P62195
Gene name |
PSMC5 (SUG1) |
Protein name |
26S proteasome regulatory subunit 8 |
Names |
26S proteasome AAA-ATPase subunit RPT6, Proteasome 26S subunit ATPase 5, Proteasome subunit p45, Thyroid hormone receptor-interacting protein 1, TRIP1, p45/SUG |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5705 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
59 structures for P62195
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2KRK | NMR | - | A | 320-395 | PDB |
| 3KW6 | X-ray | 210 A | A | 318-395 | PDB |
| 5GJQ | EM | 450 A | J | 1-406 | PDB |
| 5GJR | EM | 350 A | J/x | 1-406 | PDB |
| 5L4G | EM | 402 A | J | 1-406 | PDB |
| 5LN3 | EM | 680 A | J | 1-406 | PDB |
| 5M32 | EM | 380 A | h | 38-392 | PDB |
| 5T0C | EM | 380 A | AC/BC | 1-406 | PDB |
| 5T0G | EM | 440 A | C | 9-406 | PDB |
| 5T0H | EM | 680 A | C | 9-406 | PDB |
| 5T0I | EM | 800 A | C | 9-406 | PDB |
| 5T0J | EM | 800 A | C | 9-406 | PDB |
| 5VFP | EM | 420 A | C | 11-402 | PDB |
| 5VFQ | EM | 420 A | C | 11-402 | PDB |
| 5VFR | EM | 490 A | C | 11-402 | PDB |
| 5VFS | EM | 360 A | C | 9-397 | PDB |
| 5VFT | EM | 700 A | C | 11-394 | PDB |
| 5VFU | EM | 580 A | C | 11-394 | PDB |
| 5VGZ | EM | 370 A | C | 11-128 | PDB |
| 5VHF | EM | 570 A | C | 11-395 | PDB |
| 5VHH | EM | 610 A | C | 11-395 | PDB |
| 5VHI | EM | 680 A | C | 11-395 | PDB |
| 5VHJ | EM | 850 A | C | 130-395 | PDB |
| 5VHM | EM | 830 A | C | 130-395 | PDB |
| 5VHN | EM | 730 A | C | 130-395 | PDB |
| 5VHO | EM | 830 A | C | 130-395 | PDB |
| 5VHP | EM | 790 A | C | 130-395 | PDB |
| 5VHQ | EM | 890 A | C | 130-395 | PDB |
| 5VHR | EM | 770 A | C | 130-395 | PDB |
| 5VHS | EM | 880 A | C | 11-395 | PDB |
| 6MSB | EM | 300 A | C | 9-406 | PDB |
| 6MSD | EM | 320 A | C | 9-406 | PDB |
| 6MSG | EM | 350 A | C | 9-406 | PDB |
| 6MSH | EM | 360 A | C | 9-406 | PDB |
| 6MSJ | EM | 330 A | C | 9-406 | PDB |
| 6MSK | EM | 320 A | C | 9-406 | PDB |
| 6WJD | EM | 480 A | C | 9-406 | PDB |
| 6WJN | EM | 570 A | C | 11-402 | PDB |
| 7QXN | EM | 370 A | C | 9-406 | PDB |
| 7QXP | EM | 360 A | C | 9-406 | PDB |
| 7QXW | EM | 410 A | C | 9-406 | PDB |
| 7QY7 | EM | 470 A | C | 9-402 | PDB |
| 7QYA | EM | 480 A | C | 9-406 | PDB |
| 7QYB | EM | 410 A | C | 9-406 | PDB |
| 7W37 | EM | 300 A | C | 9-406 | PDB |
| 7W38 | EM | 310 A | C | 9-406 | PDB |
| 7W39 | EM | 320 A | C | 9-406 | PDB |
| 7W3A | EM | 350 A | C | 9-406 | PDB |
| 7W3B | EM | 360 A | C | 9-406 | PDB |
| 7W3C | EM | 340 A | C | 9-406 | PDB |
| 7W3F | EM | 330 A | C | 9-406 | PDB |
| 7W3G | EM | 320 A | C | 9-406 | PDB |
| 7W3H | EM | 320 A | C | 9-406 | PDB |
| 7W3I | EM | 350 A | C | 9-406 | PDB |
| 7W3J | EM | 350 A | C | 9-406 | PDB |
| 7W3K | EM | 360 A | C | 9-406 | PDB |
| 7W3M | EM | 350 A | C | 9-406 | PDB |
| 8CVT | EM | 300 A | C | 1-406 | PDB |
| AF-P62195-F1 | Predicted | AlphaFoldDB |
161 variants for P62195
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs967715869 CA400592604 |
2 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs967715869 CA400592606 |
2 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA292946147 rs537538880 |
2 | A>P | No |
ClinGen 1000Genomes TOPMed |
|
|
CA292946149 rs967715869 |
2 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1483251327 CA400592614 |
3 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1221743172 CA400592637 |
5 | G>* | No |
ClinGen gnomAD |
|
|
rs926239770 CA292946155 |
6 | P>A | No |
ClinGen TOPMed |
|
|
rs984953757 CA292946158 |
6 | P>L | No |
ClinGen Ensembl |
|
|
CA400592666 rs1223441527 |
7 | E>G | No |
ClinGen Ensembl |
|
|
rs937504689 CA292946161 |
8 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1391452246 CA400592791 |
9 | M>I | No |
ClinGen TOPMed |
|
|
rs138422324 CA400592866 |
15 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs138422324 CA8705823 |
15 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1415435145 CA400592898 |
17 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| TCGA novel | 18 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1374422838 CA400592951 |
21 | R>H | No |
ClinGen TOPMed |
|
|
rs1216127085 CA400593009 |
25 | L>P | No |
ClinGen TOPMed |
|
|
CA8705828 rs200165127 |
28 | I>T | No |
ClinGen 1000Genomes ExAC |
|
| TCGA novel | 31 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1301205613 CA400593231 |
33 | L>M | No |
ClinGen gnomAD |
|
|
CA400593253 rs1426113190 |
36 | N>S | No |
ClinGen gnomAD |
|
|
rs1008437886 CA292947266 |
38 | K>E | No |
ClinGen TOPMed |
|
|
CA400593271 rs1280161518 |
38 | K>N | No |
ClinGen gnomAD |
|
|
CA400593273 rs1375835658 |
39 | S>G | No |
ClinGen gnomAD |
|
|
rs1222245691 CA400593276 |
39 | S>T | No |
ClinGen gnomAD |
|
|
rs1360598038 CA400593285 |
40 | Q>P | No |
ClinGen gnomAD |
|
|
rs1019690643 CA292947270 |
42 | L>F | No |
ClinGen TOPMed |
|
|
CA400593304 rs750251182 |
43 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8705845 rs750251182 |
43 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400593301 rs1231484066 |
43 | R>W | No |
ClinGen TOPMed |
|
|
rs752951324 CA292947301 |
51 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs567104866 CA8705847 |
52 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1228867189 CA400593407 COSM263142 |
57 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs758226061 CA8705865 |
60 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
| VAR_035901 | 60 | R>Q | a colorectal cancer sample; somatic mutation [UniProt] | No | UniProt |
|
CA8705867 rs751301920 |
69 | Q>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 70 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400593570 rs1233105704 |
71 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| TCGA novel | 74 | G>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400593630 rs374448804 |
75 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs559656206 CA8705875 |
77 | V>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA400593645 rs1471109338 |
77 | V>I | No |
ClinGen gnomAD |
|
|
CA400593682 rs1235842209 |
80 | M>T | No |
ClinGen Ensembl |
|
|
rs1567757313 CA400593769 |
86 | L>* | No |
ClinGen Ensembl |
|
|
CA8705894 rs746291014 |
91 | P>S | No |
ClinGen ExAC |
|
|
rs772459737 CA8705895 |
92 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA8705896 rs775898082 |
96 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1282032143 CA400593959 |
97 | V>I | No |
ClinGen gnomAD |
|
|
CA8705898 rs768992462 |
99 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs776701733 CA8705899 |
101 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA400594015 rs1489822994 |
103 | I>T | No |
ClinGen gnomAD |
|
|
rs1293865113 CA400594009 |
103 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA400594025 rs1199352033 |
104 | D>H | No |
ClinGen TOPMed |
|
| TCGA novel | 104 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1220383102 CA400594041 |
105 | I>V | No |
ClinGen gnomAD |
|
|
CA400594059 rs1485923130 |
106 | N>S | No |
ClinGen TOPMed |
|
|
rs761818702 CA8705902 |
107 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1443382148 CA400594112 |
108 | V>M | No |
ClinGen gnomAD |
|
|
CA292948159 rs759360446 |
111 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs747275507 COSM252742 CA8705918 |
113 | R>W | ovary [Cosmic] | No |
ClinGen cosmic curated ExAC |
| TCGA novel | 121 | Y>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400594290 rs1249341788 |
122 | T>N | No |
ClinGen TOPMed |
|
|
rs906549571 CA292948209 |
135 | V>M | No |
ClinGen TOPMed |
|
| TCGA novel | 136 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292948210 rs1802130 |
138 | M>K | No |
ClinGen Ensembl |
|
|
CA292949947 rs201173463 |
139 | M>T | No |
ClinGen 1000Genomes |
|
|
rs146976250 CA8705927 |
145 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs200364182 CA292949973 |
146 | S>L | No |
ClinGen 1000Genomes |
|
| TCGA novel | 146 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 149 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1460260421 CA400594585 |
151 | I>T | No |
ClinGen gnomAD |
|
| TCGA novel | 152 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1228067269 CA400594613 |
156 | K>Q | No |
ClinGen TOPMed |
|
|
rs764184588 CA8705928 |
157 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs202169906 CA292949985 |
159 | K>E | No |
ClinGen 1000Genomes |
|
|
COSM982720 CA400594686 rs1422249342 |
166 | E>K | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA400594755 rs1326856075 COSM1385198 |
176 | E>K | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs756629902 CA8705959 |
189 | Y>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292950356 rs1007714240 |
192 | P>L | No |
ClinGen TOPMed |
|
|
CA8705961 rs749452987 |
207 | T>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 208 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs143717913 CA292950375 |
213 | R>C | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1248775209 CA400595104 |
217 | S>F | No |
ClinGen gnomAD |
|
|
rs968719 CA400595115 |
219 | L>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 221 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400595141 rs1227104699 |
223 | F>I | No |
ClinGen TOPMed |
|
|
rs769914700 CA8705968 |
225 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1200029702 CA400595193 |
229 | R>G | No |
ClinGen gnomAD |
|
|
CA400595195 rs1340432915 |
229 | R>K | No |
ClinGen gnomAD |
|
|
CA400595281 rs1435542983 |
241 | H>R | No |
ClinGen TOPMed |
|
|
CA8705996 rs148086513 |
242 | A>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA400595310 rs1388399745 |
246 | I>V | No |
ClinGen TOPMed |
|
|
CA292950608 rs1802131 |
249 | D>V | No |
ClinGen Ensembl |
|
|
rs1277612217 CA400595370 |
254 | I>V | No |
ClinGen gnomAD |
|
|
rs750595679 CA8706001 |
257 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA8706004 rs781522827 |
258 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292950658 rs781522827 |
258 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8706003 rs11543211 VAR_048119 |
258 | R>W | No |
ClinGen UniProt ExAC dbSNP gnomAD |
|
|
rs1481519266 CA400595396 |
259 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1171232854 CA400595405 |
260 | E>D | No |
ClinGen gnomAD |
|
|
rs80345213 CA8706006 |
260 | E>G | No |
ClinGen ExAC |
|
|
CA400595400 rs1598355159 |
260 | E>Q | No |
ClinGen Ensembl |
|
|
rs1401921311 CA400595415 |
262 | G>C | No |
ClinGen gnomAD |
|
|
CA400595413 rs1401921311 |
262 | G>S | No |
ClinGen gnomAD |
|
|
CA400595434 rs1359115042 |
265 | G>E | No |
ClinGen gnomAD |
|
|
CA400595440 rs1598355189 |
266 | D>G | No |
ClinGen Ensembl |
|
|
CA292950692 rs1050708 |
266 | D>N | No |
ClinGen Ensembl |
|
|
rs897846834 CA292950702 |
271 | R>C | No |
ClinGen TOPMed |
|
|
CA8706009 rs778907291 |
272 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400595488 rs1351123653 |
273 | M>T | No |
ClinGen gnomAD |
|
|
rs1283812429 CA400595523 |
278 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1216024518 CA400595534 |
279 | Q>H | No |
ClinGen gnomAD |
|
|
CA400595549 rs1197014415 |
282 | G>S | No |
ClinGen gnomAD |
|
|
CA8706015 rs776860314 |
288 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA400595676 rs1453376752 |
291 | V>L | No |
ClinGen gnomAD |
|
| TCGA novel | 293 | M>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400595782 rs1483958329 |
298 | I>M | No |
ClinGen TOPMed |
|
| TCGA novel | 299 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292950918 rs1050740 |
300 | I>M | No |
ClinGen TOPMed |
|
|
rs1319798057 CA400595813 |
301 | L>V | No |
ClinGen gnomAD |
|
|
CA8706040 COSM982723 rs374419165 |
303 | S>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1340376039 CA400595844 |
304 | A>T | No |
ClinGen gnomAD |
|
|
CA8706042 rs767692177 |
307 | R>H | No |
ClinGen ExAC |
|
|
CA400595961 rs1349754006 |
320 | P>H | No |
ClinGen TOPMed |
|
| TCGA novel | 321 | N>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8706045 rs756249254 |
321 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 322 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754834783 CA8706071 COSM1290742 |
330 | K>N | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
| TCGA novel | 331 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 331 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 333 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1422223376 CA400596064 |
334 | R>Q | No |
ClinGen gnomAD |
|
|
CA400596063 rs1162334738 |
334 | R>W | No |
ClinGen TOPMed |
|
|
CA400596104 rs1213870591 |
340 | R>Q | No |
ClinGen gnomAD |
|
|
rs780778918 CA8706072 |
340 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1391574835 CA400596110 |
341 | G>E | No |
ClinGen TOPMed |
|
|
CA400596120 rs1464523684 |
343 | N>H | No |
ClinGen gnomAD |
|
|
CA400596149 rs1446133552 |
347 | I>V | No |
ClinGen TOPMed |
|
|
CA292951147 rs770501716 |
349 | E>D | No |
ClinGen Ensembl |
|
|
rs1267771318 CA400596182 |
351 | M>I | No |
ClinGen TOPMed |
|
|
CA400596185 rs1422535071 |
352 | P>S | No |
ClinGen gnomAD |
|
|
CA8706077 rs543372685 |
354 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1379563051 CA400596302 |
362 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1309185813 CA400596386 |
368 | M>T | No |
ClinGen gnomAD |
|
|
CA400596411 rs1320796271 |
372 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA400596410 rs1320796271 |
372 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA400596416 rs1372995875 |
373 | E>Q | No |
ClinGen TOPMed |
|
|
rs780412308 CA400596425 |
374 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA8706101 rs780412308 |
374 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 374 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1259826806 CA400596442 |
377 | H>R | No |
ClinGen gnomAD |
|
|
rs747542979 CA8706122 |
390 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA8706124 rs781264605 |
391 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA8706123 rs755426300 |
391 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs748162252 CA8706125 |
392 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs773296559 CA8706127 |
394 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs146352219 CA8706128 |
395 | S>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 397 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1275288233 CA400596604 |
398 | N>D | No |
ClinGen gnomAD |
|
|
rs771733803 CA8706129 |
399 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA400596611 rs1404956738 |
399 | M>V | No |
ClinGen TOPMed |
No associated diseases with P62195
5 regional properties for P62195
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | AAA+ ATPase domain | 182 - 321 | IPR003593 |
| domain | ATPase, AAA-type, core | 186 - 318 | IPR003959 |
| conserved_site | ATPase, AAA-type, conserved site | 289 - 307 | IPR003960 |
| domain | Proteasomal ATPase OB C-terminal domain | 73 - 128 | IPR032501 |
| domain | AAA ATPase, AAA+ lid domain | 342 - 384 | IPR041569 |
15 GO annotations of cellular component
| Name | Definition |
|---|---|
| blood microparticle | A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytoplasmic vesicle | A vesicle found in the cytoplasm of a cell. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| cytosolic proteasome complex | A proteasome complex found in the cytosol of a cell. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| inclusion body | A discrete intracellular part formed of aggregated molecules such as proteins or other biopolymers. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nuclear proteasome complex | A proteasome found in the nucleus of a cell. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| postsynapse | The part of a synapse that is part of the post-synaptic cell. |
| proteasome accessory complex | A protein complex, that caps one or both ends of the proteasome core complex and regulates entry into, or exit from, the proteasome core complex. |
| proteasome complex | A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. |
| proteasome regulatory particle, base subcomplex | The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. |
8 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| DNA-binding transcription factor binding | Binding to a DNA-binding transcription factor, a protein that interacts with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. |
| general transcription initiation factor binding | Binding to a general transcription initiation factor, a protein that contributes to transcription start site selection and transcription initiation. |
| proteasome-activating activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
| TBP-class protein binding | Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). |
| thyrotropin-releasing hormone receptor binding | Binding to a receptor for thyrotropin-releasing hormone, a tripeptide hormone that is produced by the hypothalamus and stimulates the release of thyroid-stimulating hormone (TSH) and prolactin by the anterior pituitary. |
| transcription factor binding | Binding to a transcription factor, a protein required to initiate or regulate transcription. |
8 GO annotations of biological process
| Name | Definition |
|---|---|
| modulation of chemical synaptic transmission | Any process that modulates the frequency or amplitude of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. Amplitude, in this case, refers to the change in postsynaptic membrane potential due to a single instance of synaptic transmission. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| negative regulation of programmed cell death | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. |
| positive regulation of DNA-templated transcription | Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription. |
| positive regulation of inclusion body assembly | Any process that increases the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body. |
| positive regulation of proteasomal protein catabolic process | Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. |
| proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
10 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q01939 | RPT6 | 26S proteasome regulatory subunit 8 homolog | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P62194 | PSMC5 | 26S proteasome regulatory subunit 8 | Bos taurus (Bovine) | PR |
| O18413 | Rpt6 | 26S proteasome regulatory subunit 8 | Drosophila melanogaster (Fruit fly) | PR |
| P62333 | PSMC6 | 26S proteasome regulatory subunit 10B | Homo sapiens (Human) | PR |
| P43686 | PSMC4 | 26S proteasome regulatory subunit 6B | Homo sapiens (Human) | PR |
| P17980 | PSMC3 | 26S proteasome regulatory subunit 6A | Homo sapiens (Human) | PR |
| P35998 | PSMC2 | 26S proteasome regulatory subunit 7 | Homo sapiens (Human) | PR |
| P62196 | Psmc5 | 26S proteasome regulatory subunit 8 | Mus musculus (Mouse) | PR |
| P62197 | PSMC5 | 26S proteasome regulatory subunit 8 | Sus scrofa (Pig) | PR |
| P62198 | Psmc5 | 26S proteasome regulatory subunit 8 | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MALDGPEQME | LEEGKAGSGL | RQYYLSKIEE | LQLIVNDKSQ | NLRRLQAQRN | ELNAKVRLLR |
| 70 | 80 | 90 | 100 | 110 | 120 |
| EELQLLQEQG | SYVGEVVRAM | DKKKVLVKVH | PEGKFVVDVD | KNIDINDVTP | NCRVALRNDS |
| 130 | 140 | 150 | 160 | 170 | 180 |
| YTLHKILPNK | VDPLVSLMMV | EKVPDSTYEM | IGGLDKQIKE | IKEVIELPVK | HPELFEALGI |
| 190 | 200 | 210 | 220 | 230 | 240 |
| AQPKGVLLYG | PPGTGKTLLA | RAVAHHTDCT | FIRVSGSELV | QKFIGEGARM | VRELFVMARE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| HAPSIIFMDE | IDSIGSSRLE | GGSGGDSEVQ | RTMLELLNQL | DGFEATKNIK | VIMATNRIDI |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LDSALLRPGR | IDRKIEFPPP | NEEARLDILK | IHSRKMNLTR | GINLRKIAEL | MPGASGAEVK |
| 370 | 380 | 390 | 400 | ||
| GVCTEAGMYA | LRERRVHVTQ | EDFEMAVAKV | MQKDSEKNMS | IKKLWK |