|
|
rs1201110849 CA396699966 COSM1735258 |
71 | K>N | pancreas [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA283672265 rs200918848 |
72 | K>R | No |
ClinGen Ensembl |
|
| rs1485550444 | 73 | K>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 73 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396700037 rs1243665315 |
75 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA396700036 rs1243665315 |
75 | K>T | No |
ClinGen TOPMed gnomAD |
|
|
rs754175657 CA8159896 |
76 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1216976993 CA396700095 |
79 | Y>C | No |
ClinGen TOPMed |
|
|
CA283672276 rs995120414 |
80 | K>E | No |
ClinGen TOPMed |
|
|
rs1384336494 CA396700114 |
80 | K>M | No |
ClinGen gnomAD |
|
|
CA283672310 rs953728233 |
82 | W>C | No |
ClinGen Ensembl |
|
|
rs755515841 CA8159897 |
82 | W>G | No |
ClinGen ExAC gnomAD |
|
|
rs142792449 CA396700199 |
84 | E>D | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA8159899 rs752261317 |
85 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA8159898 rs779386985 |
85 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1369069743 CA396700270 |
89 | Q>* | No |
ClinGen TOPMed |
|
|
rs1006957063 CA283672340 |
91 | D>G | No |
ClinGen gnomAD |
|
|
rs1310300573 CA396700328 |
92 | A>V | No |
ClinGen TOPMed |
|
|
CA396700353 RCV001301649 rs1408908621 |
94 | E>G | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
RCV001206632 rs777080614 CA8159901 |
95 | E>D | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA8159900 rs757939290 |
95 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA8159902 rs746698158 |
96 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs745656134 CA8159905 |
97 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs781174952 CA8159904 RCV001237868 |
97 | G>S | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs202198465 CA8159906 |
99 | Q>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs775585410 CA8159907 |
99 | Q>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 100 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396700461 rs1201639342 |
102 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs762921890 CA8159909 |
105 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762921890 RCV001320986 CA8159908 |
105 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA283672393 rs1019646325 |
105 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs773113931 CA8159910 |
107 | D>E | No |
ClinGen ExAC gnomAD |
|
|
rs2042026565 RCV001060474 |
111 | R>Q | No |
ClinVar dbSNP |
|
|
rs1404402633 CA396700614 |
111 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs765620584 CA8159934 |
112 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8159935 rs775810927 |
113 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396700628 rs775810927 |
113 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8159936 rs775810927 |
113 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8159937 rs192983504 |
113 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8159941 rs750135709 |
115 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1489752757 CA396700677 |
120 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA8159944 rs749000951 |
121 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
COSM365083 rs780039631 CA8159943 |
121 | P>S | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs748059500 CA8159947 |
123 | G>C | No |
ClinGen ExAC gnomAD |
|
|
CA396700728 rs1363924410 |
125 | S>N | No |
ClinGen gnomAD |
|
|
CA396700738 rs1319262864 |
126 | E>K | No |
ClinGen gnomAD |
|
|
rs769973036 CA8159951 |
127 | E>K | No |
ClinGen ExAC |
|
|
rs1268278116 CA396700803 |
130 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs763215842 CA8159953 |
131 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8159954 rs769008594 |
131 | R>H | No |
ClinGen ExAC gnomAD |
|
|
COSM973448 CA8159956 rs762344139 |
133 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8159955 rs774728184 |
133 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2042028158 RCV001322637 |
134 | Q>H | No |
ClinVar dbSNP |
|
| rs1376393495 | 136 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs2042028262 RCV001301041 |
136 | E>G | No |
ClinVar dbSNP |
|
|
rs1597438058 CA396700880 |
136 | E>Q | No |
ClinGen Ensembl |
|
|
rs760440239 CA8159959 |
137 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs200501313 CA8159958 |
137 | R>W | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
COSM294308 CA8159961 rs753722533 |
139 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA8159960 RCV001070413 rs549408121 |
139 | R>W | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs778702496 COSM230752 CA8159963 |
140 | R>Q | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1050362 CA396700943 |
140 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs145090795 CA8159964 |
141 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA283673002 rs76109028 |
141 | E>G | No |
ClinGen Ensembl |
|
|
RCV001069157 rs2042028826 |
142 | H>R | No |
ClinVar dbSNP |
|
|
CA396700983 rs1159302873 |
143 | G>D | No |
ClinGen gnomAD |
|
|
CA396700993 rs1597438134 |
144 | V>L | No |
ClinGen Ensembl |
|
|
CA396701018 rs1317792592 |
145 | Y>C | No |
ClinGen gnomAD |
|
|
rs1399019104 CA396701007 |
145 | Y>H | No |
ClinGen gnomAD |
|
|
CA396701031 rs1387789860 |
146 | A>S | No |
ClinGen gnomAD |
|
|
CA396701028 rs1387789860 RCV001043048 |
146 | A>T | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
rs1453239145 CA396701039 |
146 | A>V | No |
ClinGen gnomAD |
|
|
CA283673029 RCV001225471 rs972681537 |
147 | S>L | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
rs142444234 RCV001057891 CA8159968 |
150 | E>D | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs780155892 CA8159969 |
151 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA283673074 rs1024050282 |
152 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA283673083 rs749463201 |
153 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 155 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8159973 COSM973449 rs368707127 |
159 | S>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA396701288 rs368707127 |
159 | S>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1173828688 CA396701298 |
160 | R>Q | No |
ClinGen TOPMed |
|
|
CA8159975 rs772921146 |
160 | R>W | No |
ClinGen ExAC gnomAD |
|
|
RCV001233611 rs776376075 CA8159976 |
161 | D>E | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA396701306 rs1183071483 |
161 | D>N | No |
ClinGen gnomAD |
|
|
CA8159978 rs765927258 |
162 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA396701329 rs1158035833 |
162 | R>Q | No |
ClinGen gnomAD |
|
|
CA396701342 rs1180446258 |
163 | D>E | No |
ClinGen TOPMed |
|
|
RCV001221531 CA8159979 rs201640902 |
163 | D>Y | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA8159980 rs764963782 |
164 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA396701368 rs1473799808 |
165 | D>G | No |
ClinGen TOPMed |
|
|
CA8159981 rs752514487 |
166 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1020522001 COSM973450 CA283673158 |
166 | R>H | Variant assessed as Somatic; 0.0 impact. central_nervous_system endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA283673167 rs1020522001 |
166 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA8159982 rs752514487 |
166 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396701409 rs1329354433 |
167 | K>R | No |
ClinGen gnomAD |
|
|
rs764939717 CA8159997 |
171 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA8159999 rs762752248 |
173 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs762752248 CA8160000 |
173 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs775322616 CA8159998 |
173 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA8160001 rs751531063 |
174 | D>N | No |
ClinGen ExAC |
|
|
rs757140615 CA8160002 |
174 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA8160003 rs766421564 |
175 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA8160004 rs568581243 |
178 | H>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1292764256 CA396701599 |
179 | S>N | No |
ClinGen gnomAD |
|
|
CA396701595 rs1434187947 |
179 | S>R | No |
ClinGen TOPMed |
|
|
CA8160005 rs755218183 |
180 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA8160006 rs755218183 |
180 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1220313879 CA396701609 |
180 | S>I | No |
ClinGen gnomAD |
|
|
rs755218183 CA283673691 |
180 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA396701622 rs1290394094 |
181 | R>I | No |
ClinGen TOPMed |
|
|
rs758835301 CA8160008 |
182 | S>* | No |
ClinGen ExAC gnomAD |
|
|
CA8160007 rs748320622 |
182 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs778241309 CA8160009 |
184 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA8160010 rs747539910 |
184 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA8160011 rs771446107 RCV001337302 |
185 | D>H | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
| TCGA novel | 185 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396701664 rs1365784811 |
186 | G>R | No |
ClinGen gnomAD |
|
|
rs1426205084 CA396701677 |
187 | G>R | No |
ClinGen gnomAD |
|
|
CA8160012 rs776044870 |
188 | S>A | No |
ClinGen ExAC |
|
|
CA396701689 rs1567603501 |
188 | S>L | No |
ClinGen Ensembl |
|
|
CA8160013 rs745370411 |
189 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA396701707 rs1382304169 |
190 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
RCV001339787 CA8160014 rs769129571 |
190 | R>H | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1446097881 CA396701729 |
192 | S>T | No |
ClinGen TOPMed |
|
|
CA623281179 rs1567603498 |
194 | R>A | No |
ClinGen Ensembl |
|
|
RCV001298423 rs1567603498 |
194 | R>A* | No |
ClinVar dbSNP |
|
|
CA8160016 rs762555103 |
197 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1243995538 CA396701795 |
198 | E>D | No |
ClinGen gnomAD |
|
|
CA8160019 rs774114256 |
198 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160018 rs774114256 |
198 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770968364 CA283673769 |
200 | P>S | No |
ClinGen Ensembl |
|
|
rs1264540359 CA396701819 |
201 | R>Q | No |
ClinGen TOPMed |
|
|
rs2042041747 RCV001236620 |
202 | H>Y | No |
ClinVar dbSNP |
|
|
rs753918448 CA8160021 COSM1203560 |
203 | R>* | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA283673811 COSM3421150 rs963971164 |
203 | R>Q | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
rs1224928062 CA396701853 |
204 | P>L | No |
ClinGen TOPMed |
|
|
rs1207037408 CA396701848 |
204 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA283677039 rs1009379062 |
207 | A>P | No |
ClinGen TOPMed |
|
|
rs1020312880 CA283677049 |
207 | A>V | No |
ClinGen TOPMed |
|
|
rs1177694533 CA396702533 |
209 | T>S | No |
ClinGen gnomAD |
|
|
rs779492797 CA8160033 |
210 | P>H | No |
ClinGen ExAC gnomAD |
|
|
rs2042053958 RCV001301425 |
212 | R>M | No |
ClinVar dbSNP |
|
|
CA8160034 rs146620694 |
213 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396702573 rs1302679750 |
216 | E>Q | No |
ClinGen gnomAD |
|
|
CA8160036 rs140965988 |
220 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396702629 rs140965988 |
220 | S>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 221 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396702652 rs1335993452 |
222 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
CA8160037 rs761651649 |
223 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs771702994 CA8160038 |
227 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001235664 rs773202438 CA8160039 |
227 | R>H | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs760487486 CA8160040 |
228 | S>P | No |
ClinGen ExAC gnomAD |
|
|
RCV001208360 rs765427167 |
229 | Q>H | No |
ClinVar dbSNP |
|
|
CA396702753 rs1257535071 |
231 | E>Q | No |
ClinGen TOPMed |
|
|
rs201115361 RCV001323457 CA8160042 |
232 | S>L | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA283677076 rs1003246113 |
235 | P>A | No |
ClinGen TOPMed |
|
|
CA283677077 rs893005252 |
235 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs781372374 CA8160047 |
236 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA8160048 rs750964573 |
237 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs181471020 CA8160051 RCV001060746 |
239 | Y>F | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA396702845 rs374768272 |
240 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
RCV001207481 CA8160052 rs374768272 |
240 | R>Q | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA283677092 rs200117403 |
240 | R>W | No |
ClinGen 1000Genomes |
|
|
CA396702948 rs1359532731 |
242 | S>A | No |
ClinGen TOPMed |
|
|
rs1405608952 COSM1238672 CA396702986 |
244 | R>Q | Variant assessed as Somatic; 0.0 impact. oesophagus [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA8160053 rs778546359 |
244 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1217361626 CA396703023 |
246 | H>Q | No |
ClinGen gnomAD |
|
|
CA396703019 rs1365626981 |
246 | H>R | No |
ClinGen gnomAD |
|
|
CA396703033 rs1307797368 |
247 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8160055 RCV001348485 rs369133069 |
247 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA8160056 rs772832163 |
248 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772832163 CA396703048 |
248 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA283677151 rs74649326 |
249 | S>A | No |
ClinGen Ensembl |
|
|
rs1272020330 CA396703059 |
249 | S>F | No |
ClinGen gnomAD |
|
|
CA8160057 rs201793070 |
251 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs770959997 CA8160058 |
252 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA8160059 rs770959997 |
252 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs267604626 CA283677191 |
253 | R>* | No |
ClinGen gnomAD |
|
|
CA8160060 rs763111684 |
253 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1420853781 CA396703126 |
254 | D>G | No |
ClinGen gnomAD |
|
|
rs1322498300 CA396703226 |
258 | R>W | No |
ClinGen TOPMed |
|
|
rs1281150003 CA396703254 |
259 | G>V | No |
ClinGen TOPMed |
|
|
rs1330635087 CA396703261 |
260 | K>R | No |
ClinGen gnomAD |
|
|
rs773681019 CA8160083 |
261 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs761037766 RCV001235556 CA8160084 |
262 | S>L | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs761037766 CA396703286 |
262 | S>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001230926 rs2042059185 |
264 | D>G | No |
ClinVar dbSNP |
|
|
rs766666875 CA8160085 |
264 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160086 rs754377993 |
265 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1472612936 CA396703345 |
268 | P>T | No |
ClinGen gnomAD |
|
|
rs1044592710 CA283677374 |
270 | P>L | No |
ClinGen Ensembl |
|
|
CA8160089 rs752119455 |
271 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs777278940 CA8160091 |
272 | Y>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 273 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs557237564 CA283677396 |
276 | E>K | No |
ClinGen Ensembl |
|
|
CA396703457 rs1470105108 |
278 | A>S | No |
ClinGen gnomAD |
|
|
rs781084397 CA8160094 |
279 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8160095 rs191078136 |
280 | D>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs377243883 CA283677418 |
282 | R>G | No |
ClinGen ESP |
|
|
CA8160096 rs769585747 |
282 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA396703521 rs1179108545 |
283 | H>Y | No |
ClinGen TOPMed |
|
|
CA396703533 rs1388069811 |
284 | L>V | No |
ClinGen Ensembl |
|
|
rs548505029 CA396703549 |
285 | G>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396703542 rs1226114015 |
285 | G>R | No |
ClinGen gnomAD |
|
|
rs548505029 CA8160098 |
285 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396703545 RCV001223066 rs1226114015 |
285 | G>W | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
rs1597439974 CA396703565 |
287 | T>P | No |
ClinGen Ensembl |
|
|
RCV001324883 rs148934675 CA8160099 |
288 | P>L | Variant assessed as Somatic; 0.0004642 impact. [NCI-TCGA] | No |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA8160101 rs760850084 |
289 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160102 rs143671341 |
289 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA396703585 rs143671341 |
289 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs143671341 CA8160103 |
289 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs760079095 CA8160104 |
290 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1254248200 CA396703589 |
290 | L>P | No |
ClinGen gnomAD |
|
|
rs760079095 CA8160106 |
290 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2042060925 RCV001205929 |
291 | S>Y | No |
ClinVar dbSNP |
|
|
CA396703603 rs1460870031 |
292 | R>G | No |
ClinGen TOPMed |
|
|
CA396703615 rs1261005671 |
293 | G>S | No |
ClinGen TOPMed |
|
|
CA396703633 rs370793135 |
294 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
RCV001242791 CA8160107 rs370793135 |
294 | R>Q | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1597440012 CA396703637 |
295 | G>R | No |
ClinGen Ensembl |
|
|
RCV001294902 rs763560423 CA8160125 |
297 | R>C | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs368516031 CA396703699 |
297 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8160126 RCV001049183 rs368516031 |
297 | R>L | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs61749037 CA8160128 RCV000909671 |
301 | E>K | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs553701925 CA8160129 |
302 | E>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396703738 rs1292784728 |
302 | E>K | No |
ClinGen gnomAD |
|
|
rs755861959 CA8160130 |
303 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs1451002433 CA396703769 |
304 | I>M | No |
ClinGen gnomAD |
|
|
rs779862354 CA8160131 |
304 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA8160132 rs753745786 |
305 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754923063 CA8160133 |
307 | D>G | No |
ClinGen ExAC gnomAD |
|
|
RCV001352463 rs2042064243 |
311 | E>missing | No |
ClinVar dbSNP |
|
|
CA8160136 rs771201827 |
311 | E>A | No |
ClinGen ExAC gnomAD |
|
|
rs771943517 CA8160137 |
312 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2042064435 RCV001209733 |
312 | R>W | No |
ClinVar dbSNP |
|
|
rs1567604675 CA396703882 |
314 | Q>K | No |
ClinGen Ensembl |
|
|
rs1597440257 CA396703895 |
315 | W>G | No |
ClinGen Ensembl |
|
|
rs76047777 CA283677760 |
316 | E>G | No |
ClinGen Ensembl |
|
| TCGA novel | 316 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
RCV001321263 rs1477594439 CA396703924 |
317 | D>V | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
CA8160138 rs746035585 |
318 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160139 rs770076206 |
319 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs993744921 CA283677762 |
320 | R>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1363383431 CA396703963 |
320 | R>S | No |
ClinGen gnomAD |
|
|
rs771734588 CA8160163 |
321 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA8160164 rs772761606 |
322 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA396704051 rs1358743832 |
323 | D>G | No |
ClinGen TOPMed |
|
| TCGA novel | 323 | D>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1217647309 CA396704044 |
323 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs766053952 CA8160166 |
324 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396704059 COSM1203564 rs1464865771 |
324 | R>W | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA8160167 rs776349094 |
325 | D>H | No |
ClinGen ExAC |
|
|
CA396704083 rs1323489573 |
326 | W>G | No |
ClinGen TOPMed |
|
|
CA396704098 rs1313134060 |
327 | Y>H | No |
ClinGen TOPMed |
|
|
rs371891907 CA8160168 |
328 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs764946352 CA8160169 |
329 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA396704125 rs1299591435 |
329 | M>T | No |
ClinGen TOPMed |
|
|
rs919370167 CA283678410 |
329 | M>V | No |
ClinGen TOPMed |
|
|
rs929264678 CA283678424 |
330 | D>N | No |
ClinGen TOPMed |
|
|
rs890678223 CA283678425 |
331 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA283678443 rs778981016 |
333 | Y>C | No |
ClinGen Ensembl |
|
|
rs1170401397 CA396704237 |
336 | F>L | No |
ClinGen TOPMed |
|
|
rs866573404 CA283678464 |
337 | H>N | No |
ClinGen Ensembl |
|
|
CA396704246 rs1255027070 |
337 | H>R | No |
ClinGen gnomAD |
|
|
rs537886181 RCV001040422 CA8160175 |
338 | N>S | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA8160176 rs749400680 |
339 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396704294 rs1597440847 |
339 | P>S | No |
ClinGen Ensembl |
|
|
CA8160180 rs535363179 |
341 | A>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8160181 rs535363179 |
341 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs758566056 CA283678536 |
342 | Y>C | No |
ClinGen Ensembl |
|
|
rs553951253 CA8160184 |
344 | S>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8160187 rs765039659 |
345 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA8160186 rs200708769 |
345 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV000996307 CA8160190 rs201188851 |
348 | V>M | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA8160194 rs766325359 |
350 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160195 rs755232918 |
350 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA8160196 rs779464648 RCV001237645 |
351 | R>Q | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1011056954 CA283678637 |
351 | R>W | No |
ClinGen TOPMed |
|
|
rs753110191 CA8160197 |
352 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA396704426 rs753110191 |
352 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA396704438 rs1597440930 |
353 | Q>K | No |
ClinGen Ensembl |
|
|
rs796089970 CA283678650 |
354 | H>R | No |
ClinGen Ensembl |
|
|
CA8160199 rs778359237 |
356 | H>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1248943766 CA396704478 |
356 | H>P | No |
ClinGen gnomAD |
|
|
rs1248943766 CA396704477 |
356 | H>R | No |
ClinGen gnomAD |
|
|
CA396704516 rs1487815874 |
359 | K>N | No |
ClinGen gnomAD |
|
|
CA8160200 COSM1379687 rs138115620 |
362 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
RCV001212716 rs138115620 |
362 | R>L | No |
ClinVar dbSNP |
|
|
RCV001239712 rs2042076658 |
364 | S>A | No |
ClinVar dbSNP |
|
|
CA283678699 rs966449926 |
366 | Q>E | No |
ClinGen TOPMed |
|
|
rs375405645 CA8160202 |
367 | R>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
rs745558826 CA8160203 |
368 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA8160205 rs775320292 |
371 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA8160225 rs773991276 COSM3421151 |
375 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA283679520 rs1042654386 |
376 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs902688833 RCV001205975 CA283679543 |
376 | R>L | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
| TCGA novel | 376 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs963298654 CA283679544 |
381 | R>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 387 | V>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs776911526 CA8160228 |
388 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs200780980 CA8160230 |
389 | H>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs763036639 CA8160232 |
390 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160231 rs775888068 |
390 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751864203 CA8160234 |
392 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160233 rs190847480 |
392 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA8160235 rs757840903 |
393 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs75747454 CA8160237 |
394 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA396705254 rs1221355959 |
395 | E>K | No |
ClinGen gnomAD |
|
|
rs755650259 CA8160239 |
396 | D>E | No |
ClinGen ExAC |
|
|
CA396705267 rs750861792 |
396 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA8160238 rs750861792 |
396 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA396705322 rs1567605677 |
400 | D>H | No |
ClinGen Ensembl |
|
|
rs779488493 CA8160240 |
401 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779488493 CA8160241 |
401 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs565963668 CA8160243 |
402 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
CA8160244 rs747886409 |
402 | A>V | No |
ClinGen ExAC gnomAD |
|
|
COSM1189316 rs771844746 RCV001060181 CA8160245 |
403 | A>T | lung [Cosmic] | No |
ClinGen cosmic curated ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA8160246 rs773289850 |
407 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA8160247 rs539297616 |
409 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8160248 rs557516542 |
411 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
CA283679730 rs866185869 |
415 | P>L | No |
ClinGen Ensembl |
|
|
CA8160249 rs775691753 |
420 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1355536510 CA396705532 |
422 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1056618993 CA283680157 |
427 | P>L | No |
ClinGen gnomAD |
|
|
CA396705669 rs1056618993 |
427 | P>Q | No |
ClinGen gnomAD |
|
|
rs1189035918 CA396705889 |
435 | D>G | No |
ClinGen gnomAD |
|
|
CA396705875 rs1467854623 |
435 | D>N | No |
ClinGen gnomAD |
|
|
CA8160277 rs754315338 |
437 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA8160278 rs758976757 |
437 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA283680213 RCV001041457 rs898528409 |
438 | S>A | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
CA8160279 rs764768532 |
442 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA396706021 rs1394470654 |
443 | I>T | No |
ClinGen gnomAD |
|
|
CA8160280 rs752315632 |
443 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs569480638 CA8160282 |
445 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs758101714 CA8160281 RCV001040653 |
445 | R>W | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs751397301 CA8160283 |
446 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs2042094559 RCV001326164 |
450 | T>I | No |
ClinVar dbSNP |
|
|
rs572242169 CA283680263 |
451 | V>A | No |
ClinGen gnomAD |
|
|
rs1212600704 CA396706138 |
451 | V>L | No |
ClinGen TOPMed |
|
|
rs1212600704 CA396706140 |
451 | V>M | No |
ClinGen TOPMed |
|
|
rs1242770196 CA396706153 |
452 | R>Q | No |
ClinGen gnomAD |
|
|
CA8160284 rs146195196 |
452 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1457069357 CA396706191 |
455 | R>G | No |
ClinGen gnomAD |
|
|
CA396706226 rs1334121795 |
456 | E>D | No |
ClinGen gnomAD |
|
| TCGA novel | 456 | E>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160287 rs768639317 |
460 | R>C | No |
ClinGen ExAC TOPMed |
|
|
COSM1563504 rs779025493 CA8160288 |
460 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA396706321 rs1484779244 |
461 | K>Q | No |
ClinGen gnomAD |
|
|
CA396706336 rs1314926440 |
461 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA396706349 rs1337130238 |
462 | K>R | No |
ClinGen Ensembl |
|
|
CA396706499 rs1198964138 |
463 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA396706546 rs1371171735 |
464 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs777032821 CA8160313 |
465 | H>N | No |
ClinGen ExAC gnomAD |
|
|
CA283680760 rs974256171 |
465 | H>R | No |
ClinGen TOPMed |
|
|
CA396706584 rs1299801143 |
466 | K>I | No |
ClinGen TOPMed gnomAD |
|
|
CA396706580 rs1299801143 |
466 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA283680761 rs556929220 |
468 | W>R | No |
ClinGen Ensembl |
|
| TCGA novel | 469 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1371159718 CA396706656 |
470 | L>M | No |
ClinGen gnomAD |
|
|
CA8160314 rs368629844 |
470 | L>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs61757601 RCV001046175 CA8160315 |
471 | A>V | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA396706701 rs1279240087 |
472 | G>E | No |
ClinGen gnomAD |
|
|
rs1231540187 CA396706694 |
472 | G>R | No |
ClinGen gnomAD |
|
| TCGA novel | 477 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160317 rs139756717 |
478 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 479 | M>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396706827 rs1231636851 |
480 | G>D | No |
ClinGen gnomAD |
|
|
RCV001345893 rs758099171 CA283680817 |
481 | V>I | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
CA8160320 rs199893016 |
485 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8160321 rs144512086 |
490 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396706965 rs1209014572 |
492 | T>A | No |
ClinGen TOPMed |
|
|
RCV000949994 CA8160322 rs36064538 |
492 | T>M | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1461368004 CA396706972 |
493 | E>* | No |
ClinGen gnomAD |
|
|
rs148774432 CA8160323 |
494 | D>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1438511214 CA396707015 |
497 | V>L | No |
ClinGen gnomAD |
|
|
CA396707024 rs1365521693 |
498 | D>N | No |
ClinGen gnomAD |
|
|
rs768626415 CA283680878 |
499 | Y>C | No |
ClinGen gnomAD |
|
|
rs1225208757 CA396707045 |
500 | R>G | No |
ClinGen TOPMed |
|
|
rs1415806169 CA396707255 |
501 | T>A | No |
ClinGen gnomAD |
|
| TCGA novel | 502 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396707304 rs1164147663 |
506 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA396707301 rs1164147663 |
506 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs761435461 CA8160340 |
507 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1402302621 CA396707340 |
509 | M>K | No |
ClinGen gnomAD |
|
|
CA283682575 rs551793007 |
509 | M>V | No |
ClinGen TOPMed |
|
|
CA396707357 rs1289721692 |
510 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1315771966 CA396707365 |
511 | R>I | No |
ClinGen gnomAD |
|
|
CA8160341 rs767182777 RCV000881056 |
511 | R>S | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA283682586 rs951901244 |
512 | K>N | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 513 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396707384 rs1448086110 |
513 | S>T | No |
ClinGen gnomAD |
|
|
COSM267894 CA8160343 rs373210227 |
514 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs766051281 CA8160344 |
516 | S>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA396707434 rs1245650152 |
517 | S>N | No |
ClinGen TOPMed |
|
|
CA396707491 rs1567607313 |
522 | K>R | No |
ClinGen Ensembl |
|
| rs745391363 | 523 | K>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753798741 CA8160346 |
525 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1317574820 CA396707537 |
527 | E>K | No |
ClinGen TOPMed |
|
|
rs2042123542 RCV001207681 |
528 | Q>* | No |
ClinVar dbSNP |
|
|
CA8160347 rs754891695 |
529 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA396707561 rs1432546909 |
529 | R>S | No |
ClinGen TOPMed |
|
|
CA283682617 rs751635490 RCV001346060 |
530 | Q>H | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA8160348 rs764198658 |
530 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757480323 CA8160350 |
531 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1252527355 CA396707585 |
532 | L>R | No |
ClinGen gnomAD |
|
|
CA396707592 rs1483535223 |
533 | P>A | No |
ClinGen gnomAD |
|
|
rs750569490 CA8160352 |
533 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs750569490 CA283682640 |
533 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1407021176 CA396707619 |
536 | A>P | No |
ClinGen gnomAD |
|
|
CA283682647 rs1034426445 |
539 | Q>* | No |
ClinGen Ensembl |
|
|
rs1414635048 CA396707663 |
540 | E>D | No |
ClinGen gnomAD |
|
|
rs756522633 CA8160353 |
542 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA396707696 rs1373088700 |
544 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8160355 rs749851800 |
545 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780542875 CA8160354 |
545 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1292177101 CA396707775 |
547 | D>E | No |
ClinGen TOPMed |
|
|
rs926168195 CA283683181 |
549 | S>N | No |
ClinGen TOPMed |
|
|
CA396707799 rs1229459039 |
549 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA396707808 rs1337548930 |
550 | I>T | No |
ClinGen gnomAD |
|
|
RCV001348452 rs773675029 CA8160373 |
550 | I>V | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA8160375 rs748565651 RCV001244228 COSM168471 |
551 | V>M | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
CA396707836 rs1368183351 |
553 | V>G | No |
ClinGen gnomAD |
|
|
rs1458012762 CA396707832 |
553 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs374496350 CA8160379 RCV001065294 |
554 | V>A | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs746718854 CA8160378 |
554 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs374496350 CA396707840 |
554 | V>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA283683232 rs752237604 |
557 | T>M | No |
ClinGen gnomAD |
|
|
CA396707908 rs1167831350 |
561 | K>T | No |
ClinGen gnomAD |
|
|
CA8160383 rs367927748 |
566 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
RCV001053316 CA396707976 rs1448629075 |
567 | Q>H | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
CA396707989 rs762775948 CA8160385 |
568 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA8160386 rs767675217 |
569 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA396708008 rs1324745737 |
570 | H>R | No |
ClinGen gnomAD |
|
|
CA283683264 rs879012558 |
571 | E>K | No |
ClinGen Ensembl |
|
|
rs766717458 CA8160389 |
572 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA8160388 rs761031450 |
572 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs1210169680 CA396708078 |
575 | T>A | No |
ClinGen TOPMed |
|
|
rs1343138979 CA396708084 |
575 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1235084204 CA396708094 |
576 | D>G | No |
ClinGen gnomAD |
|
|
CA8160390 rs754044294 |
580 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA283683297 rs927045498 |
582 | C>R | No |
ClinGen TOPMed |
|
|
CA396708188 rs1218669009 |
582 | C>Y | No |
ClinGen TOPMed |
|
|
rs1597444285 CA396708197 |
583 | T>P | No |
ClinGen Ensembl |
|
|
CA8160391 rs755422982 |
585 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA396708234 rs1467870826 |
585 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 587 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs765651574 CA8160392 |
589 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA396708293 rs1366174840 |
590 | A>S | No |
ClinGen Ensembl |
|
|
rs1046995419 CA283683326 |
591 | M>T | No |
ClinGen gnomAD |
|
|
rs1476447244 CA396708341 |
593 | V>A | No |
ClinGen gnomAD |
|
|
rs1300318165 CA396708360 |
595 | K>E | No |
ClinGen TOPMed |
|
|
rs758805198 CA8160394 |
596 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA283683377 rs1048763811 |
598 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1005347045 CA283683389 |
600 | E>D | No |
ClinGen Ensembl |
|
|
CA8160395 rs777409230 |
600 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA8160397 CA396708467 CA8160396 rs746488775 |
601 | M>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 603 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs780828640 RCV001318922 COSM973457 CA8160398 |
603 | G>E | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA8160399 rs745472031 |
604 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA8160400 rs745472031 |
604 | N>H | No |
ClinGen ExAC gnomAD |
|
|
rs775116319 CA8160402 |
604 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775116319 CA8160401 |
604 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs147033163 CA8160404 |
605 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760838646 CA8160405 RCV001295426 |
605 | L>P | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs777017958 CA8160407 |
607 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764053841 CA283683472 |
608 | E>D | No |
ClinGen Ensembl |
|
|
rs765677017 CA8160409 |
608 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA8160440 rs748138635 |
609 | V>L | No |
ClinGen ExAC |
|
|
CA8160442 rs200372332 |
614 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1214753965 CA396708860 |
619 | T>I | No |
ClinGen gnomAD |
|
|
CA283683900 rs267604627 |
620 | S>L | No |
ClinGen Ensembl |
|
|
rs1365664234 CA396708964 |
624 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1300827179 CA396708956 |
624 | L>S | No |
ClinGen TOPMed |
|
|
CA283683914 rs908857728 |
625 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
CA396709003 rs1437493098 |
626 | K>N | No |
ClinGen gnomAD |
|
|
rs775609494 CA8160445 |
628 | M>I | No |
ClinGen ExAC gnomAD |
|
|
RCV001045398 rs2042137385 |
638 | L>P | No |
ClinVar dbSNP |
|
|
CA8160450 rs768022071 COSM1203558 |
639 | R>Q | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA8160449 rs147679168 |
639 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396709373 rs1228930974 |
644 | D>N | No |
ClinGen gnomAD |
|
|
CA396709420 rs1215864809 |
646 | Y>C | No |
ClinGen gnomAD |
|
|
rs760133863 CA396709456 |
649 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160452 rs760133863 |
649 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160453 rs765863247 |
650 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1226857663 CA396709487 |
651 | M>V | No |
ClinGen TOPMed |
|
| TCGA novel | 652 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753480712 CA8160455 |
655 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM3721475 rs778919889 CA8160456 |
656 | E>K | upper_aerodigestive_tract [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs558796304 CA283684023 |
657 | R>C | No |
ClinGen 1000Genomes |
|
|
rs1242974689 CA396709645 |
657 | R>H | No |
ClinGen gnomAD |
|
|
rs777861936 CA8160459 |
658 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs1320429536 CA396709685 |
659 | L>P | No |
ClinGen gnomAD |
|
|
CA396709704 rs1339758457 |
660 | N>H | No |
ClinGen TOPMed |
|
|
CA8160460 rs746929014 |
661 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA396709734 rs746929014 |
661 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA8160463 rs370417605 |
662 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 663 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160466 rs544416921 |
669 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8160465 rs544416921 |
669 | R>Q | Variant assessed as Somatic; 4.626e-05 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs768906345 CA8160464 |
669 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396709929 rs1163604909 |
670 | E>D | No |
ClinGen gnomAD |
|
|
CA396710545 rs1174917221 |
671 | V>L | No |
ClinGen gnomAD |
|
|
CA8160499 rs755072364 |
673 | A>D | No |
ClinGen ExAC gnomAD |
|
|
rs1414330529 CA396710559 |
673 | A>S | No |
ClinGen gnomAD |
|
|
CA8160501 rs201984534 |
674 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201984534 CA283684742 |
674 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001304233 rs778940669 CA8160500 |
674 | R>W | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA396710567 COSM1302233 rs1284129655 |
675 | R>H | Variant assessed as Somatic; impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1597444983 CA396710578 |
677 | D>A | No |
ClinGen Ensembl |
|
|
rs778058374 CA8160503 |
677 | D>H | No |
ClinGen ExAC |
|
|
CA8160505 rs771134661 |
681 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8160507 rs746331841 |
682 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8160509 rs775111111 |
686 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762749883 CA8160510 |
687 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs2042146362 RCV001338407 |
689 | A>V | No |
ClinVar dbSNP |
|
| TCGA novel | 693 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1597445022 CA396710698 |
695 | F>S | No |
ClinGen Ensembl |
|
|
CA396710709 rs373027022 |
696 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396710733 rs1477442141 |
700 | P>R | No |
ClinGen gnomAD |
|
|
rs767167121 CA8160514 |
700 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs767167121 CA396710730 |
700 | P>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 701 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160515 RCV001213132 rs575713511 |
701 | I>V | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA8160516 rs760573885 |
703 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765366544 CA8160517 |
707 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752762438 CA8160518 |
707 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752762438 CA396710779 |
707 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1597445063 CA396710781 |
708 | T>A | No |
ClinGen Ensembl |
|
|
CA396710799 rs1567608491 |
710 | P>R | No |
ClinGen Ensembl |
|
|
CA8160520 rs778061162 |
713 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8160522 rs757667383 |
714 | L>H | No |
ClinGen ExAC gnomAD |
|
|
CA283684891 rs868484317 |
715 | F>L | No |
ClinGen Ensembl |
|
|
rs1468799097 CA396710885 |
717 | K>E | No |
ClinGen gnomAD |
|
|
CA396710888 rs1316121408 |
717 | K>R | No |
ClinGen TOPMed |
|
|
CA396711095 rs1567608840 |
723 | Y>C | No |
ClinGen Ensembl |
|
|
rs766828382 CA8160560 |
724 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA8160561 RCV001343316 rs766828382 |
724 | V>M | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs755434661 CA8160562 |
725 | E>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1378741308 CA396711185 |
728 | V>E | No |
ClinGen gnomAD |
|
|
rs1439348766 CA396711231 |
730 | Q>P | No |
ClinGen gnomAD |
|
|
CA8160563 rs372106452 |
731 | S>A | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1377367652 CA396711254 |
731 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
RCV001337874 rs1301087578 CA396711290 |
733 | Q>H | No |
ClinGen ClinVar dbSNP gnomAD |
|
| TCGA novel | 734 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160564 rs747627084 |
734 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1308658867 CA396711316 |
735 | H>Y | No |
ClinGen gnomAD |
|
|
rs757861343 CA8160565 |
737 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001213673 rs149505110 CA8160567 |
738 | G>E | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA396711361 rs1386554399 |
738 | G>W | No |
ClinGen TOPMed |
|
| TCGA novel | 739 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396711370 rs201461331 |
739 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8160569 rs201461331 |
739 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8160572 rs775427416 |
740 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA8160571 RCV001232333 rs769608483 |
740 | P>S | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA396711431 rs1236753685 |
743 | I>V | No |
ClinGen gnomAD |
|
|
rs1194509584 CA396711450 |
744 | L>V | No |
ClinGen gnomAD |
|
|
rs1445631640 CA396711468 |
745 | I>F | No |
ClinGen TOPMed |
|
|
rs767652246 CA8160574 |
747 | M>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA396711524 rs1365407814 |
748 | P>A | No |
ClinGen Ensembl |
|
|
CA283685422 rs981968855 |
752 | D>G | No |
ClinGen TOPMed |
|
|
rs766916615 CA8160577 |
753 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA396711614 rs760947148 |
753 | I>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160576 rs760947148 |
753 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160602 rs751058597 |
756 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA396711812 rs756701702 |
762 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA8160603 rs756701702 |
762 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1276926640 CA396711803 |
762 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA396711806 rs1276926640 |
762 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA396711827 rs1234329941 |
763 | H>Y | No |
ClinGen gnomAD |
|
|
CA396711872 rs1450003326 |
766 | E>K | No |
ClinGen TOPMed |
|
|
rs1292509198 CA396711892 |
767 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
CA396711895 rs1292509198 |
767 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
CA396711909 rs1224684655 |
768 | E>Q | No |
ClinGen TOPMed |
|
|
CA283685592 rs900703623 |
770 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA8160606 rs755907524 |
770 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396711969 rs1260987239 |
771 | P>L | No |
ClinGen gnomAD |
|
|
CA396711974 rs1477471382 COSM1203559 |
772 | A>T | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
RCV001060325 CA396711982 rs1188329722 |
772 | A>V | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs768701016 CA8160609 |
778 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs999939641 CA283685643 |
779 | Y>H | No |
ClinGen Ensembl |
|
|
rs1421044461 CA396712139 |
780 | S>F | No |
ClinGen gnomAD |
|
|
rs771096826 CA8160612 |
789 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA396712322 rs1406144372 |
789 | K>N | No |
ClinGen TOPMed |
|
|
rs200450334 CA283685685 |
790 | I>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA396712331 rs1567609126 |
790 | I>V | No |
ClinGen Ensembl |
|
|
CA396712484 rs1453949268 |
794 | A>D | No |
ClinGen gnomAD |
|
|
CA396712486 rs1453949268 |
794 | A>V | No |
ClinGen gnomAD |
|
|
CA8160642 rs753500280 |
795 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8160645 rs371172065 |
799 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396712517 rs1414419396 |
799 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs200960116 CA8160646 |
802 | I>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396712545 rs1402911992 |
802 | I>V | No |
ClinGen gnomAD |
|
|
rs756084518 CA8160649 |
803 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1438762526 CA396712566 |
804 | A>V | No |
ClinGen gnomAD |
|
|
rs1597445967 CA396712583 |
806 | N>I | No |
ClinGen Ensembl |
|
|
rs1167447709 CA396712589 |
807 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA396712597 rs749485497 |
808 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160651 rs749485497 |
808 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160653 rs774690442 |
809 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs2042164304 RCV001222805 |
810 | T>A | No |
ClinVar dbSNP |
|
| TCGA novel | 810 | T>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160656 rs773525208 |
816 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA396712747 rs1567609379 |
823 | S>T | No |
ClinGen Ensembl |
|
|
rs371648968 CA283686099 |
827 | K>R | No |
ClinGen ESP TOPMed |
|
|
rs759235532 CA8160660 CA396712818 |
829 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA8160686 rs542087489 |
832 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA396712883 rs542087489 |
832 | N>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1014748960 CA283686654 |
833 | P>S | No |
ClinGen TOPMed |
|
|
CA283686664 RCV001041598 rs963172083 |
834 | R>K | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
CA8160688 rs766501167 COSM1679257 |
835 | I>N | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed |
|
rs779137432 CA8160691 |
841 | Q>H | No |
ClinGen ExAC |
|
|
CA396712994 rs1257281986 |
843 | Y>C | No |
ClinGen gnomAD |
|
|
rs758847706 CA8160693 |
844 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs752812393 CA8160692 |
844 | P>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 847 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160694 rs777969746 |
847 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs747620245 CA8160695 |
848 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 849 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160696 rs771552847 |
849 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA396713072 rs1597446366 |
851 | N>T | No |
ClinGen Ensembl |
|
|
CA8160697 rs781742789 |
853 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1447959827 CA396713090 RCV001244356 |
853 | R>W | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs745378759 CA8160699 |
856 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA8160698 rs745378759 |
856 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs1397615764 CA396713113 |
856 | R>Q | No |
ClinGen gnomAD |
|
|
RCV001325897 CA396713126 rs1484814310 |
858 | G>S | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
RCV001208308 CA283686722 rs372311072 |
860 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ESP NCI-TCGA TOPMed dbSNP gnomAD |
|
rs377108419 CA283686726 |
862 | P>R | No |
ClinGen ESP TOPMed |
|
|
rs768558787 CA8160702 |
864 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA8160703 rs774001433 |
865 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA283686748 rs994572951 |
867 | R>M | No |
ClinGen TOPMed |
|
|
CA396713636 rs1451765889 |
867 | R>S | No |
ClinGen TOPMed |
|
|
CA396713218 rs994572951 |
867 | R>T | No |
ClinGen TOPMed |
|
|
rs913734121 CA283690186 |
869 | Y>H | No |
ClinGen Ensembl |
|
|
rs763033504 CA283690210 |
872 | S>I | No |
ClinGen ExAC |
|
|
rs763033504 CA8160727 |
872 | S>N | No |
ClinGen ExAC |
|
|
rs775421345 CA8160726 |
872 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA8160729 rs751768845 |
873 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396713691 rs751768845 |
873 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1293548189 CA396713704 |
874 | Y>C | No |
ClinGen gnomAD |
|
|
CA396713718 rs1369183695 |
875 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA8160730 rs757721832 |
876 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs756673285 CA396713769 |
881 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs756673285 CA8160733 |
881 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA396713793 rs1222605524 |
885 | E>K | No |
ClinGen gnomAD |
|
|
rs1597447223 CA396713808 |
886 | I>T | No |
ClinGen Ensembl |
|
|
rs1487583924 CA396713836 |
889 | T>S | No |
ClinGen gnomAD |
|
|
RCV001227860 rs2042193485 |
892 | A>G | No |
ClinVar dbSNP |
|
|
CA396713875 rs1329636012 |
893 | N>I | No |
ClinGen TOPMed |
|
|
rs1478117513 CA396713915 |
898 | L>V | No |
ClinGen gnomAD |
|
|
rs1220818057 CA396713925 |
899 | K>Q | No |
ClinGen Ensembl |
|
|
CA396713942 rs1401064815 |
901 | L>F | No |
ClinGen TOPMed |
|
|
rs374391366 CA8160738 |
902 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs896703184 CA396713966 |
903 | V>L | No |
ClinGen gnomAD |
|
|
rs896703184 CA283690284 |
903 | V>M | No |
ClinGen gnomAD |
|
|
rs1351087582 CA396713977 |
904 | Q>* | No |
ClinGen gnomAD |
|
|
CA283690297 rs1014176704 |
904 | Q>H | No |
ClinGen Ensembl |
|
|
CA396714096 rs1276633691 |
912 | M>V | No |
ClinGen gnomAD |
|
|
CA283690340 rs565239211 |
914 | P>L | No |
ClinGen gnomAD |
|
|
CA283690370 rs995578851 |
916 | P>L | No |
ClinGen Ensembl |
|
| TCGA novel | 917 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 924 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160747 rs201233417 |
924 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs954063306 CA283690377 |
926 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs750826832 CA8160749 |
928 | W>* | No |
ClinGen ExAC |
|
|
rs768047552 CA8160748 |
928 | W>G | No |
ClinGen ExAC gnomAD |
|
|
rs1485446269 CA396714396 |
931 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1415450076 CA396714416 |
932 | A>S | No |
ClinGen gnomAD |
|
|
rs1415450076 CA396714411 |
932 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs766823639 CA8160751 |
934 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
COSM973461 CA8160753 rs754495430 |
935 | N>K | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
| TCGA novel | 935 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396714570 rs1458828311 |
938 | G>S | No |
ClinGen gnomAD |
|
|
CA396714608 rs1178993099 |
940 | T>I | No |
ClinGen gnomAD |
|
|
rs767582321 RCV001225944 |
942 | T>missing | No |
ClinVar dbSNP |
|
|
CA8160783 rs748267362 |
942 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 943 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396714634 rs1296049923 |
943 | G>R | No |
ClinGen TOPMed |
|
|
CA8160786 rs748855050 |
944 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1238539822 CA396714666 |
946 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
rs759763279 CA8160789 |
950 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs371210072 CA283690608 |
952 | D>H | No |
ClinGen Ensembl |
|
|
rs775937765 CA8160791 |
954 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs756934503 CA8160797 |
957 | K>M | No |
ClinGen ExAC gnomAD |
|
|
CA8160796 rs756934503 |
957 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1597447506 CA396715062 |
964 | D>N | No |
ClinGen Ensembl |
|
|
RCV001337219 rs780160485 CA396715083 CA8160801 |
965 | M>L | No |
ClinGen ExAC TOPMed gnomAD ClinVar dbSNP |
|
|
CA8160800 rs780160485 |
965 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758589733 CA8160802 |
966 | G>D | No |
ClinGen ExAC gnomAD |
|
|
RCV000974642 rs11554765 CA8160804 |
969 | S>F | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs777994979 CA8160803 |
969 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs11554765 CA8160805 |
969 | S>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA283690696 rs868315938 |
970 | E>K | No |
ClinGen gnomAD |
|
|
CA396715202 rs1194754790 |
971 | I>N | No |
ClinGen gnomAD |
|
|
rs746277111 CA8160807 |
974 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA396715253 rs1167626933 |
975 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs776027892 CA8160809 |
976 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA396715282 rs1363593522 |
977 | M>T | No |
ClinGen gnomAD |
|
|
rs1321693158 CA396715278 |
977 | M>V | No |
ClinGen gnomAD |
|
|
CA8160811 rs763664494 |
980 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs1276301193 CA396715367 |
982 | A>V | No |
ClinGen TOPMed |
|
|
rs34482572 RCV001065134 CA8160812 |
983 | I>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA396715428 rs1224754230 |
985 | Y>C | No |
ClinGen gnomAD |
|
|
CA8160815 rs754260205 |
985 | Y>S | No |
ClinGen ExAC |
|
|
rs1418888780 CA396715436 |
986 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA396715469 rs1292750525 |
988 | K>N | No |
ClinGen TOPMed |
|
|
CA8160816 rs761157556 |
988 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA396715554 rs1446813763 |
990 | R>* | No |
ClinGen gnomAD |
|
|
CA396715608 rs1211077003 |
995 | D>H | No |
ClinGen TOPMed |
|
|
CA396715622 rs1334434944 |
996 | Q>H | No |
ClinGen gnomAD |
|
|
CA283691206 rs904519773 |
998 | R>G | No |
ClinGen gnomAD |
|
|
CA396715641 rs1347660881 |
999 | E>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 1000 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160847 rs749679563 |
1003 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs377099982 CA8160848 |
1005 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs748583809 CA8160850 |
1010 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA396715728 rs1377960926 |
1012 | L>V | No |
ClinGen gnomAD |
|
|
CA8160853 rs760196914 |
1017 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001341259 CA396715776 rs1404849186 |
1019 | K>E | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
CA396715787 rs1465822405 |
1020 | N>S | No |
ClinGen gnomAD |
|
|
rs1325817151 CA396715795 |
1021 | N>S | No |
ClinGen TOPMed |
|
|
rs372371401 CA8160855 |
1022 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA283691241 rs1012466749 |
1024 | S>Y | No |
ClinGen gnomAD |
|
|
rs1391314121 CA396715824 |
1025 | T>I | No |
ClinGen gnomAD |
|
|
CA8160856 rs759434051 |
1026 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA8160857 rs764908568 |
1028 | C>F | No |
ClinGen ExAC gnomAD |
|
|
CA396715874 rs1399574643 |
1029 | N>S | No |
ClinGen TOPMed |
|
|
CA8160858 rs752727050 |
1029 | N>Y | No |
ClinGen ExAC gnomAD |
|
|
CA396715887 rs1200820767 |
1030 | D>A | No |
ClinGen gnomAD |
|
|
rs201741501 CA8160860 |
1030 | D>N | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1463937297 CA396715904 |
1031 | H>R | No |
ClinGen TOPMed |
|
|
CA8160862 rs756141729 |
1033 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs531413919 CA8160863 |
1033 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA283691288 rs756141729 RCV001314493 |
1033 | I>V | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs1481394708 CA396715930 |
1035 | A>S | No |
ClinGen gnomAD |
|
|
rs1269925684 CA396715936 |
1036 | K>E | No |
ClinGen gnomAD |
|
|
CA396715959 rs1455250289 |
1038 | M>I | No |
ClinGen gnomAD |
|
|
CA8160866 rs533672883 |
1038 | M>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs970695155 CA283691331 |
1038 | M>V | No |
ClinGen TOPMed |
|
|
CA283691346 rs926645335 |
1039 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs748758426 CA8160867 |
1039 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396715962 COSM973463 rs926645335 |
1039 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs942888461 RCV001229672 CA283691502 |
1042 | R>Q | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs1353239879 CA396716016 |
1042 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA396716028 rs1357454876 |
1043 | E>A | No |
ClinGen gnomAD |
|
|
CA283691510 rs376787122 |
1043 | E>D | No |
ClinGen ESP gnomAD |
|
|
RCV001054618 CA396716023 rs1374089277 |
1043 | E>K | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
rs756873974 CA8160893 |
1044 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs780833182 CA8160895 |
1045 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA8160894 rs780833182 |
1045 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs534381710 RCV001245614 CA8160896 |
1045 | R>Q | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA396716054 rs1447114855 |
1046 | A>V | No |
ClinGen TOPMed |
|
|
CA396716083 rs1244413569 |
1049 | K>N | No |
ClinGen gnomAD |
|
|
CA396716082 rs1182158820 |
1049 | K>R | No |
ClinGen gnomAD |
|
|
rs1049389423 CA283691536 |
1052 | M>T | No |
ClinGen TOPMed |
|
|
rs775146582 RCV001304247 CA8160897 |
1052 | M>V | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs749072478 CA8160898 |
1056 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA396716170 rs1402956202 |
1058 | S>R | No |
ClinGen gnomAD |
|
|
rs904228460 CA283691553 |
1059 | L>Q | No |
ClinGen TOPMed |
|
| TCGA novel | 1060 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160900 rs774324893 |
1061 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8160903 rs776697665 |
1062 | C>W | No |
ClinGen ExAC gnomAD |
|
|
rs752923486 CA8160906 |
1065 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1472062286 CA396716251 |
1066 | W>* | No |
ClinGen TOPMed |
|
|
CA8160907 rs758729606 |
1067 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA283691619 rs1032015879 |
1068 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1316163631 CA396716283 |
1069 | V>I | No |
ClinGen gnomAD |
|
|
rs1488196564 CA396716292 |
1070 | R>K | No |
ClinGen TOPMed |
|
|
rs1264566774 CA396716320 |
1072 | C>Y | No |
ClinGen gnomAD |
|
|
CA396716333 rs1238264478 |
1073 | I>M | No |
ClinGen gnomAD |
|
|
CA396716326 rs1182367540 |
1073 | I>V | No |
ClinGen gnomAD |
|
| TCGA novel | 1079 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781735500 CA8160911 RCV001300458 |
1079 | H>Y | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
CA396716406 rs1434164217 |
1080 | Q>* | No |
ClinGen gnomAD |
|
|
CA396716431 rs1179056834 |
1082 | A>V | No |
ClinGen gnomAD |
|
|
rs779617041 CA8160914 |
1083 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA396716531 rs1341064394 |
1088 | G>W | No |
ClinGen gnomAD |
|
|
rs1597448504 CA396716544 |
1089 | E>G | No |
ClinGen Ensembl |
|
| TCGA novel | 1090 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1597448506 CA396716553 |
1090 | Y>D | No |
ClinGen Ensembl |
|
| TCGA novel | 1091 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396716567 rs1398815604 |
1091 | V>M | No |
ClinGen TOPMed |
|
|
CA8160926 rs751974080 |
1092 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs1172986698 CA396716578 |
1092 | N>S | No |
ClinGen TOPMed |
|
| TCGA novel | 1094 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396716659 rs1267173995 |
1099 | C>* | No |
ClinGen gnomAD |
|
|
CA396716684 rs1490302891 |
1101 | L>F | No |
ClinGen gnomAD |
|
|
rs1424704311 CA396716689 |
1102 | H>P | No |
ClinGen TOPMed |
|
|
CA396716687 rs1597448535 |
1102 | H>Y | No |
ClinGen Ensembl |
|
|
rs1455768301 CA396716706 |
1103 | P>L | No |
ClinGen TOPMed |
|
|
rs755633146 CA396716708 |
1104 | T>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1104 | T>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8160930 rs755633146 |
1104 | T>P | No |
ClinGen ExAC gnomAD |
|
|
rs779606017 CA8160931 |
1105 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA396716723 rs1167350411 |
1105 | S>I | No |
ClinGen gnomAD |
|
|
rs753503526 CA8160932 |
1110 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA396716781 rs1165435485 |
1111 | G>D | No |
ClinGen gnomAD |
|
|
CA8160933 rs754631883 |
1112 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA8160934 rs778481098 |
1113 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs571300179 CA283692048 |
1117 | I>M | No |
ClinGen Ensembl |
|
|
CA8160937 rs777611548 |
1117 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1327952544 CA396716891 |
1119 | Y>C | No |
ClinGen Ensembl |
|
|
CA396716913 rs370276065 |
1120 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1249611694 CA396716910 |
1120 | H>R | No |
ClinGen TOPMed |
|
|
rs1359584289 CA396716919 |
1121 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA396716968 rs1372744128 |
1124 | M>I | No |
ClinGen TOPMed |
|
|
rs1359398151 CA396716958 |
1124 | M>V | No |
ClinGen gnomAD |
|
|
CA396716991 rs1206025368 |
1126 | T>A | No |
ClinGen gnomAD |
|
|
rs1303489043 CA396716993 |
1126 | T>I | No |
ClinGen TOPMed |
|
|
CA283692105 rs878894338 |
1127 | K>Q | No |
ClinGen Ensembl |
|
|
CA8160964 rs760891426 |
1130 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1439847319 CA396717165 |
1132 | C>Y | No |
ClinGen TOPMed |
|
|
CA8160966 rs777082485 |
1134 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs151006640 CA396717197 |
1135 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8160967 rs151006640 |
1135 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1238732747 CA396717206 |
1136 | V>M | No |
ClinGen gnomAD |
|
|
CA283692587 rs200604949 |
1137 | D>Y | No |
ClinGen 1000Genomes gnomAD |
|
|
CA8160969 rs752404534 |
1138 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs77172371 CA8160970 |
1142 | A>G | No |
ClinGen ExAC gnomAD |
|
|
RCV001342372 rs77172371 CA8160971 |
1142 | A>V | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs756951841 CA8160974 |
1143 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs745766528 CA8160977 |
1144 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs781216872 CA8160976 |
1144 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs755171444 CA8160978 |
1146 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA396717360 rs1462004519 |
1147 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1376550254 CA396717352 |
1147 | M>L | No |
ClinGen gnomAD |
|
|
rs536514610 COSM3957807 CA283692634 |
1149 | Y>C | lung [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs1394880972 CA396717418 |
1151 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs929926775 CA283692650 RCV001050373 |
1154 | A>V | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs150139686 CA8160981 |
1156 | K>T | No |
ClinGen ESP ExAC |
|
|
rs773260427 CA8160982 |
1157 | S>* | No |
ClinGen ExAC gnomAD |
|
|
RCV001229725 CA283692677 rs954216217 |
1158 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP gnomAD |
|
CA396717522 rs1484925357 |
1158 | R>W | No |
ClinGen TOPMed |
|
|
CA8160985 rs777172293 |
1159 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA8161013 rs766450703 |
1160 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1597450389 CA396718249 |
1161 | N>T | No |
ClinGen Ensembl |
|
|
rs753686955 CA8161014 |
1162 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161016 rs777703537 |
1163 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1311736252 CA396718266 |
1163 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA396718278 rs1051798890 |
1164 | R>L | No |
ClinGen gnomAD |
|
|
CA283693872 rs1051798890 |
1164 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs527587650 COSM1203557 CA8161017 |
1164 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs757473166 CA8161018 |
1166 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1472694986 CA396718350 |
1168 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1244511955 CA396718355 |
1169 | A>S | No |
ClinGen gnomAD |
|
|
rs1443327443 CA396718365 |
1169 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1008169552 CA283693898 |
1170 | S>F | No |
ClinGen gnomAD |
|
|
CA396718396 rs1409151330 |
1172 | M>V | No |
ClinGen gnomAD |
|
|
rs746253079 CA8161021 |
1174 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs770100144 CA8161022 |
1175 | E>K | No |
ClinGen ExAC gnomAD |
|
|
RCV001219372 rs2042248204 |
1177 | A>V | No |
ClinVar dbSNP |
|
| TCGA novel | 1179 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396718535 rs1182330997 |
1180 | E>* | No |
ClinGen TOPMed |
|
|
rs371083651 CA283693950 |
1180 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA396718534 rs1182330997 |
1180 | E>K | No |
ClinGen TOPMed |
|
|
rs1302241979 CA396718557 |
1181 | E>G | No |
ClinGen gnomAD |
|
|
CA396718543 rs1445687708 |
1181 | E>K | No |
ClinGen gnomAD |
|
|
rs2042248697 RCV001345536 |
1182 | Q>H | No |
ClinVar dbSNP |
|
|
RCV001055912 CA8161028 rs771877681 |
1184 | R>* | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1286240734 CA396718596 |
1184 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA283693961 rs868614922 |
1185 | A>D | No |
ClinGen Ensembl |
|
|
rs1328034954 CA396718604 |
1185 | A>T | No |
ClinGen gnomAD |
|
|
rs772960219 CA396718617 |
1186 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772960219 CA8161029 |
1186 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA283693966 rs1021379081 |
1186 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs201730144 CA8161030 |
1187 | R>W | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1481906925 CA396718676 |
1189 | E>G | No |
ClinGen gnomAD |
|
|
rs1175784265 CA396718687 |
1190 | Q>* | No |
ClinGen gnomAD |
|
|
CA396718689 rs1175784265 |
1190 | Q>E | No |
ClinGen gnomAD |
|
|
CA8161033 RCV001203659 rs201257449 |
1190 | Q>R | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
rs556300781 CA8161034 |
1192 | K>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs751603973 CA8161035 |
1193 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1427263381 CA396718756 |
1193 | R>H | No |
ClinGen gnomAD |
|
|
rs1444364279 CA396718811 |
1197 | G>D | No |
ClinGen gnomAD |
|
|
CA396718806 rs1354980507 |
1197 | G>S | No |
ClinGen gnomAD |
|
| TCGA novel | 1198 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA396718817 rs1386406343 |
1198 | S>G | No |
ClinGen TOPMed |
|
|
CA396718827 rs1349695228 |
1198 | S>T | No |
ClinGen gnomAD |
|
|
rs1405158939 CA396718837 |
1199 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA396718834 rs1405158939 |
1199 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
RCV001240021 CA8161037 rs779997031 |
1200 | R>K | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA8161058 rs564071619 |
1202 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA396719181 rs564071619 |
1202 | T>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1407621313 CA396719186 |
1203 | K>* | No |
ClinGen TOPMed |
|
|
CA396719185 rs1407621313 |
1203 | K>E | No |
ClinGen TOPMed |
|
|
rs1248891404 CA396719197 RCV001323246 |
1204 | I>F | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
rs531516242 CA8161060 |
1205 | Y>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8161062 rs748643643 |
1207 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396719232 rs748643643 |
1207 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161064 rs777419050 |
1209 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA396719242 rs777419050 |
1209 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs758042333 CA8161063 |
1209 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161065 rs746452302 |
1210 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA396719255 rs1461707208 |
1211 | E>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 1212 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1189585022 CA396719259 |
1212 | Q>E | No |
ClinGen gnomAD |
|
|
CA8161066 rs770501194 |
1213 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs192097920 CA283695034 |
1213 | G>R | No |
ClinGen 1000Genomes |
|
|
rs780848345 CA8161067 |
1214 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs745680032 CA8161068 |
1215 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs769597104 CA8161069 CA396719289 |
1216 | M>I | No |
ClinGen ExAC gnomAD |
|
| VAR_015518 | 1217 | T>A | No | UniProt | |
|
CA283695059 rs140035148 COSM107456 |
1218 | P>L | skin [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
RCV001241225 rs772203418 CA8161072 |
1219 | R>C | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs772203418 CA8161073 |
1219 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161074 COSM300046 rs577985660 |
1219 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA8161075 rs766544740 |
1220 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs754063843 CA8161076 |
1220 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161077 rs137867582 RCV000908398 |
1221 | T>M | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA396719315 rs1263796341 |
1222 | P>S | No |
ClinGen gnomAD |
|
|
rs1462749544 CA396719320 |
1223 | A>S | No |
ClinGen gnomAD |
|
|
rs753324635 CA8161080 |
1224 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8161079 rs753324635 |
1224 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs369140795 RCV001246441 CA8161081 |
1224 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
rs1305136232 CA396719334 |
1225 | F>L | No |
ClinGen gnomAD |
|
|
CA8161082 rs751135658 |
1226 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA8161083 rs776387719 |
1227 | L>S | No |
ClinGen ExAC gnomAD |
|
|
CA8161085 rs756750767 |
1227 | L>V | No |
ClinGen ExAC |
|
|
rs747988652 CA8161084 |
1228 | L>S | No |
ClinGen ExAC |
1 associated diseases with Q92620
[MIM: 618220]: Retinitis pigmentosa 84 (RP84)
A form of retinitis pigmentosa, a retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP84 is an autosomal recessive, early onset form characterized by night blindness by age 4 and complete blindness by age 8. Funduscopy shows severely attenuated retinal vessels, severe macular atrophy, and prominent and deep macular colobomas lacking neuroretinal tissue. {ECO:0000269|PubMed:24737827, ECO:0000269|PubMed:30208423}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A form of retinitis pigmentosa, a retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP84 is an autosomal recessive, early onset form characterized by night blindness by age 4 and complete blindness by age 8. Funduscopy shows severely attenuated retinal vessels, severe macular atrophy, and prominent and deep macular colobomas lacking neuroretinal tissue. {ECO:0000269|PubMed:24737827, ECO:0000269|PubMed:30208423}. Note=The disease is caused by variants affecting the gene represented in this entry.
6 regional properties for Q92620
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Helicase, C-terminal | 727 - 902 | IPR001650 |
| conserved_site | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | 647 - 656 | IPR002464 |
| domain | Helicase-associated domain | 922 - 1012 | IPR007502 |
| domain | DEAD/DEAH box helicase domain | 536 - 688 | IPR011545 |
| domain | DEAD-box helicase, OB fold | 1069 - 1146 | IPR011709 |
| domain | Helicase superfamily 1/2, ATP-binding domain | 530 - 714 | IPR014001 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.6.4.13 | Acting on ATP; involved in cellular and subcellular movement |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| catalytic step 2 spliceosome | A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| RNA helicase activity | Unwinding of an RNA helix, driven by ATP hydrolysis. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| mRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
11 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P36009 | DHR2 | Probable ATP-dependent RNA helicase DHR2 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P15938 | PRP16 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P43329 | hrpA | ATP-dependent RNA helicase HrpA | Escherichia coli (strain K12) | PR |
| O60231 | DHX16 | Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 | Homo sapiens (Human) | PR |
| Q8IX18 | DHX40 | Probable ATP-dependent RNA helicase DHX40 | Homo sapiens (Human) | PR |
| Q6P158 | DHX57 | Putative ATP-dependent RNA helicase DHX57 | Homo sapiens (Human) | PR |
| Q7L7V1 | DHX32 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 | Homo sapiens (Human) | PR |
| O43143 | DHX15 | ATP-dependent RNA helicase DHX15 | Homo sapiens (Human) | PR |
| Q9H2U1 | DHX36 | ATP-dependent DNA/RNA helicase DHX36 | Homo sapiens (Human) | PR |
| Q8IY37 | DHX37 | Probable ATP-dependent RNA helicase DHX37 | Homo sapiens (Human) | PR |
| P34498 | mog-1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGDTSEDASI | HRLEGTDLDC | QVGGLICKSK | SAASEQHVFK | APAPRPSLLG | LDLLASLKRR |
| 70 | 80 | 90 | 100 | 110 | 120 |
| EREEKDDGED | KKKSKVSSYK | DWEESKDDQK | DAEEEGGDQA | GQNIRKDRHY | RSARVETPSH |
| 130 | 140 | 150 | 160 | 170 | 180 |
| PGGVSEEFWE | RSRQRERERR | EHGVYASSKE | EKDWKKEKSR | DRDYDRKRDR | DERDRSRHSS |
| 190 | 200 | 210 | 220 | 230 | 240 |
| RSERDGGSER | SSRRNEPESP | RHRPKDAATP | SRSTWEEEDS | GYGSSRRSQW | ESPSPTPSYR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| DSERSHRLST | RDRDRSVRGK | YSDDTPLPTP | SYKYNEWADD | RRHLGSTPRL | SRGRGRREEG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| EEGISFDTEE | ERQQWEDDQR | QADRDWYMMD | EGYDEFHNPL | AYSSEDYVRR | REQHLHKQKQ |
| 370 | 380 | 390 | 400 | 410 | 420 |
| KRISAQRRQI | NEDNERWETN | RMLTSGVVHR | LEVDEDFEED | NAAKVHLMVH | NLVPPFLDGR |
| 430 | 440 | 450 | 460 | 470 | 480 |
| IVFTKQPEPV | IPVKDATSDL | AIIARKGSQT | VRKHREQKER | KKAQHKHWEL | AGTKLGDIMG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| VKKEEEPDKA | VTEDGKVDYR | TEQKFADHMK | RKSEASSEFA | KKKSILEQRQ | YLPIFAVQQE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| LLTIIRDNSI | VIVVGETGSG | KTTQLTQYLH | EDGYTDYGMI | GCTQPRRVAA | MSVAKRVSEE |
| 610 | 620 | 630 | 640 | 650 | 660 |
| MGGNLGEEVG | YAIRFEDCTS | ENTLIKYMTD | GILLRESLRE | ADLDHYSAII | MDEAHERSLN |
| 670 | 680 | 690 | 700 | 710 | 720 |
| TDVLFGLLRE | VVARRSDLKL | IVTSATMDAE | KFAAFFGNVP | IFHIPGRTFP | VDILFSKTPQ |
| 730 | 740 | 750 | 760 | 770 | 780 |
| EDYVEAAVKQ | SLQVHLSGAP | GDILIFMPGQ | EDIEVTSDQI | VEHLEELENA | PALAVLPIYS |
| 790 | 800 | 810 | 820 | 830 | 840 |
| QLPSDLQAKI | FQKAPDGVRK | CIVATNIAET | SLTVDGIMFV | IDSGYCKLKV | FNPRIGMDAL |
| 850 | 860 | 870 | 880 | 890 | 900 |
| QIYPISQANA | NQRSGRAGRT | GPGQCFRLYT | QSAYKNELLT | TTVPEIQRTN | LANVVLLLKS |
| 910 | 920 | 930 | 940 | 950 | 960 |
| LGVQDLLQFH | FMDPPPEDNM | LNSMYQLWIL | GALDNTGGLT | STGRLMVEFP | LDPALSKMLI |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| VSCDMGCSSE | ILLIVSMLSV | PAIFYRPKGR | EEESDQIREK | FAVPESDHLT | YLNVYLQWKN |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| NNYSTIWCND | HFIHAKAMRK | VREVRAQLKD | IMVQQRMSLA | SCGTDWDIVR | KCICAAYFHQ |
| 1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
| AAKLKGIGEY | VNIRTGMPCH | LHPTSSLFGM | GYTPDYIVYH | ELVMTTKEYM | QCVTAVDGEW |
| 1150 | 1160 | 1170 | 1180 | 1190 | 1200 |
| LAELGPMFYS | VKQAGKSRQE | NRRRAKEEAS | AMEEEMALAE | EQLRARRQEQ | EKRSPLGSVR |
| 1210 | 1220 | ||||
| STKIYTPGRK | EQGEPMTPRR | TPARFGL |