O60231
Gene name |
DHX16 |
Protein name |
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 |
Names |
ATP-dependent RNA helicase #3, DEAH-box protein 16 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:8449 |
EC number |
3.6.4.13: Acting on ATP; involved in cellular and subcellular movement |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
730 variants for O60231
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000991227 rs1582953009 CA363109787 RCV000853104 RCV001261676 VAR_083621 |
427 | G>E | Intellectual disability Neuromuscular disease and ocular or auditory anomalies with or without seizures NMOAS [ClinVar, UniProt] | Yes |
Ensembl ClinGen ClinVar dbSNP UniProt |
|
RCV000991225 CA363105332 rs1582940678 VAR_083622 RCV000853102 RCV001261674 |
582 | F>I | Neuromuscular disease and ocular or auditory anomalies with or without seizures Corpus callosum, agenesis of NMOAS; unknown pathological significance [ClinVar, UniProt] | Yes |
Ensembl ClinGen ClinVar dbSNP UniProt |
|
RCV000991228 rs1582931908 CA363103615 VAR_083623 RCV001261677 RCV000853105 |
674 | T>M | Intellectual disability Neuromuscular disease and ocular or auditory anomalies with or without seizures NMOAS; unknown pathological significance [ClinVar, UniProt] | Yes |
Ensembl ClinGen ClinVar dbSNP UniProt |
|
VAR_083624 rs1582931640 RCV001261675 CA363103290 RCV000991226 RCV000853103 |
697 | Q>H | Neuromuscular disease and ocular or auditory anomalies with or without seizures NMOAS; unknown pathological significance [ClinVar, UniProt] | Yes |
Ensembl ClinGen ClinVar dbSNP UniProt |
|
rs141617781 CA3701604 |
4 | P>A | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA363119359 rs1327243651 |
8 | E>G | No |
TOPMed ClinGen |
|
|
rs1431282914 CA363119341 |
9 | R>C | No |
TOPMed ClinGen |
|
|
CA363119332 rs1228636646 |
9 | R>L | No |
gnomAD ClinGen |
|
|
rs1330433257 CA363119322 |
10 | W>R | No |
TOPMed gnomAD ClinGen |
|
|
CA136815165 rs766295819 |
14 | E>* | No |
Ensembl ClinGen |
|
|
rs757705805 CA3701599 |
14 | E>A | No |
ClinGen ExAC gnomAD |
|
|
rs1382782790 CA363119203 |
14 | E>D | No |
TOPMed gnomAD ClinGen |
|
|
CA3701598 rs747391687 |
17 | S>L | No |
ExAC gnomAD ClinGen |
|
|
rs778054207 CA3701597 |
20 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
CA3701596 rs758041320 |
21 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA136815142 rs764895636 |
28 | Q>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701594 COSM1546040 rs764895636 COSM1546039 |
28 | Q>E | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated NCI-TCGA |
|
CA363118943 rs1156645228 |
28 | Q>R | No |
gnomAD ClinGen |
|
|
CA3701592 rs766336363 |
29 | F>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701591 rs766336363 |
29 | F>Y | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs773038887 CA3701589 |
31 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs767254735 CA3701588 |
32 | G>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363118824 rs1465964988 |
33 | T>S | No |
gnomAD ClinGen |
|
|
rs1446997292 CA363118806 |
35 | Q>E | No |
TOPMed ClinGen |
|
|
rs775804588 CA3701586 |
35 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA363118754 rs1303979488 |
37 | C>S | No |
gnomAD ClinGen |
|
|
CA363118728 rs1376516811 |
38 | T>I | No |
TOPMed gnomAD ClinGen |
|
|
rs745872838 CA3701584 |
39 | S>F | No |
ExAC gnomAD ClinGen |
|
|
CA3701583 rs776913795 |
40 | A>T | No |
ExAC gnomAD ClinGen |
|
|
rs1562005531 CA363118685 |
40 | A>V | No |
Ensembl ClinGen |
|
|
CA363118678 rs1437434585 |
41 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
CA363118621 rs1160361737 |
43 | F>S | No |
TOPMed ClinGen |
|
|
CA3701581 rs747516861 |
44 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA363118599 rs1359536181 |
44 | V>M | No |
gnomAD ClinGen |
|
|
rs900873823 CA136815107 |
46 | R>H | No |
TOPMed ClinGen |
|
|
rs778474797 CA3701577 |
48 | R>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1282909984 CA363118470 |
51 | D>G | No |
ClinGen gnomAD |
|
|
rs138442334 CA3701574 |
51 | D>N | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA136815089 rs375439029 |
52 | T>I | No |
ESP TOPMed ClinGen |
|
|
CA3701573 rs756049898 |
53 | L>V | No |
ExAC gnomAD ClinGen |
|
|
CA136815087 rs893315106 |
54 | D>V | No |
Ensembl ClinGen |
|
|
rs947220212 CA136815085 |
55 | L>V | No |
TOPMed ClinGen |
|
|
rs761642337 CA3701571 |
56 | S>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs761642337 CA3701570 |
56 | S>G | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA136815059 rs937628663 |
57 | G>A | No |
Ensembl ClinGen |
|
|
CA3701568 rs765546775 |
58 | P>A | No |
ExAC gnomAD ClinGen |
|
|
rs759892161 CA363118335 |
58 | P>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs759892161 CA3701567 |
58 | P>R | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 58 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs760834926 CA3701564 |
59 | A>G | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701565 rs760834926 |
59 | A>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1364416875 CA363118315 |
60 | R>Q | No |
TOPMed ClinGen |
|
|
CA363118276 rs1314473481 |
61 | D>E | No |
gnomAD ClinGen |
|
| TCGA novel | 61 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3701562 rs748507849 CA3701563 |
62 | F>L | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 64 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs767302887 CA136815026 |
66 | L>V | No |
Ensembl ClinGen |
|
|
rs928660994 CA136815024 |
67 | W>C | No |
TOPMed ClinGen |
|
|
CA3701558 rs748981908 |
68 | N>K | No |
ExAC gnomAD ClinGen |
|
|
rs536316212 CA136815018 |
69 | K>* | No |
1000Genomes ClinGen |
|
|
CA363117417 rs1562002485 |
70 | V>I | No |
Ensembl ClinGen |
|
|
rs1337081499 CA363117381 |
71 | P>S | No |
gnomAD ClinGen |
|
|
rs749683230 CA3701539 |
72 | R>G | No |
ExAC gnomAD ClinGen |
|
|
rs149441313 CA3701538 |
72 | R>Q | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA363117316 rs1210344247 |
75 | V>E | No |
TOPMed ClinGen |
|
|
rs1330157188 CA363117327 |
75 | V>M | No |
gnomAD ClinGen |
|
|
rs769491002 CA3701537 |
76 | V>I | No |
ExAC gnomAD ClinGen |
|
|
CA3701534 rs757235100 |
81 | R>P | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701535 rs757235100 |
81 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701536 rs745365589 |
81 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363117193 rs1328140113 |
83 | A>T | No |
gnomAD ClinGen |
|
|
CA3701533 rs751584086 |
85 | R>L | No |
ExAC gnomAD ClinGen |
|
|
rs1008551246 CA136811504 |
86 | E>K | No |
Ensembl ClinGen |
|
|
CA3701531 rs765108722 |
88 | R>G | No |
ExAC gnomAD ClinGen |
|
|
rs752545067 CA3701530 |
88 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
CA136811497 rs765108722 |
88 | R>W | No |
ExAC gnomAD ClinGen |
|
|
rs750449295 CA3701527 |
89 | A>D | No |
ExAC gnomAD ClinGen |
|
|
CA3701529 rs766509801 |
89 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA3701528 rs750449295 |
89 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs767625377 CA3701526 |
95 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs138934886 CA3701525 |
95 | R>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1031329003 CA136811471 |
102 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
CA363116815 rs1402150502 |
103 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA363116742 rs1562002121 |
105 | E>D | No |
ClinGen Ensembl |
|
|
CA3701523 rs150199797 |
105 | E>G | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701524 rs569916604 |
105 | E>K | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 106 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1234941662 CA363116705 |
106 | S>T | No |
ClinGen gnomAD |
|
|
rs763159288 CA3701522 |
107 | S>N | No |
ExAC gnomAD ClinGen |
|
|
rs1388585461 CA363116577 |
110 | T>I | No |
TOPMed ClinGen |
|
|
CA363116596 rs1300605496 |
110 | T>P | No |
ClinGen gnomAD |
|
|
rs1388585461 CA363116580 |
110 | T>S | No |
TOPMed ClinGen |
|
|
rs1345382040 CA363116528 |
113 | R>G | No |
gnomAD ClinGen |
|
| TCGA novel | 114 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs945089700 CA136811455 |
118 | L>P | No |
Ensembl ClinGen |
|
|
rs1463948647 CA363116312 |
119 | Q>* | No |
gnomAD ClinGen |
|
|
CA3701519 rs745580063 |
119 | Q>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs776246488 CA3701518 |
121 | K>E | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1002656365 CA136811419 |
122 | R>C | No |
TOPMed gnomAD ClinGen |
|
|
rs140919186 RCV000897843 CA3701516 |
122 | R>H | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen ClinVar dbSNP |
|
|
rs140919186 CA3701517 |
122 | R>P | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs777790354 CA3701515 |
123 | K>E | No |
ExAC ClinGen |
|
|
rs758432267 CA3701514 |
124 | K>N | No |
ExAC gnomAD ClinGen |
|
|
rs747886418 CA3701513 |
125 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA136811399 rs367665735 |
125 | R>W | No |
ESP TOPMed gnomAD ClinGen |
|
|
CA363116103 rs1213934689 |
126 | K>R | No |
TOPMed gnomAD ClinGen |
|
|
CA363116104 rs1213934689 |
126 | K>T | No |
TOPMed gnomAD ClinGen |
|
|
CA363116081 rs1464405781 |
127 | H>Q | No |
TOPMed ClinGen |
|
|
rs1445003953 CA363116059 |
128 | L>P | No |
TOPMed gnomAD ClinGen |
|
|
rs756259799 CA3701511 |
129 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701510 rs146582324 |
132 | R>C | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs145669819 CA3701509 |
132 | R>H | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701506 rs764580533 |
135 | E>D | No |
ExAC gnomAD ClinGen |
|
|
CA3701507 rs751641787 |
135 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA363115936 rs1160396919 |
136 | E>D | No |
TOPMed ClinGen |
|
|
CA363115921 rs1411612527 |
138 | E>K | No |
ClinGen TOPMed |
|
|
rs763573836 CA3701504 |
139 | E>K | No |
ExAC gnomAD ClinGen |
|
|
CA3701503 rs775691419 |
140 | A>P | No |
ExAC gnomAD ClinGen |
|
|
CA363115896 rs775691419 |
140 | A>T | No |
ExAC gnomAD ClinGen |
|
|
rs140342281 CA3701502 |
141 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ESP ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs759847615 CA3701501 |
142 | E>D | No |
ExAC gnomAD ClinGen |
|
|
CA3701500 rs146739908 RCV000950702 |
143 | K>I | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen ClinVar dbSNP |
|
|
rs1311111815 CA363115845 |
145 | K>* | No |
TOPMed ClinGen |
|
|
rs1256251257 CA363115834 |
146 | K>E | No |
TOPMed gnomAD ClinGen |
|
|
rs1475198810 CA363115830 |
146 | K>T | No |
gnomAD ClinGen |
|
|
CA3701496 rs772919242 |
147 | K>T | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs142158557 CA3701494 |
149 | G>A | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs142158557 CA3701492 |
149 | G>E | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701483 rs531406624 |
152 | K>E | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA363115750 COSM4006291 COSM4006290 rs531406624 |
152 | K>Q | urinary_tract [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
| TCGA novel | 153 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 156 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363115679 rs1255140068 |
157 | K>N | No |
gnomAD ClinGen |
|
|
CA363115662 rs1426534739 |
158 | P>R | No |
TOPMed ClinGen |
|
|
CA3701482 rs765683432 |
158 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs759879737 CA3701481 |
159 | E>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701480 rs754322442 |
160 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3701478 rs760452608 |
162 | D>E | No |
ExAC gnomAD ClinGen |
|
|
CA363115617 rs1562001174 |
162 | D>N | No |
Ensembl ClinGen |
|
|
CA363115604 rs1419599483 |
163 | E>K | No |
gnomAD ClinGen |
|
|
CA3701477 rs772822396 |
164 | W>G | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 164 | W>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs371865758 CA363115547 |
166 | R>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs371865758 CA363115549 |
166 | R>P | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs371865758 CA136811268 |
166 | R>Q | No |
ESP TOPMed gnomAD ClinGen |
|
|
CA363115551 rs1161145519 |
166 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
rs1376132694 CA363115503 |
169 | R>C | No |
TOPMed gnomAD ClinGen |
|
|
CA136811265 rs1009021407 |
170 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs774288934 CA3701474 |
173 | Q>* | No |
ExAC gnomAD ClinGen |
|
|
CA363115440 rs1395329702 |
173 | Q>R | No |
gnomAD ClinGen |
|
|
rs1460069194 CA363115413 |
176 | E>Q | No |
ClinGen gnomAD |
|
|
CA3701472 rs749075824 |
177 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs779877701 CA3701471 |
178 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA363115391 rs1582969244 |
178 | R>P | No |
Ensembl ClinGen |
|
|
rs1175423625 CA363115328 |
183 | E>Q | No |
ClinGen gnomAD |
|
|
rs41273005 CA3701469 |
186 | R>* | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs1253072340 CA363115298 |
186 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA3701468 rs777887381 |
187 | Q>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs758453050 CA363115284 |
187 | Q>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs563092133 CA3701466 |
188 | R>Q | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs779471513 CA3701465 |
189 | D>V | No |
ExAC ClinGen |
|
|
CA363115239 rs755602303 |
192 | R>G | No |
ExAC gnomAD ClinGen |
|
|
CA363115237 COSM1443078 rs1273530977 COSM1443077 |
192 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs755602303 CA3701464 |
192 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1435685009 CA363115217 |
194 | R>L | No |
TOPMed ClinGen |
|
|
CA3701462 rs766894198 |
195 | N>K | No |
ExAC gnomAD ClinGen |
|
|
rs148698400 CA3701463 |
195 | N>S | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701460 rs765057075 |
199 | R>Q | No |
ExAC ClinGen |
|
|
rs750134942 CA3701461 |
199 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs767091502 CA3701459 |
201 | D>E | No |
ExAC gnomAD ClinGen |
|
|
rs1295170008 CA363115010 |
205 | Y>F | No |
TOPMed gnomAD ClinGen |
|
|
rs776349217 CA3701433 |
206 | E>A | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363114963 rs1314577572 |
208 | A>V | No |
gnomAD ClinGen |
|
|
CA363114958 rs1290599575 |
209 | Q>E | No |
TOPMed ClinGen |
|
|
rs1412855733 CA363114945 |
210 | K>Q | No |
gnomAD ClinGen |
|
|
rs768315559 CA3701432 |
211 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
COSM274779 COSM3697401 CA3701431 rs200028840 |
211 | R>H | large_intestine [Cosmic] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated |
|
rs774668618 CA3701429 |
214 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1169533544 CA363114859 |
215 | A>S | No |
gnomAD ClinGen |
|
|
rs1169533544 CA363114863 |
215 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
rs1475700102 CA363114852 |
215 | A>V | No |
gnomAD ClinGen |
|
|
CA3701428 rs539487104 |
216 | E>K | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs1442322979 CA363114834 |
217 | E>K | No |
gnomAD ClinGen |
|
|
CA3701426 rs780643118 |
219 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
rs749395052 CA3701427 |
219 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs868360979 CA136810932 |
221 | A>V | No |
ClinGen Ensembl |
|
|
rs1479713494 CA363114772 |
222 | M>I | No |
gnomAD ClinGen |
|
|
rs1046620309 CA136810925 |
222 | M>V | No |
Ensembl ClinGen |
|
|
CA363113133 rs1303475838 |
227 | R>Q | No |
TOPMed ClinGen |
|
|
CA363113054 rs1490077235 |
231 | R>C | No |
TOPMed ClinGen |
|
|
CA3701408 rs775767699 |
232 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA136808978 rs1055440195 |
232 | R>Q | No |
gnomAD ClinGen |
|
|
CA363112937 rs1326556771 |
238 | R>Q | No |
TOPMed ClinGen |
|
|
COSM595920 CA3701405 COSM1650592 rs781736063 |
240 | R>* | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ExAC gnomAD ClinGen cosmic curated NCI-TCGA |
|
CA363112909 rs781736063 |
240 | R>G | No |
ExAC gnomAD ClinGen |
|
|
rs199775700 CA3701404 |
240 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
rs1357946376 CA363112674 |
251 | A>G | No |
TOPMed ClinGen |
|
|
CA136808964 rs867744009 |
256 | L>F | No |
Ensembl ClinGen |
|
|
rs1582956581 CA363112571 |
257 | F>L | No |
Ensembl ClinGen |
|
|
rs1285717440 CA363112566 |
257 | F>S | No |
gnomAD ClinGen |
|
|
rs866001534 CA136808961 |
258 | G>E | No |
ClinGen Ensembl |
|
|
CA363112506 rs543187031 |
259 | D>E | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA136808954 rs981312129 |
260 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 261 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs752183721 CA3701400 |
263 | S>N | No |
ExAC ClinGen |
|
|
CA136808940 rs149882569 |
264 | R>L | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA363112425 rs149882569 |
264 | R>P | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701398 rs149882569 |
264 | R>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701399 rs372863262 |
264 | R>W | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA363112406 rs1198429345 |
265 | H>L | No |
gnomAD ClinGen |
|
|
rs201025174 CA136808939 CA136808931 |
265 | H>Q | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs766356884 CA363112402 |
266 | E>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs766356884 CA3701396 |
266 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs139415113 CA3701395 |
267 | R>Q | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs370408566 CA3701394 |
269 | E>K | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3701393 rs377376289 |
272 | Y>C | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
COSM1077392 COSM1077391 rs775677381 CA3701391 |
274 | R>Q | kidney Variant assessed as Somatic; 0.0 impact. endometrium [Cosmic, NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated NCI-TCGA |
|
CA3701392 rs543682795 |
274 | R>W | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA3701389 rs759683664 |
275 | R>* | No |
ExAC gnomAD ClinGen |
|
|
rs577918246 CA3701388 |
275 | R>Q | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs747328985 CA3701386 |
277 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
rs771472379 CA3701387 |
277 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs771684063 CA136808906 |
281 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747759140 CA3701383 |
281 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
rs771684063 CA3701384 |
281 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763949291 CA3701381 |
284 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs147380148 CA3701382 |
284 | R>W | No |
ESP ExAC gnomAD ClinGen |
|
|
rs199869295 CA3701380 |
285 | A>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs752008971 CA136808890 |
288 | E>A | No |
gnomAD ClinGen |
|
|
CA136808882 rs866406485 |
289 | Q>R | No |
Ensembl ClinGen |
|
|
CA3701377 rs750217644 |
290 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
rs1275883803 CA363111952 |
291 | K>E | No |
gnomAD ClinGen |
|
| TCGA novel | 294 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA136808868 rs903369361 |
295 | T>I | No |
TOPMed gnomAD ClinGen |
|
|
rs767458132 CA3701376 |
296 | N>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701375 rs761728114 |
297 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA3701374 COSM3982154 COSM3982153 rs752914344 |
297 | R>H | urinary_tract [Cosmic] | No |
ExAC gnomAD ClinGen cosmic curated |
|
CA136808859 rs893368714 |
299 | H>D | No |
Ensembl ClinGen |
|
|
CA136808855 rs1055903076 |
300 | M>I | No |
Ensembl ClinGen |
|
|
CA136808851 rs947392384 |
303 | E>D | No |
TOPMed gnomAD ClinGen |
|
|
CA3701373 rs765508826 |
305 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs759467481 CA3701372 |
305 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701371 rs34505140 |
306 | G>R | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs755284626 CA363111372 |
310 | R>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs755284626 CA3701353 |
310 | R>G | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs867043752 CA136808668 |
310 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
CA136808666 rs773824772 |
313 | D>E | No |
ClinGen Ensembl |
|
|
rs879150516 CA363111317 |
313 | D>N | No |
TOPMed gnomAD ClinGen |
|
|
rs879150516 CA136808667 |
313 | D>Y | No |
TOPMed gnomAD ClinGen |
|
|
rs1215887577 CA363111301 |
314 | L>V | No |
gnomAD ClinGen |
|
|
CA363111278 rs1224827087 |
316 | E>K | No |
gnomAD ClinGen |
|
|
rs1224827087 CA363111276 |
316 | E>Q | No |
gnomAD ClinGen |
|
|
CA363111160 rs766444822 |
320 | G>E | No |
ExAC gnomAD ClinGen |
|
|
rs766444822 CA3701351 |
320 | G>V | No |
ExAC gnomAD ClinGen |
|
|
CA363111145 rs1446189896 |
321 | A>V | No |
gnomAD ClinGen |
|
|
rs760766321 CA3701350 |
324 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
rs1170740225 CA363111073 |
325 | E>V | No |
TOPMed ClinGen |
|
|
COSM1077389 CA363111040 rs1347907322 |
327 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs773652903 CA3701349 |
327 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs768020321 CA3701348 COSM3358006 COSM3358007 |
328 | R>C | Variant assessed as Somatic; 0.0 impact. haematopoietic_and_lymphoid_tissue [NCI-TCGA, Cosmic] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated NCI-TCGA |
|
COSM1077388 rs940446852 COSM1077387 CA136808645 |
328 | R>H | endometrium [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA363110996 rs1438561474 |
329 | W>* | No |
gnomAD ClinGen |
|
|
rs1253177816 CA363110949 |
331 | E>D | No |
gnomAD ClinGen |
|
|
rs749340666 CA136808636 |
332 | A>V | No |
Ensembl ClinGen |
|
|
CA363110925 rs1487341653 |
333 | R>Q | No |
TOPMed gnomAD ClinGen |
|
|
rs201146701 CA136808631 |
334 | L>V | No |
Ensembl ClinGen |
|
|
CA363110900 rs1217022003 |
335 | G>W | No |
TOPMed gnomAD ClinGen |
|
|
rs769375652 CA3701341 |
340 | K>R | No |
ExAC gnomAD ClinGen |
|
|
CA136808605 rs752836709 |
342 | G>V | No |
Ensembl ClinGen |
|
|
rs1259440756 CA363110799 |
343 | A>V | No |
TOPMed gnomAD ClinGen |
|
|
CA3701339 rs781207840 |
344 | R>* | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 344 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1367228043 CA363110781 |
345 | D>V | No |
gnomAD ClinGen |
|
|
rs757330681 CA3701338 |
346 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs746785622 CA3701337 |
348 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777671505 CA3701336 |
349 | Q>K | No |
ExAC gnomAD ClinGen |
|
|
CA3701335 rs758159706 |
349 | Q>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701334 RCV000961707 rs17189239 VAR_057236 |
352 | K>E | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen ClinVar UniProt dbSNP |
|
|
rs766524035 CA3701333 |
352 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1431075813 CA363110678 |
354 | Q>E | No |
gnomAD ClinGen |
|
|
rs756121109 CA363110670 |
354 | Q>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363110657 rs1165082325 |
356 | V>L | No |
TOPMed ClinGen |
|
|
CA3701330 rs375186453 |
359 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA363110608 rs762359038 |
360 | E>K | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701329 rs762359038 |
360 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3701325 rs764477347 |
363 | I>S | No |
ExAC gnomAD ClinGen |
|
|
CA363110567 rs764477347 |
363 | I>T | No |
ExAC gnomAD ClinGen |
|
|
CA3701326 rs774546044 |
363 | I>V | No |
ExAC gnomAD ClinGen |
|
|
rs1282536992 CA363110561 |
364 | E>K | No |
ClinGen gnomAD |
|
|
CA363110519 rs1311785767 |
367 | R>Q | No |
TOPMed gnomAD ClinGen |
|
|
rs763244622 CA3701324 |
367 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 368 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1296587824 CA363110501 |
369 | T>A | No |
gnomAD ClinGen |
|
|
rs1214878714 CA363110497 |
369 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA136808522 rs368358552 |
370 | Q>* | No |
ESP TOPMed gnomAD ClinGen |
|
|
CA363110493 rs368358552 |
370 | Q>E | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs149565043 CA363110484 |
370 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs138171651 CA3701322 |
371 | L>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA363110476 rs1399312321 |
371 | L>H | No |
gnomAD ClinGen |
|
|
CA3701321 rs759112156 |
372 | Q>K | No |
ExAC ClinGen |
|
|
rs145636542 CA136808503 |
373 | G>D | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs145636542 CA363110453 |
373 | G>V | No |
ESP TOPMed gnomAD ClinGen |
|
|
rs776336422 CA3701320 |
375 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701296 rs755287752 |
376 | E>D | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs760119478 CA3701297 |
376 | E>K | No |
ExAC gnomAD ClinGen |
|
|
CA136808432 rs560138310 |
377 | P>L | No |
TOPMed gnomAD ClinGen |
|
| TCGA novel | 378 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 378 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs572784064 CA3701294 |
380 | P>S | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs1180646496 CA363110288 |
384 | T>I | No |
gnomAD ClinGen |
|
|
rs778732132 CA3701293 |
387 | Q>R | No |
ExAC gnomAD ClinGen |
|
|
CA3701292 rs769976830 |
390 | E>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs781410722 CA3701290 |
390 | E>D | No |
ExAC gnomAD ClinGen |
|
|
rs746046397 CA3701291 |
390 | E>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701289 rs757301268 |
391 | S>F | No |
ExAC gnomAD ClinGen |
|
|
CA363110194 rs1196229493 |
392 | I>T | No |
TOPMed gnomAD ClinGen |
|
|
rs907436587 CA136808316 |
395 | V>I | No |
TOPMed gnomAD ClinGen |
|
|
rs907436587 CA136808317 |
395 | V>L | No |
TOPMed gnomAD ClinGen |
|
|
rs778338647 CA3701287 |
396 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 396 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778338647 CA363110149 |
396 | R>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs758885138 CA3701286 |
397 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1374136350 CA363110137 |
397 | R>H | No |
gnomAD ClinGen |
|
|
CA3701284 rs765737382 |
398 | S>R | No |
ExAC gnomAD ClinGen |
|
|
rs752107979 CA136808311 |
399 | L>F | No |
Ensembl ClinGen |
|
|
CA3701283 rs138855782 |
400 | P>L | No |
ESP ExAC TOPMed ClinGen |
|
|
CA363110104 rs1161886505 |
400 | P>S | No |
ClinGen gnomAD |
|
|
CA363110093 rs1364922470 |
401 | V>A | No |
gnomAD ClinGen |
|
|
rs1180547406 CA363110074 |
403 | P>S | No |
gnomAD ClinGen |
|
|
CA136808297 rs765769878 |
405 | R>G | No |
Ensembl ClinGen |
|
|
rs766136585 CA3701281 |
405 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
CA363110037 rs1194509771 |
406 | E>G | No |
gnomAD ClinGen |
|
|
rs1453609185 CA363110023 |
407 | E>G | No |
gnomAD ClinGen |
|
|
CA363110013 rs760229179 |
408 | L>F | No |
ExAC gnomAD ClinGen |
|
|
CA3701280 rs760229179 |
408 | L>I | No |
ExAC gnomAD ClinGen |
|
|
CA136808286 rs948801905 |
410 | A>P | No |
TOPMed ClinGen |
|
|
CA3701279 rs772658706 |
410 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1286677914 CA363109956 |
413 | A>G | No |
gnomAD ClinGen |
|
|
rs35836922 CA3701278 |
414 | N>D | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1450817205 CA363109899 |
417 | V>D | No |
TOPMed ClinGen |
|
|
rs1321956512 CA363109886 |
418 | L>P | No |
gnomAD ClinGen |
|
|
CA363109891 rs1332508841 |
418 | L>V | No |
gnomAD ClinGen |
|
|
rs768388040 CA3701274 |
420 | I>T | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701271 rs771122502 |
428 | K>N | No |
ExAC gnomAD ClinGen |
|
|
rs1278890088 CA363109762 |
429 | T>S | No |
TOPMed ClinGen |
|
|
CA3701270 rs747097312 |
430 | T>I | No |
ExAC gnomAD ClinGen |
|
|
CA3701269 rs200865497 |
433 | P>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs866629619 CA136808240 |
433 | P>S | No |
Ensembl ClinGen |
|
|
rs140811480 CA3701266 |
437 | F>L | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1561988288 CA363109665 |
437 | F>S | No |
Ensembl ClinGen |
|
|
rs748625139 CA3701265 |
439 | E>G | No |
ExAC gnomAD ClinGen |
|
|
CA3701251 rs764020358 |
440 | G>V | No |
ExAC gnomAD ClinGen |
|
|
CA363108757 rs1443659729 |
442 | T>A | No |
gnomAD ClinGen |
|
|
rs1309179411 CA363108710 |
445 | G>S | No |
TOPMed ClinGen |
|
|
rs1370425622 CA363108642 |
448 | I>T | No |
ClinGen TOPMed |
|
|
rs762729737 CA3701250 |
449 | A>T | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs895940082 CA136807418 |
453 | P>A | No |
gnomAD ClinGen |
|
|
rs895940082 CA363108545 |
453 | P>S | No |
gnomAD ClinGen |
|
|
rs1217230750 CA363108538 |
454 | R>W | No |
gnomAD ClinGen |
|
|
rs771160097 CA3701248 |
458 | A>G | No |
ExAC gnomAD ClinGen |
|
|
rs1340398359 CA363108477 |
458 | A>S | No |
gnomAD ClinGen |
|
|
rs1340398359 CA363108480 |
458 | A>T | No |
gnomAD ClinGen |
|
|
rs1561984873 CA363108456 |
459 | M>I | No |
Ensembl ClinGen |
|
|
CA3701245 rs147746362 |
463 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
1000Genomes ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA363108392 rs1466314577 |
464 | R>* | No |
TOPMed gnomAD ClinGen |
|
|
rs993567817 CA136807407 |
464 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
TOPMed gnomAD ClinGen NCI-TCGA |
|
CA3701244 rs748243153 |
465 | V>M | No |
ExAC gnomAD ClinGen |
|
|
rs779560720 CA3701243 |
466 | A>V | No |
ExAC gnomAD ClinGen |
|
|
rs749651409 CA3701241 |
467 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs199946837 CA3701242 |
467 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3701239 rs780324766 |
471 | V>M | No |
ExAC gnomAD ClinGen |
|
|
rs147782759 CA136807392 |
472 | K>R | No |
ESP ClinGen |
|
|
rs1164551232 CA363108245 |
473 | L>P | No |
ClinGen gnomAD |
|
|
rs1457911719 CA363108203 |
476 | E>A | No |
gnomAD ClinGen |
|
|
rs756958554 CA3701216 |
479 | Y>F | No |
ExAC gnomAD ClinGen |
|
|
rs1355953276 CA363107845 |
490 | R>* | No |
gnomAD ClinGen |
|
|
rs763614322 CA363107842 |
490 | R>P | No |
gnomAD ClinGen |
|
|
CA136807154 rs763614322 |
490 | R>Q | No |
gnomAD ClinGen |
|
|
rs1446309622 CA363107818 |
492 | V>A | No |
gnomAD ClinGen |
|
|
CA3701214 rs777303079 |
493 | L>F | No |
ExAC gnomAD ClinGen |
|
|
CA3701213 rs757933833 |
494 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701212 rs752526477 |
494 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA3701211 rs765226417 |
495 | Y>C | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 499 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753726567 CA3701209 |
500 | M>L | No |
ExAC gnomAD ClinGen |
|
|
rs767826323 CA3701208 |
501 | L>P | No |
ExAC gnomAD ClinGen |
|
|
CA136807139 rs17189232 VAR_057237 |
502 | L>F | No |
TOPMed ClinGen UniProt dbSNP |
|
|
rs530848531 CA136807135 |
503 | R>L | No |
Ensembl ClinGen |
|
|
rs762169796 CA3701207 |
503 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs774747303 CA3701205 |
505 | F>L | No |
ExAC gnomAD ClinGen |
|
|
rs1489590051 CA363107418 |
512 | A>G | No |
TOPMed gnomAD ClinGen |
|
|
CA363107406 rs1239571834 |
513 | S>N | No |
gnomAD ClinGen |
|
|
CA3701201 rs770395316 |
513 | S>R | No |
ExAC gnomAD ClinGen |
|
|
rs746202660 CA3701200 |
515 | S>G | No |
ExAC gnomAD ClinGen |
|
|
CA3701175 rs778527121 |
516 | V>L | No |
ExAC gnomAD ClinGen |
|
|
CA3701176 rs778527121 |
516 | V>M | Variant assessed as Somatic; 5.693e-05 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
CA363106515 rs1234864590 |
518 | M>I | No |
TOPMed ClinGen |
|
|
rs1248126296 CA363106523 |
518 | M>L | No |
gnomAD ClinGen |
|
|
rs1243066094 CA363106394 |
526 | T>I | No |
TOPMed gnomAD ClinGen |
|
|
rs1243066094 CA363106393 |
526 | T>S | No |
TOPMed gnomAD ClinGen |
|
|
rs755910210 CA3701171 |
529 | T>A | No |
ExAC gnomAD ClinGen |
|
|
rs1417800935 CA363106333 |
530 | D>H | No |
ClinGen TOPMed |
|
| TCGA novel | 530 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs750305662 CA3701169 |
531 | I>L | No |
ClinGen ExAC |
|
|
CA136805967 rs889630024 |
531 | I>M | No |
Ensembl ClinGen |
|
| TCGA novel | 532 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1393440689 CA363106221 |
536 | I>V | No |
TOPMed gnomAD ClinGen |
|
|
CA3701168 rs764395120 |
541 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs201631376 CA3701167 |
541 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA3701166 rs752685685 |
543 | R>* | No |
ExAC gnomAD ClinGen |
|
|
rs765318569 CA3701165 |
543 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
| TCGA novel | 547 | K>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs56215804 CA136805934 |
547 | K>R | No |
Ensembl ClinGen |
|
|
rs140427281 CA3701163 |
550 | V>L | No |
ESP ExAC gnomAD ClinGen |
|
|
CA363105979 rs1214748010 |
555 | M>V | No |
Ensembl ClinGen |
|
|
rs1582941027 CA363105965 |
556 | D>N | No |
Ensembl ClinGen |
|
| TCGA novel | 556 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs761015254 CA3701160 |
557 | T>I | No |
ExAC gnomAD ClinGen |
|
|
rs945266742 CA136805884 |
558 | A>P | No |
TOPMed ClinGen |
|
|
CA3701158 rs771594572 |
559 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs747799322 CA3701157 |
559 | R>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363105928 rs771594572 |
559 | R>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs773899552 CA3701156 |
560 | F>I | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1275203486 CA363105884 |
562 | T>I | No |
ClinGen TOPMed |
|
| rs9262138 | 566 | D>D | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3701155 VAR_057238 rs9262138 |
566 | D>G | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen UniProt dbSNP |
|
|
CA363105832 rs1333183758 |
566 | D>H | No |
gnomAD ClinGen |
|
| rs1333183758 | 566 | D>R | No | gnomAD | |
|
CA3701153 rs780140127 |
567 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs139838523 CA3701151 |
571 | R>* | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA363105777 rs1384461457 |
571 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
TOPMed gnomAD ClinGen NCI-TCGA |
|
rs200255671 COSM1443069 COSM1443068 CA3701148 |
575 | R>C | Variant assessed as Somatic; 0.0002315 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated NCI-TCGA |
|
rs916771861 CA136805838 |
575 | R>H | No |
gnomAD ClinGen |
|
|
CA3701147 rs375931735 |
580 | D>G | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs150693640 CA136805821 |
581 | I>F | No |
ESP TOPMed ClinGen |
|
|
rs779015186 CA3701146 |
583 | Y>F | No |
ExAC ClinGen |
|
|
rs1480044055 CA363105295 |
585 | K>R | No |
gnomAD ClinGen |
|
|
rs770700154 CA3701130 |
586 | A>G | No |
ExAC ClinGen |
|
|
rs1319045648 CA363105192 |
591 | Y>C | No |
gnomAD ClinGen |
|
|
rs545668810 CA136805701 |
596 | V>G | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs1213312864 CA363105138 |
596 | V>I | No |
TOPMed gnomAD ClinGen |
|
|
CA363105121 rs1188142279 |
598 | S>T | No |
TOPMed ClinGen |
|
|
rs1380779628 CA363105110 |
599 | V>M | No |
gnomAD ClinGen |
|
|
rs1456666098 CA363105065 |
603 | H>Y | No |
TOPMed ClinGen |
|
|
rs1336326114 CA363105034 |
606 | Q>* | No |
ClinGen gnomAD |
|
|
CA363104992 rs1160634405 |
610 | D>N | No |
TOPMed ClinGen |
|
|
rs1172328526 CA363104918 |
617 | G>R | No |
ClinGen gnomAD |
|
| TCGA novel | 620 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA136805487 rs939518624 |
621 | I>S | No |
gnomAD ClinGen |
|
|
CA363104840 rs939518624 |
621 | I>T | No |
gnomAD ClinGen |
|
|
CA363104821 rs1175785916 |
624 | A>G | No |
TOPMed gnomAD ClinGen |
|
|
CA3701106 rs780270507 |
624 | A>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701105 rs756123183 |
625 | C>Y | No |
ExAC gnomAD ClinGen |
|
|
CA363104781 rs1582939257 |
628 | L>F | No |
Ensembl ClinGen |
|
|
CA363104764 rs1200431014 |
629 | Q>P | No |
gnomAD ClinGen |
|
|
CA3701102 rs757748798 |
631 | R>C | Variant assessed as Somatic; 4.652e-05 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs1291092597 CA363104739 |
631 | R>H | No |
TOPMed gnomAD ClinGen |
|
|
rs751917976 CA3701101 |
633 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3701100 rs764322736 |
633 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs1561977510 CA363104715 |
634 | R>C | No |
Ensembl ClinGen |
|
|
CA3701099 rs758853504 |
634 | R>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363104708 rs758853504 |
634 | R>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701097 rs764984101 |
640 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701098 rs143108219 |
640 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ESP ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA3701096 rs759112019 |
641 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701095 rs776063184 |
643 | L>P | No |
ExAC gnomAD ClinGen |
|
|
CA3701092 rs188172318 |
644 | V>A | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs760489918 CA3701093 |
644 | V>M | No |
ExAC gnomAD ClinGen |
|
|
rs1156484499 CA363104605 |
645 | L>R | No |
ClinGen TOPMed gnomAD |
|
|
CA3701091 rs771794608 |
646 | P>L | No |
ExAC gnomAD ClinGen |
|
|
rs775682128 CA3701089 |
650 | N>D | No |
ExAC gnomAD ClinGen |
|
|
CA3701088 rs770055253 |
650 | N>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1489315940 CA363104522 |
653 | S>C | No |
ClinGen gnomAD |
|
|
rs1455084855 CA363104517 |
654 | D>N | No |
TOPMed ClinGen |
|
|
CA363104497 rs1267614411 |
655 | M>I | No |
gnomAD ClinGen |
|
|
rs757392927 CA3701085 |
655 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363104503 rs1175528052 |
655 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
TOPMed ClinGen NCI-TCGA |
|
CA363104481 rs1313052301 |
657 | A>T | No |
gnomAD ClinGen |
|
|
CA3701084 rs747428805 |
658 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs778439722 CA3701083 |
658 | R>H | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701080 rs753179997 |
661 | Q>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs753179997 CA3701081 |
661 | Q>E | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363104420 rs1363435291 |
662 | P>L | No |
gnomAD ClinGen |
|
|
CA363104404 rs1359412406 |
664 | P>T | No |
gnomAD ClinGen |
|
|
rs764970919 CA3701078 |
665 | P>L | No |
ExAC gnomAD ClinGen |
|
|
rs1310687668 CA363104395 |
665 | P>S | No |
TOPMed gnomAD ClinGen |
|
|
rs1234914828 CA363104381 |
666 | G>A | No |
TOPMed ClinGen |
|
|
rs953836605 CA136805291 |
666 | G>R | No |
gnomAD ClinGen |
|
|
CA3701077 rs754718688 |
668 | R>* | No |
ExAC gnomAD ClinGen |
|
| TCGA novel | 668 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363104348 rs1430871068 |
669 | K>N | No |
TOPMed gnomAD ClinGen |
|
|
rs755572358 CA3701056 |
670 | V>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA136804118 rs755572358 |
670 | V>M | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs766669216 CA3701055 |
672 | V>A | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs766669216 CA363103648 |
672 | V>G | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701053 rs761774062 |
676 | I>V | No |
ExAC gnomAD ClinGen |
|
|
rs918254626 CA136804067 |
678 | E>* | No |
TOPMed gnomAD ClinGen |
|
| TCGA novel | 678 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1127935 CA136804044 |
681 | L>P | No |
Ensembl ClinGen |
|
|
rs756705300 CA136804034 |
683 | I>T | No |
Ensembl ClinGen |
|
|
rs1289616920 CA363103495 |
683 | I>V | No |
ClinGen TOPMed |
|
|
CA3701050 rs762823018 |
687 | I>V | No |
ExAC gnomAD ClinGen |
|
|
CA3701049 rs776653096 |
688 | Y>* | No |
ExAC gnomAD ClinGen |
|
|
CA3701048 rs771253786 |
689 | V>M | No |
ExAC gnomAD ClinGen |
|
|
CA3701046 rs773475555 |
690 | L>Q | No |
ExAC gnomAD ClinGen |
|
|
rs760659356 CA3701047 |
690 | L>V | No |
ExAC gnomAD ClinGen |
|
|
rs780970102 CA136804020 |
692 | P>L | No |
Ensembl ClinGen |
|
|
CA3701045 rs772309170 |
694 | F>L | No |
ExAC gnomAD ClinGen |
|
|
CA3701044 rs748616871 |
700 | Y>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363103258 rs1248236247 |
700 | Y>D | No |
gnomAD ClinGen |
|
|
COSM1634699 CA3701043 COSM1634700 rs141928486 |
703 | R>C | liver [Cosmic] | No |
ESP ExAC gnomAD ClinGen cosmic curated |
|
COSM1443066 rs768833519 COSM3430460 CA3701042 COSM1443067 |
703 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated NCI-TCGA |
|
CA363103217 rs768833519 |
703 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA363103211 rs1242508214 |
704 | T>S | No |
TOPMed ClinGen |
|
| TCGA novel | 705 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1279788475 CA363103152 |
708 | S>L | No |
TOPMed gnomAD ClinGen |
|
|
rs749725967 CA3701040 |
712 | T>I | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363103063 rs1452442502 |
716 | K>* | No |
gnomAD ClinGen |
|
|
CA363102975 rs1431269524 |
719 | A>V | No |
ClinGen gnomAD |
|
|
rs377663318 CA3701019 |
720 | N>S | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs1480095364 CA363102941 |
722 | R>* | No |
ClinGen gnomAD |
|
|
rs770082118 CA3701018 |
722 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701017 rs745478122 |
723 | A>T | No |
ExAC gnomAD ClinGen |
|
|
rs1204634350 CA363102861 |
731 | A>T | No |
gnomAD ClinGen |
|
|
CA136803836 rs929505826 |
733 | K>T | No |
TOPMed gnomAD ClinGen |
|
|
CA136803833 rs866178679 |
736 | R>C | No |
Ensembl ClinGen |
|
|
rs777560628 CA3701012 |
736 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs1469755408 CA363102822 |
737 | L>M | No |
TOPMed ClinGen |
|
|
rs765032528 CA3701009 |
739 | T>I | No |
ExAC gnomAD ClinGen |
|
|
CA363102804 rs750605720 |
740 | A>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3701007 rs750605720 |
740 | A>T | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363102778 rs1284983466 |
743 | Y>C | No |
ClinGen TOPMed |
|
|
CA363102781 rs1561971054 |
743 | Y>H | No |
Ensembl ClinGen |
|
|
CA136803805 rs912635699 |
744 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
Ensembl ClinGen NCI-TCGA |
|
rs986865293 CA136803804 |
744 | Q>P | No |
Ensembl ClinGen |
|
|
rs764473817 CA3701003 |
745 | H>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701004 rs552880669 |
745 | H>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA363102762 rs1324064346 |
746 | E>K | No |
TOPMed ClinGen |
|
|
rs775887737 CA3701001 |
748 | E>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3701000 rs536496808 |
751 | T>I | No |
1000Genomes ExAC gnomAD ClinGen |
|
| TCGA novel | 754 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1241654205 CA363102689 |
756 | Q>H | No |
ClinGen gnomAD |
|
|
CA3700999 rs746238891 |
758 | T>I | No |
ExAC gnomAD ClinGen |
|
|
CA136803747 rs913378227 |
759 | S>G | No |
TOPMed ClinGen |
|
|
rs776263802 CA3700998 |
759 | S>R | No |
ExAC gnomAD ClinGen |
|
|
rs957595875 CA136803671 |
761 | G>V | No |
TOPMed gnomAD ClinGen |
|
|
rs1338826107 CA363102653 |
762 | N>S | No |
TOPMed gnomAD ClinGen |
|
|
CA3700996 rs372472529 |
764 | V>M | No |
ExAC gnomAD ClinGen |
|
|
rs1357471715 CA363102581 |
771 | G>E | No |
gnomAD ClinGen |
|
|
rs1271712412 CA363102568 |
773 | H>R | No |
TOPMed ClinGen |
|
|
rs1291336952 CA363102570 |
773 | H>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
rs1224600820 CA363102562 |
774 | D>Y | No |
gnomAD ClinGen |
|
| TCGA novel | 779 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1281110600 CA363102509 |
781 | L>V | No |
ClinGen gnomAD |
|
|
CA363102502 rs1224034225 |
782 | D>G | No |
TOPMed ClinGen |
|
|
CA3700978 rs770541590 |
782 | D>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs772762809 CA3700977 |
783 | P>A | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363102496 rs1303187079 |
783 | P>R | No |
ClinGen gnomAD |
|
|
CA3700976 rs772762809 |
783 | P>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs149087216 CA3700973 |
786 | Y>C | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs760013002 CA136803528 |
789 | L>V | No |
Ensembl ClinGen |
|
|
rs1028204839 CA136803510 |
790 | L>P | No |
TOPMed gnomAD ClinGen |
|
|
rs1127932 CA136803506 |
792 | A>T | No |
Ensembl ClinGen |
|
|
rs865948231 CA136803472 |
797 | Y>C | No |
Ensembl ClinGen |
|
|
CA3700970 rs779951481 |
797 | Y>H | No |
ExAC gnomAD ClinGen |
|
|
rs751750669 CA3700968 |
803 | N>S | No |
ExAC gnomAD ClinGen |
|
|
CA3700967 rs777867178 |
805 | L>P | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs758503810 CA3700966 |
809 | T>I | No |
ExAC gnomAD ClinGen |
|
|
rs375251870 CA3700964 |
810 | T>M | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 812 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1732308 rs1299946129 CA363102305 COSM1732309 |
813 | R>* | bone [Cosmic] | No |
gnomAD ClinGen cosmic curated |
|
CA363102258 rs1334800788 |
820 | V>L | No |
TOPMed gnomAD ClinGen |
|
|
rs1334800788 CA363102259 |
820 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 823 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 823 | M>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363102226 rs752792393 |
824 | L>P | No |
ExAC gnomAD ClinGen |
|
|
CA3700940 rs752792393 |
824 | L>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3700941 rs758600862 |
824 | L>V | No |
ExAC gnomAD ClinGen |
|
|
rs377757610 CA3700939 |
826 | K>R | No |
ESP ExAC gnomAD ClinGen |
|
|
rs1407260280 CA363102179 |
828 | I>T | No |
gnomAD ClinGen |
|
|
CA3700936 rs373903397 |
829 | L>* | No |
ESP ExAC TOPMed gnomAD ClinGen |
|
|
rs754286215 CA3700938 |
829 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA136803314 rs61757583 |
831 | S>C | No |
ClinGen Ensembl |
|
|
CA3700935 rs756485958 |
831 | S>P | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 833 | K>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1430393779 CA363102097 |
833 | K>T | No |
gnomAD ClinGen |
|
|
rs757650892 CA136801303 |
836 | C>F | No |
ExAC gnomAD ClinGen |
|
|
rs1359624429 CA363101021 |
836 | C>S | No |
gnomAD ClinGen |
|
|
CA3700915 rs757650892 |
836 | C>Y | No |
ExAC gnomAD ClinGen |
|
|
rs1242226640 CA363100985 |
838 | E>G | No |
gnomAD ClinGen |
|
|
CA3700913 rs763910556 |
840 | I>F | No |
ExAC gnomAD ClinGen |
|
|
CA3700914 rs763910556 |
840 | I>V | No |
ExAC gnomAD ClinGen |
|
|
CA363100937 rs762543794 |
842 | T>A | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs762543794 CA3700912 |
842 | T>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700910 rs74945943 |
845 | A>G | No |
ExAC gnomAD ClinGen |
|
|
CA363100903 rs1307429939 |
845 | A>P | No |
gnomAD ClinGen |
|
|
rs1307429939 CA363100900 |
845 | A>T | No |
gnomAD ClinGen |
|
|
CA3700909 rs759353228 |
846 | M>L | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700907 rs770574744 |
846 | M>R | No |
ClinGen ExAC gnomAD |
|
|
CA3700908 rs770574744 |
846 | M>T | No |
ExAC gnomAD ClinGen |
|
|
CA363100888 rs759353228 |
846 | M>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs746813060 CA3700906 |
847 | L>I | No |
ExAC gnomAD ClinGen |
|
|
rs1420762937 CA363100853 |
848 | S>C | No |
gnomAD ClinGen |
|
|
rs774542988 CA363100825 |
850 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749334371 CA3700903 |
851 | N>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs749334371 CA3700904 |
851 | N>T | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363100788 rs779954614 |
853 | I>N | No |
ClinGen ExAC gnomAD |
|
|
rs779954614 CA3700902 |
853 | I>T | No |
ExAC gnomAD ClinGen |
|
|
rs1355262095 CA363100757 |
855 | Y>C | No |
TOPMed gnomAD ClinGen |
|
|
rs891765304 CA136801249 |
856 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
rs1241636419 CA363100746 |
856 | R>Q | No |
gnomAD ClinGen |
|
|
CA363100698 rs1327635072 |
860 | K>Q | No |
gnomAD ClinGen |
|
|
CA136801234 rs535573253 |
862 | V>F | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA3700899 rs535573253 |
862 | V>I | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA363100639 rs1328280313 |
864 | A>V | No |
TOPMed ClinGen |
|
|
CA363100588 rs1301428740 |
868 | R>C | No |
TOPMed gnomAD ClinGen |
|
|
CA3700898 rs188444038 |
868 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
1000Genomes ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs188444038 CA363100582 |
868 | R>P | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs752032921 CA3700897 |
872 | F>L | No |
ExAC gnomAD ClinGen |
|
|
CA363100494 rs1409553886 |
875 | G>D | No |
gnomAD ClinGen |
|
|
rs752429838 CA3700894 |
876 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA363100428 rs1177472754 |
880 | V>A | No |
TOPMed ClinGen |
|
|
rs764604860 CA3700893 |
884 | V>I | No |
ExAC gnomAD ClinGen |
|
|
CA363100349 rs1471850909 |
887 | Q>K | No |
ClinGen TOPMed |
|
|
rs759100521 CA3700892 |
887 | Q>R | No |
ExAC gnomAD ClinGen |
|
|
CA3700878 rs778247205 |
888 | W>* | No |
ExAC gnomAD ClinGen |
|
|
rs1373215963 CA363100285 |
888 | W>C | No |
ClinGen gnomAD |
|
|
rs758857352 CA3700877 |
891 | S>N | No |
ExAC gnomAD ClinGen |
|
|
rs1361099321 CA363100207 |
894 | S>C | No |
ClinGen gnomAD |
|
| TCGA novel | 894 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363100148 rs1247744831 |
898 | C>Y | No |
gnomAD ClinGen |
|
|
CA136801114 rs950016270 |
899 | Y>F | No |
TOPMed ClinGen |
|
| TCGA novel | 900 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753436172 CA3700873 |
904 | Q>H | No |
ExAC gnomAD ClinGen |
|
|
rs754442701 CA3700874 |
904 | Q>R | No |
ExAC gnomAD ClinGen |
|
|
CA3700872 rs766194288 |
906 | R>T | No |
ExAC gnomAD ClinGen |
|
|
CA3700871 rs760565711 |
907 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
rs760565711 CA363100042 |
907 | S>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs920233728 CA136801104 |
908 | M>T | No |
Ensembl ClinGen |
|
|
rs1204598241 COSM185122 CA363100021 |
909 | R>C | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
TOPMed ClinGen cosmic curated NCI-TCGA |
|
CA3700870 rs750378700 |
909 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA3700869 rs767238773 |
910 | R>* | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700868 rs375049305 |
910 | R>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD ClinGen |
|
|
CA3700865 rs759514769 |
912 | R>Q | No |
ExAC gnomAD ClinGen |
|
|
CA3700866 rs551067405 |
912 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1413882055 CA363099979 |
913 | D>N | No |
gnomAD ClinGen |
|
|
CA363099951 rs1389174623 |
915 | R>Q | No |
gnomAD ClinGen |
|
|
CA3700863 rs771170421 |
915 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363099917 rs1410669693 |
917 | Q>H | No |
TOPMed ClinGen |
|
|
rs1236152316 CA363099912 |
918 | L>V | No |
gnomAD ClinGen |
|
|
rs183951964 CA3700861 |
919 | E>G | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
CA3700859 rs772501487 |
920 | G>A | No |
ExAC gnomAD ClinGen |
|
|
rs748615319 CA3700858 |
921 | L>H | No |
ExAC gnomAD ClinGen |
|
|
rs1341634535 CA363099860 |
922 | L>F | No |
gnomAD ClinGen |
|
|
rs879229354 CA136801039 |
924 | R>C | No |
Ensembl ClinGen |
|
|
COSM1077379 rs778406014 COSM1077380 CA3700857 |
924 | R>H | endometrium Variant assessed as Somatic; 4.619e-05 impact. [Cosmic, NCI-TCGA] | No |
ExAC gnomAD ClinGen cosmic curated NCI-TCGA |
|
rs559108150 CA136801016 |
927 | V>A | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs559108150 CA3700855 |
927 | V>G | No |
1000Genomes ExAC gnomAD ClinGen |
|
|
rs779490509 CA3700854 |
928 | G>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs755630229 CA3700853 |
929 | L>F | No |
ExAC ClinGen |
|
|
rs755630229 CA136800999 |
929 | L>V | No |
ExAC ClinGen |
|
|
CA363099763 rs1368963520 |
930 | S>N | No |
TOPMed ClinGen |
|
|
CA363099746 rs1426740790 |
932 | C>Y | No |
TOPMed ClinGen |
|
| TCGA novel | 935 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA363099718 rs1369462385 |
935 | D>H | No |
TOPMed gnomAD ClinGen |
|
|
CA363099720 rs1369462385 |
935 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA363099717 rs1369462385 |
935 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA136800993 rs920554324 |
937 | I>T | No |
TOPMed ClinGen |
|
|
rs370234964 COSM1077375 CA3700849 |
938 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3700848 rs751422882 |
938 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs199903836 CA3700846 |
940 | R>C | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA3700847 rs199903836 |
940 | R>G | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
rs773747627 COSM1443064 CA3700845 COSM1443065 |
940 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA363099583 rs1401661168 |
943 | I>V | No |
gnomAD ClinGen |
|
|
rs755613843 CA3700834 |
946 | G>V | No |
ExAC gnomAD ClinGen |
|
|
CA363099527 rs1184313509 |
947 | Y>* | No |
TOPMed ClinGen |
|
|
rs745438429 CA3700833 |
948 | F>C | No |
ExAC ClinGen |
|
|
CA3700831 rs781088161 |
949 | Y>H | No |
ExAC gnomAD ClinGen |
|
|
CA363099490 rs1472581692 |
950 | H>Y | No |
gnomAD ClinGen |
|
|
rs757261998 CA363099472 |
951 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757261998 CA3700830 |
951 | T>M | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs758142925 CA3700827 |
953 | R>Q | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs763904184 CA3700828 |
953 | R>W | No |
ExAC TOPMed gnomAD ClinGen |
|
|
COSM1443062 rs1447358889 COSM1443063 CA363099419 |
956 | R>Q | large_intestine [Cosmic] | No |
gnomAD ClinGen cosmic curated |
|
CA3700826 rs114836805 |
956 | R>W | No |
1000Genomes ExAC TOPMed gnomAD ClinGen |
|
|
CA3700823 rs202208776 |
959 | Y>* | No |
ExAC gnomAD ClinGen |
|
|
CA3700824 rs760826176 |
959 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA3700822 rs762331918 |
960 | R>C | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700819 rs768994402 |
960 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ExAC TOPMed gnomAD ClinGen NCI-TCGA |
|
CA3700820 rs768994402 |
960 | R>P | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700821 rs762331918 |
960 | R>S | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA3700818 rs749678313 |
961 | T>A | No |
ExAC gnomAD ClinGen |
|
|
CA363099332 rs1431066354 |
963 | K>* | No |
gnomAD ClinGen |
|
|
CA363099328 rs1290338295 |
963 | K>R | No |
gnomAD ClinGen |
|
|
CA363099317 rs1224612482 |
964 | Q>* | No |
TOPMed ClinGen |
|
|
rs1343014410 CA363099301 |
965 | Q>E | No |
TOPMed ClinGen |
|
|
rs1343014410 CA363099303 |
965 | Q>K | No |
TOPMed ClinGen |
|
| rs755421363 | 967 | T>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1023057495 CA136800723 |
970 | I>V | No |
Ensembl ClinGen |
|
|
rs1431499636 CA363099180 |
973 | N>S | No |
gnomAD ClinGen |
|
|
CA363099164 rs1181195985 |
974 | S>C | No |
TOPMed ClinGen |
|
|
rs746910792 CA3700809 |
975 | S>F | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363099135 rs1481281949 |
977 | F>L | No |
TOPMed ClinGen |
|
|
CA136800706 rs199948636 |
979 | Q>H | No |
Ensembl ClinGen |
|
|
rs758209016 CA3700807 |
982 | R>C | No |
ExAC gnomAD ClinGen |
|
|
rs1206620296 CA363099055 |
982 | R>H | No |
TOPMed gnomAD ClinGen |
|
|
CA363099047 rs1464331707 |
983 | W>R | No |
gnomAD ClinGen |
|
|
rs1212221030 CA363098973 |
988 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
gnomAD ClinGen NCI-TCGA |
|
rs780403635 CA3700805 |
994 | K>R | No |
ExAC TOPMed gnomAD ClinGen |
|
|
CA363098901 rs1306585044 |
995 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
TOPMed ClinGen NCI-TCGA |
|
rs1214749991 CA363098898 |
995 | E>G | No |
gnomAD ClinGen |
|
|
CA3700804 rs756363044 |
997 | M>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ExAC gnomAD ClinGen NCI-TCGA |
|
rs750695598 CA3700803 |
998 | R>K | No |
ExAC gnomAD ClinGen |
|
|
CA363098847 rs1434844681 |
998 | R>S | No |
gnomAD ClinGen |
|
|
CA3700783 rs754833325 |
1000 | V>I | No |
ExAC TOPMed gnomAD ClinGen |
|
| TCGA novel | 1002 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA136799771 rs941661155 |
1003 | I>F | No |
TOPMed ClinGen |
|
|
rs750606024 CA3700782 |
1004 | E>D | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs1257412616 CA363098119 |
1006 | S>T | No |
TOPMed ClinGen |
|
|
CA3700781 rs781331484 |
1009 | L>V | No |
ExAC TOPMed gnomAD ClinGen |
|
|
rs757343846 COSM1077373 CA3700780 |
1012 | A>T | Variant assessed as Somatic; 0.0001849 impact. endometrium [NCI-TCGA, Cosmic] | No |
ExAC gnomAD ClinGen cosmic curated NCI-TCGA |
|
rs751636618 CA3700779 |
1016 | Y>C | No |
ExAC gnomAD ClinGen |
|
|
CA363098040 rs1488615230 |
1018 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
TOPMed gnomAD ClinGen NCI-TCGA |
|
rs763413391 CA3700777 |
1018 | A>V | No |
ExAC TOPMed ClinGen |
|
|
rs547315021 CA136799689 |
1023 | D>E | No |
ClinGen 1000Genomes |
|
|
COSM1250050 COSM1250049 rs141923733 CA3700774 |
1031 | K>Q | oesophagus [Cosmic] | No |
ExAC TOPMed gnomAD ClinGen cosmic curated |
|
rs200009023 CA136799686 |
1033 | I>T | No |
TOPMed ClinGen |
|
|
rs1348687007 CA363097906 |
1037 | R>* | No |
TOPMed gnomAD ClinGen |
|
|
rs770548224 CA3700771 |
1037 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA363097884 rs1311268872 |
1040 | L>P | No |
TOPMed ClinGen |
1 associated diseases with O60231
[MIM: 618733]: Neuromuscular oculoauditory syndrome (NMOAS)
An autosomal dominant neuromuscular disorder characterized by variable features including myopathy, neuropathy, hypotonia, joint contractures, growth delay, chorioretinal lacunae, sensorineuronal deafness, agenesis of the corpus callosum, and seizures. {ECO:0000269|PubMed:31256877}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant neuromuscular disorder characterized by variable features including myopathy, neuropathy, hypotonia, joint contractures, growth delay, chorioretinal lacunae, sensorineuronal deafness, agenesis of the corpus callosum, and seizures. {ECO:0000269|PubMed:31256877}. Note=The disease is caused by variants affecting the gene represented in this entry.
6 regional properties for O60231
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Helicase, C-terminal | 598 - 771 | IPR001650 |
| conserved_site | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | 515 - 524 | IPR002464 |
| domain | Helicase-associated domain | 791 - 882 | IPR007502 |
| domain | DEAD/DEAH box helicase domain | 405 - 556 | IPR011545 |
| domain | DEAD-box helicase, OB fold | 939 - 1015 | IPR011709 |
| domain | Helicase superfamily 1/2, ATP-binding domain | 397 - 582 | IPR014001 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.6.4.13 | Acting on ATP; involved in cellular and subcellular movement |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
| U2-type precatalytic spliceosome | A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| RNA helicase activity | Unwinding of an RNA helix, driven by ATP hydrolysis. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| mRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
| RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. |
9 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P20095 | PRP2 | Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P43329 | hrpA | ATP-dependent RNA helicase HrpA | Escherichia coli (strain K12) | PR |
| Q8IY37 | DHX37 | Probable ATP-dependent RNA helicase DHX37 | Homo sapiens (Human) | PR |
| O43143 | DHX15 | ATP-dependent RNA helicase DHX15 | Homo sapiens (Human) | PR |
| Q8IX18 | DHX40 | Probable ATP-dependent RNA helicase DHX40 | Homo sapiens (Human) | PR |
| Q6P158 | DHX57 | Putative ATP-dependent RNA helicase DHX57 | Homo sapiens (Human) | PR |
| Q7L7V1 | DHX32 | Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 | Homo sapiens (Human) | PR |
| Q9H2U1 | DHX36 | ATP-dependent DNA/RNA helicase DHX36 | Homo sapiens (Human) | PR |
| Q92620 | DHX38 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | Homo sapiens (Human) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MATPAGLERW | VQDELHSVLG | LSERHVAQFL | IGTAQRCTSA | EEFVQRLRDT | DTLDLSGPAR |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DFALRLWNKV | PRKAVVEKPA | RAAEREARAL | LEKNRSYRLL | EDSEESSEET | VSRAGSSLQK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KRKKRKHLRK | KREEEEEEEA | SEKGKKKTGG | SKQQTEKPES | EDEWERTERE | RLQDLEERDA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| FAERVRQRDK | DRTRNVLERS | DKKAYEEAQK | RLKMAEEDRK | AMVPELRKKS | RREYLAKRER |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EKLEDLEAEL | ADEEFLFGDV | ELSRHERQEL | KYKRRVRDLA | REYRAAGEQE | KLEATNRYHM |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PKETRGQPAR | AVDLVEEESG | APGEEQRRWE | EARLGAASLK | FGARDAASQE | PKYQLVLEEE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| ETIEFVRATQ | LQGDEEPSAP | PTSTQAQQKE | SIQAVRRSLP | VFPFREELLA | AIANHQVLII |
| 430 | 440 | 450 | 460 | 470 | 480 |
| EGETGSGKTT | QIPQYLFEEG | YTNKGMKIAC | TQPRRVAAMS | VAARVAREMG | VKLGNEVGYS |
| 490 | 500 | 510 | 520 | 530 | 540 |
| IRFEDCTSER | TVLRYMTDGM | LLREFLSEPD | LASYSVVMVD | EAHERTLHTD | ILFGLIKDVA |
| 550 | 560 | 570 | 580 | 590 | 600 |
| RFRPELKVLV | ASATMDTARF | STFFDDAPVF | RIPGRRFPVD | IFYTKAPEAD | YLEACVVSVL |
| 610 | 620 | 630 | 640 | 650 | 660 |
| QIHVTQPPGD | ILVFLTGQEE | IEAACEMLQD | RCRRLGSKIR | ELLVLPIYAN | LPSDMQARIF |
| 670 | 680 | 690 | 700 | 710 | 720 |
| QPTPPGARKV | VVATNIAETS | LTIEGIIYVL | DPGFCKQKSY | NPRTGMESLT | VTPCSKASAN |
| 730 | 740 | 750 | 760 | 770 | 780 |
| QRAGRAGRVA | AGKCFRLYTA | WAYQHELEET | TVPEIQRTSL | GNVVLLLKSL | GIHDLMHFDF |
| 790 | 800 | 810 | 820 | 830 | 840 |
| LDPPPYETLL | LALEQLYALG | ALNHLGELTT | SGRKMAELPV | DPMLSKMILA | SEKYSCSEEI |
| 850 | 860 | 870 | 880 | 890 | 900 |
| LTVAAMLSVN | NSIFYRPKDK | VVHADNARVN | FFLPGGDHLV | LLNVYTQWAE | SGYSSQWCYE |
| 910 | 920 | 930 | 940 | 950 | 960 |
| NFVQFRSMRR | ARDVREQLEG | LLERVEVGLS | SCQGDYIRVR | KAITAGYFYH | TARLTRSGYR |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| TVKQQQTVFI | HPNSSLFEQQ | PRWLLYHELV | LTTKEFMRQV | LEIESSWLLE | VAPHYYKAKE |
| 1030 | 1040 | ||||
| LEDPHAKKMP | KKIGKTREEL | G |