P19113
Gene name |
HDC |
Protein name |
Histidine decarboxylase |
Names |
HDC |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:3067 |
EC number |
4.1.1.22: Carboxy-lyases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
5 structures for P19113
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4E1O | X-ray | 180 A | A/B/C/D/E/F | 2-477 | PDB |
| 7EIW | X-ray | 210 A | A/B | 2-477 | PDB |
| 7EIX | X-ray | 190 A | A/B | 2-477 | PDB |
| 7EIY | X-ray | 220 A | A/B | 2-477 | PDB |
| AF-P19113-F1 | Predicted | AlphaFoldDB |
496 variants for P19113
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000016047 CA257397 rs267606861 |
317 | W>* | Tourette syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
CA392377905 RCV001335910 rs750738762 |
504 | T>K | Tourette syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs758807969 CA7555008 |
2 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372936445 CA7555009 |
2 | M>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA392384588 rs1237186677 |
2 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1264102414 CA392384568 |
3 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA392384572 rs1459387289 |
3 | E>V | No |
ClinGen gnomAD |
|
|
rs919567000 CA270436224 |
4 | P>T | No |
ClinGen gnomAD |
|
|
rs557594582 CA7555006 CA7555005 |
6 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1221255424 CA392384532 |
6 | E>G | No |
ClinGen gnomAD |
|
|
CA392384539 rs1161700056 |
6 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs564770181 CA7555004 |
7 | Y>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs150195640 CA7555002 |
8 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs751474557 CA7555001 |
10 | R>T | No |
ClinGen ExAC gnomAD |
|
|
rs999063311 CA270433924 |
12 | R>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
| TCGA novel | 13 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1202209022 CA392383967 |
15 | V>M | No |
ClinGen TOPMed |
|
|
rs754369996 CA7554980 |
16 | D>Y | No |
ClinGen ExAC |
|
|
rs1264509932 CA392383930 |
18 | I>V | No |
ClinGen gnomAD |
|
|
CA392383906 rs1482277416 |
19 | C>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1482277416 CA392383908 |
19 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
CA392383869 rs1442330148 |
22 | L>P | No |
ClinGen TOPMed |
|
|
rs1285000230 CA392383855 |
23 | S>N | No |
ClinGen gnomAD |
|
|
rs753478644 CA7554977 |
25 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs760172931 CA7554975 |
26 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA270433895 rs768687991 |
26 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA392383821 rs1169074738 |
27 | E>D | No |
ClinGen gnomAD |
|
|
rs1360506689 CA392383824 |
27 | E>G | No |
ClinGen gnomAD |
|
|
CA392383826 rs1466280072 |
27 | E>Q | No |
ClinGen gnomAD |
|
|
rs151062621 CA7554974 |
29 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7554973 rs751179409 |
29 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
VAR_048873 CA7554972 rs17740607 |
31 | T>M | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA392383798 rs17740607 |
31 | T>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA392383800 rs1304055904 |
31 | T>S | No |
ClinGen TOPMed |
|
|
CA7554970 rs771310003 |
32 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554967 rs769903015 |
34 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750405599 COSM168460 CA7554963 |
40 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs750405599 CA392383746 |
40 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554962 rs146730064 |
40 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1311444322 CA392383729 |
43 | L>M | No |
ClinGen gnomAD |
|
|
CA270433807 rs764835512 |
45 | E>K | No |
ClinGen Ensembl |
|
|
rs757038021 CA7554961 |
46 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA270433794 rs958926266 |
47 | A>P | No |
ClinGen Ensembl |
|
|
rs753520294 CA7554960 |
47 | A>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 49 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| VAR_036470 | 49 | E>V | a colorectal cancer sample; somatic mutation [UniProt] | No | UniProt |
|
CA7554959 rs763716383 |
50 | D>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1401414690 CA392383681 |
50 | D>E | No |
ClinGen gnomAD |
|
|
CA392383674 rs1173241935 |
51 | P>L | No |
ClinGen gnomAD |
|
| TCGA novel | 52 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554957 rs752138845 |
52 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 54 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392383650 rs1193352247 |
54 | W>C | No |
ClinGen TOPMed |
|
|
CA392383645 rs1188401791 |
55 | D>G | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 56 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392383637 rs1426352343 |
56 | S>N | No |
ClinGen TOPMed |
|
|
CA7554956 rs767048830 |
58 | F>S | No |
ClinGen ExAC gnomAD |
|
|
CA7554954 rs761793865 |
61 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773638414 COSM3386922 CA7554951 |
63 | R>* | Variant assessed as Somatic; 0.0 impact. pancreas [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7554950 rs769839707 |
63 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA270433746 rs1025616811 |
64 | I>S | No |
ClinGen Ensembl |
|
|
CA392383570 rs1171710102 |
66 | M>I | No |
ClinGen TOPMed |
|
|
CA7554949 rs748410745 |
66 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA392383564 rs1244886074 |
67 | P>L | No |
ClinGen gnomAD |
|
| rs1306653916 | 68 | G>= | Variant assessed as Somatic; 4.628e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1407352313 CA392383307 |
69 | V>M | No |
ClinGen gnomAD |
|
|
rs1405335125 CA392383291 |
70 | V>A | No |
ClinGen TOPMed |
|
| TCGA novel | 74 | S>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554928 CA392383181 rs777030044 |
74 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392383188 rs1467753232 |
74 | S>T | No |
ClinGen TOPMed |
|
|
CA7554925 rs201907439 |
79 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 86 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 86 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554921 rs563105054 |
88 | P>R | No |
ClinGen 1000Genomes ExAC TOPMed |
|
|
rs777385565 CA7554922 |
88 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs34505468 CA270429241 |
91 | L>I | No |
ClinGen Ensembl |
|
| TCGA novel | 92 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1215274893 CA392382906 |
94 | M>V | No |
ClinGen gnomAD |
|
|
CA392382843 rs1198322537 |
98 | A>S | No |
ClinGen gnomAD |
|
| TCGA novel | 98 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs751002474 CA7554917 |
99 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs138934117 CA7554916 |
100 | N>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7554914 rs138934117 |
100 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs138934117 CA7554915 |
100 | N>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7554913 rs544960069 |
102 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392382766 rs1595709999 |
105 | T>P | No |
ClinGen Ensembl |
|
|
rs762333131 CA7554912 |
105 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA392382724 rs1410506324 |
108 | S>A | No |
ClinGen gnomAD |
|
|
rs753017067 CA7554891 |
109 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA7554890 rs201124926 |
111 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1393684396 CA392382688 |
113 | T>I | No |
ClinGen TOPMed |
|
|
rs923688180 CA270428249 |
115 | L>Q | No |
ClinGen TOPMed |
|
|
rs1315288643 CA392382661 |
117 | M>I | No |
ClinGen TOPMed |
|
|
CA270428237 rs957751058 |
119 | V>A | No |
ClinGen gnomAD |
|
|
rs143849528 CA7554886 |
119 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs946556520 CA270428226 |
120 | M>R | No |
ClinGen TOPMed |
|
|
CA392382633 rs1288277759 |
121 | D>V | No |
ClinGen gnomAD |
|
|
CA392382630 rs1357094872 |
122 | W>R | No |
ClinGen gnomAD |
|
|
rs1317457539 CA392382612 |
124 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1444905329 CA392382600 |
126 | M>L | No |
ClinGen gnomAD |
|
|
CA7554884 rs768488249 |
127 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
CA392382580 rs1330505497 |
129 | L>I | No |
ClinGen gnomAD |
|
|
rs371786661 CA392382563 |
131 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1442650456 CA392382569 |
131 | E>K | No |
ClinGen gnomAD |
|
|
CA392382558 rs1162524971 |
132 | H>R | No |
ClinGen gnomAD |
|
|
rs991148658 CA270428179 |
132 | H>Y | No |
ClinGen TOPMed |
|
| TCGA novel | 133 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392382535 rs1385366348 |
135 | H>R | No |
ClinGen gnomAD |
|
|
rs1404279453 CA392382537 |
135 | H>Y | No |
ClinGen gnomAD |
|
|
CA7554882 rs779819166 |
136 | H>N | No |
ClinGen ExAC gnomAD |
|
|
CA7554881 rs771467751 |
137 | H>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA270428134 rs999335585 |
138 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1481784417 CA392382511 |
139 | S>G | No |
ClinGen gnomAD |
|
|
rs149875043 CA7554879 |
139 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA392382483 rs1490650265 |
143 | G>R | No |
ClinGen gnomAD |
|
|
rs754422633 CA7554877 |
145 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1224136151 CA392382457 |
147 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 148 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554850 rs751827833 COSM256158 |
149 | T>M | Variant assessed as Somatic; 9.24e-05 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7554851 rs751827833 |
149 | T>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392382076 rs1432093196 |
151 | S>N | No |
ClinGen gnomAD |
|
|
rs1477551448 CA392382043 |
156 | I>V | No |
ClinGen gnomAD |
|
|
CA392382032 rs1402027198 |
157 | A>V | No |
ClinGen gnomAD |
|
|
CA7554847 rs753757813 |
160 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1188351365 CA392382013 |
161 | A>E | No |
ClinGen gnomAD |
|
|
rs763958975 CA7554846 |
162 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs1255568371 CA392381970 |
167 | L>P | No |
ClinGen gnomAD |
|
|
CA392381966 rs1202800858 |
168 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA7554843 rs536269902 |
169 | M>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7554844 rs770752888 |
169 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759209383 CA7554842 |
171 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA270425245 rs370679774 |
171 | T>P | No |
ClinGen Ensembl |
|
|
CA392381935 rs1383401679 |
173 | E>Q | No |
ClinGen gnomAD |
|
|
CA392381927 rs1376537758 |
174 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA7554838 rs190015441 |
175 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs748624520 CA7554836 |
176 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs781596252 CA7554835 |
177 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA392381897 rs1334335115 |
178 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1284847971 CA392381901 |
178 | E>K | No |
ClinGen TOPMed |
|
|
rs550968265 CA270425176 |
179 | S>F | No |
ClinGen Ensembl |
|
|
CA392381860 rs1422060543 |
184 | R>* | Variant assessed as Somatic; 4.62e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA7554833 rs747227627 |
184 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780307521 CA392381856 |
185 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780307521 CA7554832 |
185 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554830 rs758629922 |
186 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392381842 rs1338733010 |
187 | A>V | No |
ClinGen gnomAD |
|
|
rs1188561492 CA392381818 |
190 | S>A | No |
ClinGen gnomAD |
|
| TCGA novel | 193 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392381621 rs181713189 |
198 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs181713189 CA7554803 |
198 | E>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762670331 CA7554802 |
199 | K>M | No |
ClinGen ExAC gnomAD |
|
|
rs369160695 CA7554801 |
200 | A>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs764798779 CA7554800 |
206 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA270424634 rs755149141 |
212 | P>L | No |
ClinGen Ensembl |
|
|
rs776214133 CA7554798 |
213 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA7554797 rs761199216 |
215 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1288124934 CA392381253 |
216 | N>D | No |
ClinGen TOPMed |
|
|
rs775780391 CA7554795 |
219 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1350902290 CA392381182 |
220 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
CA7554794 rs772476286 |
220 | R>Q | Variant assessed as Somatic; 4.621e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA270424612 rs1049341617 |
222 | E>K | No |
ClinGen Ensembl |
|
| TCGA novel | 227 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA270424595 rs867414908 |
229 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs535880699 CA270424593 |
231 | D>E | No |
ClinGen Ensembl |
|
|
CA7554791 rs376573427 |
233 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs777913889 CA7554790 |
234 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554788 rs754928207 |
234 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777913889 CA7554789 |
234 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392380860 rs1387392968 |
235 | G>D | No |
ClinGen gnomAD |
|
|
rs746967529 CA7554787 |
236 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA392380840 rs1467988358 |
237 | V>L | No |
ClinGen gnomAD |
|
|
CA7554785 rs758334668 |
239 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA392380812 rs758334668 |
239 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392380717 rs1445486385 |
241 | V>A | No |
ClinGen TOPMed |
|
|
rs142761358 CA392380696 |
243 | A>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA7554760 rs142761358 |
243 | A>V | No |
ClinGen ESP ExAC gnomAD |
|
|
COSM701096 rs767958947 CA7554758 |
247 | T>N | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs376350679 CA7554757 |
248 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7554755 rs766790335 |
250 | V>F | No |
ClinGen ExAC gnomAD |
|
|
CA392380600 rs1393228312 |
252 | A>T | No |
ClinGen TOPMed |
|
|
rs763065285 CA7554754 |
253 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA7554753 rs773633332 |
255 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA392380510 rs1177786838 |
263 | C>W | No |
ClinGen gnomAD |
|
|
rs1379962071 CA392380509 |
264 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA392380505 rs1274259699 |
264 | A>V | No |
ClinGen TOPMed |
|
|
rs200711064 CA7554721 |
265 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200711064 CA7554722 |
265 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
COSM272765 rs138457034 CA7554720 |
265 | R>H | large_intestine haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs138457034 CA7554719 |
265 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA392380502 rs138457034 |
265 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1433365377 CA392380494 |
266 | E>D | No |
ClinGen gnomAD |
|
|
rs1187431034 CA392380490 |
267 | G>E | No |
ClinGen TOPMed |
|
|
rs899820647 CA270423172 |
270 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs765719055 CA7554718 |
272 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392380435 rs1420516350 |
275 | A>V | No |
ClinGen gnomAD |
|
|
CA7554714 rs760867913 |
279 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554713 rs775446332 |
282 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs141554251 CA270423143 |
284 | P>T | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA392380376 VAR_036471 rs1353958864 COSM32362 |
285 | E>K | large_intestine a colorectal cancer sample; somatic mutation [Cosmic, UniProt] | No |
ClinGen cosmic curated UniProt dbSNP gnomAD |
|
rs935621896 CA7554708 |
287 | R>Q | No |
ClinGen TOPMed |
|
|
rs772945540 CA7554710 |
287 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA392380344 rs747771158 |
288 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA7554707 rs769628634 |
288 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA7554706 rs747771158 |
288 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA270423087 rs368742064 |
297 | D>N | No |
ClinGen ESP gnomAD |
|
|
CA392380187 rs1296902161 |
300 | T>A | No |
ClinGen gnomAD |
|
|
CA7554703 rs746458779 |
300 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1296902161 CA392380185 |
300 | T>P | No |
ClinGen gnomAD |
|
|
CA7554702 rs779457572 |
303 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392380123 rs1226811911 |
305 | K>N | No |
ClinGen TOPMed |
|
|
rs758925585 CA7554701 |
307 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs746425775 CA7554700 |
308 | M>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA392380074 rs1348632196 |
309 | V>M | No |
ClinGen TOPMed |
|
|
CA392380058 rs1384771347 |
310 | H>R | No |
ClinGen gnomAD |
|
|
rs779388053 CA7554699 |
311 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA392380028 rs757760566 |
312 | D>A | No |
ClinGen ExAC |
|
|
rs757760566 CA7554698 |
312 | D>G | No |
ClinGen ExAC |
|
|
CA392380019 rs947052592 |
313 | C>R | No |
ClinGen TOPMed |
|
|
rs377311498 CA7554697 COSM555256 |
313 | C>S | lung [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA270423045 rs947052592 COSM555256 |
313 | C>S | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs377311498 CA7554696 |
313 | C>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA392380001 rs1480255442 |
314 | T>I | No |
ClinGen gnomAD |
|
|
rs915539075 CA270423031 |
314 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA392379997 rs1186538777 |
315 | G>R | No |
ClinGen TOPMed |
|
|
CA392379897 rs1259413173 |
318 | V>I | No |
ClinGen gnomAD |
|
|
CA270422872 rs983002840 |
321 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA392379861 rs1290704769 |
323 | K>Q | No |
ClinGen gnomAD |
|
|
CA392379845 rs1398757795 |
325 | Q>P | No |
ClinGen gnomAD |
|
|
CA392379827 rs1375407865 |
327 | T>I | No |
ClinGen TOPMed |
|
|
rs1345012427 CA392379818 |
329 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
CA392379802 rs1303813409 |
331 | N>H | No |
ClinGen gnomAD |
|
|
CA7554674 rs755119621 |
333 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs767555993 CA7554675 |
333 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA392379782 rs1595705398 |
334 | Y>S | No |
ClinGen Ensembl |
|
|
rs751649716 CA7554673 |
335 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA392379767 rs1158749601 |
336 | R>S | No |
ClinGen TOPMed |
|
|
rs765088806 CA7554672 |
338 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
TCGA novel CA392379746 rs1410775447 |
339 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen TOPMed NCI-TCGA |
|
CA7554671 rs761765850 |
340 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763843865 CA7554669 |
342 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1595705370 CA392379722 |
344 | T>P | No |
ClinGen Ensembl |
|
|
rs1199509130 CA392379709 |
345 | D>E | No |
ClinGen gnomAD |
|
|
CA392379700 rs1173128425 |
347 | M>L | No |
ClinGen gnomAD |
|
| TCGA novel | 348 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392379624 rs1337480983 COSM962537 |
355 | R>* | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
| TCGA novel | 355 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1228488372 CA392379618 |
356 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1269637056 CA392379619 |
356 | R>W | No |
ClinGen gnomAD |
|
|
rs1367618872 CA392379605 COSM1708153 |
358 | R>C | Variant assessed as Somatic; 0.0 impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs370153946 COSM212234 CA7554653 |
358 | R>H | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA7554654 rs370153946 |
358 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA270419247 rs753711110 |
360 | V>I | No |
ClinGen gnomAD |
|
|
CA392379597 rs753711110 |
360 | V>L | No |
ClinGen gnomAD |
|
|
rs1334695932 CA392379579 |
362 | L>R | No |
ClinGen gnomAD |
|
|
rs1416070230 CA392379570 |
363 | W>C | No |
ClinGen gnomAD |
|
|
rs752551357 CA7554650 |
365 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767213026 CA7554649 |
366 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs773949912 CA7554647 |
367 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA7554648 rs143418383 COSM1323166 |
367 | R>W | ovary Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA gnomAD |
|
CA392379533 rs1238584722 |
370 | G>R | No |
ClinGen gnomAD |
|
|
CA392379517 rs1450426561 |
372 | K>R | No |
ClinGen gnomAD |
|
|
CA392379508 rs1436552773 |
373 | N>I | No |
ClinGen gnomAD |
|
|
rs867402027 CA270419164 |
375 | Q>* | No |
ClinGen Ensembl |
|
|
CA392379493 rs1360747727 |
375 | Q>H | No |
ClinGen gnomAD |
|
|
rs1163831886 CA392379465 |
380 | H>N | No |
ClinGen TOPMed |
|
|
rs371604874 CA7554642 |
380 | H>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
CA7554623 rs776953692 |
382 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554622 rs769044949 |
384 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1350044701 CA392379267 |
391 | L>P | No |
ClinGen gnomAD |
|
|
COSM107125 rs142738240 CA270414855 |
392 | V>I | skin [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA7554621 rs149133008 |
393 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA392379229 rs1595698650 |
395 | D>A | No |
ClinGen Ensembl |
|
|
CA7554619 rs368925670 |
395 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA270414814 rs368925670 |
395 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs374512383 CA7554617 |
399 | E>D | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1276530494 CA392379158 |
401 | P>L | No |
ClinGen TOPMed |
|
|
rs755956620 CA7554616 |
401 | P>S | No |
ClinGen ExAC |
|
|
rs1266939845 CA392379149 |
402 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 406 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1488931255 CA392379106 |
406 | L>I | No |
ClinGen TOPMed gnomAD |
|
|
CA7554612 rs755522711 |
408 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA392379074 rs1237634165 |
409 | V>L | No |
ClinGen gnomAD |
|
|
rs765892180 CA7554611 |
410 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA7554609 COSM3501965 rs749851294 |
412 | R>C | Variant assessed as Somatic; 0.0 impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7554608 COSM3401803 rs764847892 |
412 | R>H | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA7554610 rs749851294 |
412 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA270414694 rs1033527583 |
413 | L>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1302417310 CA392378977 |
415 | G>V | No |
ClinGen gnomAD |
|
|
CA7554586 rs377332777 |
416 | P>L | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1164726097 CA392378958 |
417 | N>S | No |
ClinGen TOPMed |
|
|
CA270414382 rs201932679 |
418 | C>* | No |
ClinGen Ensembl |
|
|
CA7554585 rs753359682 |
418 | C>Y | No |
ClinGen ExAC |
|
|
rs1437648926 CA392378932 |
419 | L>R | No |
ClinGen gnomAD |
|
|
CA7554584 rs764517146 |
421 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA392378914 rs1404563063 |
421 | E>G | No |
ClinGen gnomAD |
|
|
CA392378843 rs1386073952 |
427 | I>T | No |
ClinGen TOPMed |
|
|
CA392378828 rs1361013276 |
428 | A>G | No |
ClinGen gnomAD |
|
|
CA7554582 rs752957505 |
429 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767974283 CA7554581 |
430 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA7554579 rs774705171 |
431 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs771125639 CA7554578 |
432 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554577 rs201154324 |
432 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs773432904 CA7554576 |
433 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs746989923 CA7554574 |
437 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746989923 CA7554575 |
437 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1167720494 CA392378725 |
438 | A>P | No |
ClinGen gnomAD |
|
|
CA392378717 rs1356084782 |
438 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs771965245 CA7554572 |
439 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1231110532 CA392378700 |
440 | I>V | No |
ClinGen gnomAD |
|
|
CA270414313 rs913753206 |
442 | D>N | No |
ClinGen TOPMed |
|
|
rs1381094649 CA392378635 |
445 | I>V | No |
ClinGen gnomAD |
|
|
CA392378620 rs1483668327 |
446 | I>V | No |
ClinGen TOPMed |
|
|
CA7554570 rs778569907 |
447 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370055047 CA7554569 |
447 | R>H | Variant assessed as Somatic; 9.244e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA392378589 rs1296524634 |
448 | F>S | No |
ClinGen gnomAD |
|
| TCGA novel | 450 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392378545 rs1425683838 |
452 | S>C | No |
ClinGen TOPMed |
|
|
rs1595698277 CA392378553 |
452 | S>P | No |
ClinGen Ensembl |
|
|
rs1165748684 CA392378502 |
455 | T>I | No |
ClinGen TOPMed |
|
|
rs1383214831 CA392378497 |
456 | T>A | No |
ClinGen gnomAD |
|
|
rs1368175423 CA392378484 |
457 | R>W | No |
ClinGen TOPMed |
|
|
CA270414285 rs267604244 |
458 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA392378414 rs1595698246 |
461 | L>R | No |
ClinGen Ensembl |
|
|
CA392378389 rs1161453325 |
463 | D>E | No |
ClinGen TOPMed |
|
|
CA392378398 rs1457172240 |
463 | D>N | No |
ClinGen TOPMed |
|
|
rs1405409575 CA392378363 |
465 | N>S | No |
ClinGen Ensembl |
|
|
rs756593325 COSM3420395 CA7554566 |
468 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
COSM962536 rs753287349 CA7554565 |
468 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1595698226 CA392378315 |
469 | D>A | No |
ClinGen Ensembl |
|
|
CA270414278 rs80017867 |
470 | A>P | No |
ClinGen Ensembl |
|
|
rs751888297 CA7554562 |
473 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 474 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 475 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554560 rs763301734 |
476 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA392378201 rs1245896481 |
478 | H>Q | No |
ClinGen gnomAD |
|
|
CA7554559 rs773400327 |
479 | C>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554558 rs138250620 |
480 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760522154 CA7554557 |
481 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA7554555 rs771915811 |
484 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA392378134 rs1403410415 |
484 | S>N | No |
ClinGen gnomAD |
|
|
CA7554554 rs377513123 |
485 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs770521044 CA7554552 |
486 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554553 rs778709808 |
486 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA392378098 rs1182536179 |
487 | V>A | No |
ClinGen TOPMed |
|
|
rs1433567246 CA392378092 |
488 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA7554551 rs748990320 |
489 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA270414204 rs967530205 |
491 | I>V | No |
ClinGen Ensembl |
|
|
CA270414186 rs140622358 |
494 | I>M | No |
ClinGen ESP TOPMed |
|
|
CA7554549 rs145672878 RCV000885711 |
494 | I>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs748593895 CA7554548 |
495 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA392378000 rs1183705126 |
496 | G>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1183705126 CA392377998 |
496 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA7554547 rs781684311 |
496 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs146711827 CA7554546 |
498 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7554545 rs751916104 CA392377953 |
500 | W>R | No |
ClinGen ExAC gnomAD |
|
|
rs766896051 CA7554544 |
501 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758659075 CA7554543 |
501 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs960045100 CA270414152 |
504 | T>A | No |
ClinGen Ensembl |
|
|
CA7554542 rs750738762 |
504 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750738762 CA392377903 |
504 | T>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392377834 rs377547096 |
510 | S>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7554539 rs377547096 |
510 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767448591 CA7554538 |
510 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392377826 rs1366337205 |
510 | S>R | No |
ClinGen TOPMed |
|
|
rs1324400125 CA392377816 |
511 | G>E | No |
ClinGen gnomAD |
|
|
rs1228207644 CA392377822 |
511 | G>R | No |
ClinGen TOPMed |
|
|
CA7554536 rs565991426 |
512 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs565991426 CA7554537 |
512 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1392677343 CA392377782 |
514 | D>G | No |
ClinGen gnomAD |
|
|
rs770753940 CA7554535 |
517 | V>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 518 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA270414115 rs143383439 |
519 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371216664 CA7554533 |
519 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371216664 CA7554534 |
519 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7554532 rs143383439 |
519 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1476726378 CA392377690 |
522 | I>F | No |
ClinGen gnomAD |
|
|
rs1476726378 CA392377687 |
522 | I>L | No |
ClinGen gnomAD |
|
|
rs1482348453 CA392377665 |
523 | I>M | No |
ClinGen TOPMed |
|
|
rs1376546436 CA392377662 |
524 | K>E | No |
ClinGen gnomAD |
|
|
rs1199193701 CA392377607 |
527 | Q>H | No |
ClinGen gnomAD |
|
|
rs375190332 CA7554531 |
528 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs201567805 CA7554530 |
528 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 529 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA392377569 rs1449830286 |
531 | A>T | No |
ClinGen TOPMed |
|
|
CA392377556 rs201940833 |
532 | G>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7554528 rs201940833 |
532 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1434866027 CA392377538 |
533 | P>L | No |
ClinGen TOPMed |
|
|
CA392377534 rs1270525844 |
534 | M>V | No |
ClinGen gnomAD |
|
|
rs1040792124 CA270414087 |
535 | K>E | No |
ClinGen TOPMed |
|
|
CA392377513 rs1376551632 |
535 | K>R | No |
ClinGen TOPMed |
|
|
rs1201889717 CA392377505 |
536 | R>G | No |
ClinGen gnomAD |
|
|
CA392377499 rs1163685272 |
536 | R>T | No |
ClinGen TOPMed gnomAD |
|
|
CA270414081 rs267604243 |
537 | E>K | No |
ClinGen Ensembl |
|
|
CA392377472 rs1296625383 |
538 | N>S | No |
ClinGen Ensembl |
|
|
CA7554526 rs758889032 |
540 | L>F | No |
ClinGen ExAC |
|
|
rs1287519645 CA392377415 |
543 | E>G | No |
ClinGen TOPMed |
|
|
CA392377407 rs1324899475 |
544 | T>N | No |
ClinGen gnomAD |
|
|
CA392377391 rs1220298463 |
547 | D>G | No |
ClinGen TOPMed |
|
|
CA392377369 rs1322516637 |
550 | D>E | No |
ClinGen gnomAD |
|
|
rs1412667334 CA392377367 |
551 | D>N | No |
ClinGen gnomAD |
|
|
rs535558991 CA7554521 |
552 | C>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7554520 RCV000957275 rs16963486 VAR_048874 |
553 | F>L | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA270414035 rs980695027 |
555 | E>G | No |
ClinGen TOPMed |
|
| TCGA novel | 555 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1387879455 CA392377326 |
556 | E>D | No |
ClinGen gnomAD |
|
| TCGA novel | 558 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs775075139 CA7554519 |
559 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554518 rs766150542 |
561 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
rs949285541 CA270414018 |
562 | K>T | No |
ClinGen TOPMed |
|
|
CA7554515 rs769452104 |
563 | H>L | No |
ClinGen ExAC gnomAD |
|
|
CA392377287 rs1489368653 |
563 | H>N | No |
ClinGen TOPMed |
|
|
rs747782099 CA7554514 |
566 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs776173042 CA7554513 |
568 | F>Y | No |
ClinGen ExAC |
|
|
rs747503110 CA7554510 |
569 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392377219 rs1479138589 |
573 | L>S | No |
ClinGen TOPMed |
|
|
rs1160751226 CA392377213 |
574 | S>A | No |
ClinGen TOPMed |
|
|
rs780647095 CA7554509 |
574 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200537365 CA392377194 |
577 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA7554508 rs200537365 |
577 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs746193079 CA7554507 |
580 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554506 rs142718396 |
581 | T>K | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
CA7554504 rs142718396 |
581 | T>M | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
|
rs1365725424 CA392377163 |
582 | V>M | No |
ClinGen gnomAD |
|
|
CA270413950 rs745852282 |
583 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs777905414 CA7554501 |
583 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs777905414 COSM555261 CA7554502 |
583 | R>L | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA7554499 rs752788866 |
585 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs551690440 CA7554498 |
589 | S>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs750174191 CA7554496 |
591 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA270413899 rs992976509 |
592 | V>L | No |
ClinGen gnomAD |
|
|
rs764994958 CA7554495 |
593 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 594 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554492 rs768366611 |
596 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA7554494 rs761518898 |
596 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA7554493 rs375656460 |
596 | K>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1567443452 CA392377057 |
599 | P>S | No |
ClinGen Ensembl |
|
|
rs772656918 CA7554489 |
600 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 601 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA270413881 rs868554492 |
602 | A>V | No |
ClinGen Ensembl |
|
|
rs144259269 CA7554488 |
609 | S>F | No |
ClinGen ESP ExAC gnomAD |
|
|
rs779304695 CA7554487 |
610 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1567443419 CA392376989 |
610 | S>P | No |
ClinGen Ensembl |
|
|
CA7554486 rs771267720 |
611 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392376974 rs1595697640 |
612 | V>G | No |
ClinGen Ensembl |
|
| TCGA novel | 612 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749512582 CA7554485 |
613 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7554484 rs777801770 |
613 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA392376968 rs1251880635 |
614 | I>L | No |
ClinGen TOPMed |
|
|
CA7554483 rs756336000 |
616 | S>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs148195092 CA270413845 COSM109524 |
616 | S>F | skin [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs781276549 CA7554482 |
622 | M>K | No |
ClinGen ExAC gnomAD |
|
|
CA7554481 rs781276549 |
622 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs750423514 CA7554479 |
624 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA7554480 rs758313706 |
624 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1371947750 CA392376886 |
625 | L>P | No |
ClinGen gnomAD |
|
|
CA270413792 rs1029145791 |
626 | K>N | No |
ClinGen TOPMed |
|
|
CA392376876 rs1406264101 |
627 | K>E | No |
ClinGen TOPMed |
|
|
rs765063267 CA7554478 |
628 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 628 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 629 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7554477 rs761455765 |
629 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392376861 rs1415195728 |
629 | A>P | No |
ClinGen gnomAD |
|
|
rs1471890215 CA392376851 |
630 | F>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 632 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1432188802 CA392376836 |
632 | K>T | No |
ClinGen TOPMed |
|
| TCGA novel | 633 | L>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs760372380 CA7554476 |
634 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1182906549 CA392376823 |
634 | I>T | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1484167434 CA392376806 |
636 | F>L | No |
ClinGen gnomAD |
|
|
CA392376794 rs1349913804 |
638 | S>N | No |
ClinGen TOPMed |
|
|
rs773972874 CA7554475 |
639 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs760423840 CA7554474 |
640 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs760423840 CA392376780 |
640 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs2073440 CA7554471 VAR_033846 |
644 | E>D | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1362068856 CA392376745 |
645 | C>Y | No |
ClinGen gnomAD |
|
|
CA392376741 rs1158837084 |
646 | S>G | No |
ClinGen gnomAD |
|
|
CA7554470 rs774779143 |
646 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA392376483 rs1567443266 |
647 | S>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA7554468 rs749549807 COSM343223 |
648 | Q>* | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1350892062 CA392376469 |
649 | C>* | No |
ClinGen gnomAD |
|
|
CA392376473 rs1453524865 |
649 | C>R | No |
ClinGen gnomAD |
|
|
rs769958247 CA7554466 |
649 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs867191797 CA270413709 |
650 | G>E | No |
ClinGen Ensembl |
|
|
rs1456117858 CA392376457 |
651 | L>P | No |
ClinGen gnomAD |
|
|
rs372779026 CA7554463 |
652 | Q>H | No |
ClinGen ESP ExAC TOPMed |
|
|
CA7554462 rs747121866 |
653 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1190882769 CA392376437 |
655 | C>G | No |
ClinGen gnomAD |
|
|
CA392376435 rs1478470334 |
655 | C>S | No |
ClinGen gnomAD |
|
|
rs1247133962 CA392376429 |
656 | C>G | No |
ClinGen gnomAD |
|
|
rs778646925 CA7554461 |
657 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1463496709 CA392376418 |
658 | L>M | No |
ClinGen gnomAD |
|
|
CA7554460 rs757247674 |
660 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA392376396 rs1208842360 |
661 | M>T | No |
ClinGen gnomAD |
|
|
rs753525968 CA7554459 |
662 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA392376391 rs1318239474 |
662 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA392376379 rs1218350666 |
663 | V>Y | No |
ClinGen gnomAD |
No associated diseases with P19113
1 regional properties for P19113
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| binding_site | Pyridoxal-phosphate binding site | 298 - 319 | IPR021115 |
Functions
| Description | ||
|---|---|---|
| EC Number | 4.1.1.22 | Carboxy-lyases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
2 GO annotations of cellular component
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. |
| histidine decarboxylase activity | Catalysis of the reaction: L-histidine = histamine + CO2. |
| pyridoxal phosphate binding | Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| catecholamine biosynthetic process | The chemical reactions and pathways resulting in the formation of any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine. |
| histamine biosynthetic process | The chemical reactions and pathways resulting in the formation of histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans. |
| histidine catabolic process | The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. |
| histidine metabolic process | The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. |
7 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q5EA83 | HDC | Histidine decarboxylase | Bos taurus (Bovine) | PR |
| P18486 | amd | 3,4-dihydroxyphenylacetaldehyde synthase | Drosophila melanogaster (Fruit fly) | PR |
| P05031 | Ddc | Aromatic-L-amino-acid decarboxylase | Drosophila melanogaster (Fruit fly) | PR |
| P23738 | Hdc | Histidine decarboxylase | Mus musculus (Mouse) | PR |
| P16453 | Hdc | Histidine decarboxylase | Rattus norvegicus (Rat) | PR |
| Q95ZS2 | tdc-1 | Tyrosine decarboxylase | Caenorhabditis elegans | PR |
| Q9M0G4 | TYRDC | Tyrosine decarboxylase 2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MMEPEEYRER | GREMVDYICQ | YLSTVRERRV | TPDVQPGYLR | AQLPESAPED | PDSWDSIFGD |
| 70 | 80 | 90 | 100 | 110 | 120 |
| IERIIMPGVV | HWQSPHMHAY | YPALTSWPSL | LGDMLADAIN | CLGFTWASSP | ACTELEMNVM |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DWLAKMLGLP | EHFLHHHPSS | QGGGVLQSTV | SESTLIALLA | ARKNKILEMK | TSEPDADESC |
| 190 | 200 | 210 | 220 | 230 | 240 |
| LNARLVAYAS | DQAHSSVEKA | GLISLVKMKF | LPVDDNFSLR | GEALQKAIEE | DKQRGLVPVF |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VCATLGTTGV | CAFDCLSELG | PICAREGLWL | HIDAAYAGTA | FLCPEFRGFL | KGIEYADSFT |
| 310 | 320 | 330 | 340 | 350 | 360 |
| FNPSKWMMVH | FDCTGFWVKD | KYKLQQTFSV | NPIYLRHANS | GVATDFMHWQ | IPLSRRFRSV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| KLWFVIRSFG | VKNLQAHVRH | GTEMAKYFES | LVRNDPSFEI | PAKRHLGLVV | FRLKGPNCLT |
| 430 | 440 | 450 | 460 | 470 | 480 |
| ENVLKEIAKA | GRLFLIPATI | QDKLIIRFTV | TSQFTTRDDI | LRDWNLIRDA | ATLILSQHCT |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SQPSPRVGNL | ISQIRGARAW | ACGTSLQSVS | GAGDDPVQAR | KIIKQPQRVG | AGPMKRENGL |
| 550 | 560 | 570 | 580 | 590 | 600 |
| HLETLLDPVD | DCFSEEAPDA | TKHKLSSFLF | SYLSVQTKKK | TVRSLSCNSV | PVSAQKPLPT |
| 610 | 620 | 630 | 640 | 650 | 660 |
| EASVKNGGSS | RVRIFSRFPE | DMMMLKKSAF | KKLIKFYSVP | SFPECSSQCG | LQLPCCPLQA |
| MV |