P35998
Gene name |
PSMC2 (MSS1) |
Protein name |
26S proteasome regulatory subunit 7 |
Names |
26S proteasome AAA-ATPase subunit RPT1, Proteasome 26S subunit ATPase 2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5701 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
60 structures for P35998
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 5GJQ | EM | 450 A | H | 1-433 | PDB |
| 5GJR | EM | 350 A | H/v | 1-433 | PDB |
| 5L4G | EM | 402 A | H | 1-433 | PDB |
| 5LN3 | EM | 680 A | H | 1-433 | PDB |
| 5M32 | EM | 380 A | c | 1-433 | PDB |
| 5T0C | EM | 380 A | AA/BA | 1-433 | PDB |
| 5T0G | EM | 440 A | A | 1-433 | PDB |
| 5T0H | EM | 680 A | A | 1-433 | PDB |
| 5T0I | EM | 800 A | A | 1-433 | PDB |
| 5T0J | EM | 800 A | A | 1-433 | PDB |
| 5VFP | EM | 420 A | A | 35-433 | PDB |
| 5VFQ | EM | 420 A | A | 35-433 | PDB |
| 5VFR | EM | 490 A | A | 35-433 | PDB |
| 5VFS | EM | 360 A | A | 1-433 | PDB |
| 5VFT | EM | 700 A | A | 73-433 | PDB |
| 5VFU | EM | 580 A | A | 73-433 | PDB |
| 5VGZ | EM | 370 A | A | 73-155 | PDB |
| 5VHF | EM | 570 A | A | 73-424 | PDB |
| 5VHH | EM | 610 A | A | 73-424 | PDB |
| 5VHI | EM | 680 A | A | 73-424 | PDB |
| 5VHJ | EM | 850 A | A | 180-424 | PDB |
| 5VHM | EM | 830 A | A | 159-424 | PDB |
| 5VHN | EM | 730 A | A | 159-424 | PDB |
| 5VHO | EM | 830 A | A | 158-424 | PDB |
| 5VHP | EM | 790 A | A | 159-424 | PDB |
| 5VHQ | EM | 890 A | A | 159-424 | PDB |
| 5VHR | EM | 770 A | A | 159-424 | PDB |
| 5VHS | EM | 880 A | A | 73-424 | PDB |
| 6MSB | EM | 300 A | A | 1-433 | PDB |
| 6MSD | EM | 320 A | A | 1-433 | PDB |
| 6MSE | EM | 330 A | M/m | 94-136 | PDB |
| 6MSG | EM | 350 A | A | 1-433 | PDB |
| 6MSH | EM | 360 A | A | 1-433 | PDB |
| 6MSJ | EM | 330 A | A | 1-433 | PDB |
| 6MSK | EM | 320 A | A | 1-433 | PDB |
| 6WJD | EM | 480 A | A | 1-433 | PDB |
| 6WJN | EM | 570 A | A | 35-433 | PDB |
| 7QXN | EM | 370 A | A | 1-433 | PDB |
| 7QXP | EM | 360 A | A | 1-433 | PDB |
| 7QXU | EM | 430 A | A | 1-433 | PDB |
| 7QXW | EM | 410 A | A | 1-433 | PDB |
| 7QXX | EM | 440 A | A | 1-433 | PDB |
| 7QY7 | EM | 470 A | A | 1-433 | PDB |
| 7QYA | EM | 480 A | A | 1-433 | PDB |
| 7QYB | EM | 410 A | A | 1-433 | PDB |
| 7W37 | EM | 300 A | A | 1-433 | PDB |
| 7W38 | EM | 310 A | A | 1-433 | PDB |
| 7W39 | EM | 320 A | A | 1-433 | PDB |
| 7W3A | EM | 350 A | A | 1-433 | PDB |
| 7W3B | EM | 360 A | A | 1-433 | PDB |
| 7W3C | EM | 340 A | A | 1-433 | PDB |
| 7W3F | EM | 330 A | A | 1-433 | PDB |
| 7W3G | EM | 320 A | A | 1-433 | PDB |
| 7W3H | EM | 320 A | A | 1-433 | PDB |
| 7W3I | EM | 350 A | A | 1-433 | PDB |
| 7W3J | EM | 350 A | A | 1-433 | PDB |
| 7W3K | EM | 360 A | A | 1-433 | PDB |
| 7W3M | EM | 350 A | A | 1-433 | PDB |
| 8CVT | EM | 300 A | A | 1-433 | PDB |
| AF-P35998-F1 | Predicted | AlphaFoldDB |
162 variants for P35998
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1464465948 CA368761530 |
2 | P>L | No |
ClinGen gnomAD |
|
|
CA4418897 rs751112880 |
2 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA368761540 rs1255101451 |
3 | D>A | No |
ClinGen gnomAD |
|
|
rs754678714 CA4418898 |
3 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA368761535 rs754678714 |
3 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA4418900 rs202147098 |
5 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs61738529 CA163916491 |
6 | G>S | No |
ClinGen Ensembl |
|
|
rs554292187 CA4418902 |
7 | A>S | Variant assessed as Somatic; 0.0006468 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs554292187 CA368761602 |
7 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1206757733 CA368761619 |
8 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA4418904 rs772261210 |
9 | Q>K | No |
ClinGen ExAC |
|
|
rs780482695 CA4418905 |
10 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs981661558 CA163916566 |
10 | R>L | No |
ClinGen TOPMed |
|
|
rs768955364 CA4418907 |
11 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA4418906 rs747152993 |
11 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs558519530 CA4418908 |
12 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs201035586 CA163916598 |
13 | K>E | No |
ClinGen 1000Genomes |
|
|
rs1230656057 CA368761731 |
14 | E>A | No |
ClinGen gnomAD |
|
|
rs1365849062 CA368761728 |
14 | E>Q | No |
ClinGen gnomAD |
|
|
rs1329129617 CA368761779 |
16 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs943377031 CA163916606 |
16 | E>G | No |
ClinGen TOPMed |
|
|
rs773066092 CA4418911 |
17 | K>T | No |
ClinGen ExAC gnomAD |
|
|
rs751398461 CA4418914 |
18 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761947375 CA4418913 |
18 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs767172349 CA4418916 |
19 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs759287626 CA4418915 |
19 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA368761852 rs1184109527 |
20 | K>R | No |
ClinGen gnomAD |
|
|
CA368761863 rs1472260592 |
21 | P>T | No |
ClinGen gnomAD |
|
|
CA368736056 rs1462921430 |
27 | E>D | No |
ClinGen TOPMed |
|
|
rs776196601 CA4418957 |
31 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA4418959 rs145606402 |
32 | L>F | No |
ClinGen ESP ExAC gnomAD |
|
|
CA4418958 rs761373728 |
32 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA163852538 rs918541706 |
35 | T>S | No |
ClinGen TOPMed |
|
|
CA4418979 rs779920178 |
38 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA4418980 rs753258999 |
39 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA163853285 rs886803788 |
40 | T>A | No |
ClinGen gnomAD |
|
|
CA368736230 rs376614496 |
40 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA368736226 rs886803788 |
40 | T>S | No |
ClinGen gnomAD |
|
|
rs376614496 CA4418981 |
40 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1390320032 CA368736300 |
45 | I>N | No |
ClinGen gnomAD |
|
|
CA163853301 rs11545648 |
46 | K>M | No |
ClinGen Ensembl |
|
| TCGA novel | 46 | K>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA4418983 CA163853315 rs369823547 |
47 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1301108328 CA368736338 |
48 | V>I | No |
ClinGen gnomAD |
|
|
rs1352254476 CA368736416 |
52 | I>F | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 53 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757447647 CA4418984 |
53 | Q>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 67 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA163853886 rs878927065 |
71 | G>R | No |
ClinGen Ensembl |
|
|
rs758549858 CA4419005 |
71 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA368737020 rs1484550739 |
74 | P>L | No |
ClinGen gnomAD |
|
|
rs1563486194 CA368737014 |
74 | P>S | No |
ClinGen Ensembl |
|
|
rs751491617 CA4419007 |
75 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs781229277 CA4419009 |
79 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA368737100 rs1190707141 |
79 | D>V | No |
ClinGen gnomAD |
|
|
rs1335507977 CA368737238 |
86 | T>I | No |
ClinGen TOPMed |
|
|
rs74998067 CA163853917 |
90 | E>D | No |
ClinGen gnomAD |
|
| TCGA novel | 100 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA4419026 rs767340599 |
100 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs975171821 CA163859514 |
101 | I>V | No |
ClinGen Ensembl |
|
|
rs765537959 CA4419027 |
103 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA163859544 rs200658637 |
105 | D>N | No |
ClinGen 1000Genomes gnomAD |
|
|
rs200658637 CA368739979 |
105 | D>Y | No |
ClinGen 1000Genomes gnomAD |
|
|
CA4419028 rs755796502 |
106 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 114 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA163859590 rs201653763 |
116 | K>N | No |
ClinGen 1000Genomes |
|
|
CA163859596 rs200242883 |
121 | F>L | No |
ClinGen 1000Genomes |
|
|
rs11545647 CA163859604 |
123 | V>A | No |
ClinGen Ensembl |
|
|
CA368740369 rs1446512014 |
128 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
CA368740517 rs1248705494 |
134 | I>M | No |
ClinGen gnomAD |
|
|
rs745351399 CA4419033 |
138 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA368740567 rs1191610561 |
138 | M>K | No |
ClinGen gnomAD |
|
|
rs771671019 CA4419034 |
139 | R>G | No |
ClinGen ExAC gnomAD |
|
| rs770391778 | 141 | G>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 143 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA4419060 rs771485377 |
149 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1444793640 CA368740822 |
151 | I>M | No |
ClinGen TOPMed |
|
|
CA368740848 rs1245452605 |
154 | P>H | No |
ClinGen gnomAD |
|
|
CA368740870 rs1356678980 |
155 | P>L | No |
ClinGen gnomAD |
|
|
rs1289874307 CA368740858 |
155 | P>S | No |
ClinGen gnomAD |
|
|
CA163860256 rs775120634 |
156 | K>R | No |
ClinGen TOPMed |
|
| TCGA novel | 159 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1463144110 CA368740952 |
160 | T>I | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 170 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs969789113 CA163861038 |
178 | G>D | No |
ClinGen Ensembl |
|
|
CA4419095 rs775626147 |
181 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA4419096 rs760735336 |
188 | R>Q | No |
ClinGen ExAC TOPMed |
|
|
rs1470605759 CA368742497 |
191 | V>A | No |
ClinGen TOPMed |
|
|
rs768795269 CA4419097 |
193 | T>I | No |
ClinGen ExAC |
|
|
CA368742580 rs1365791970 |
196 | L>P | No |
ClinGen TOPMed |
|
|
CA368742595 rs1174791601 |
197 | H>L | No |
ClinGen gnomAD |
|
|
CA4419111 rs374959956 |
200 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1174917757 CA368742720 |
200 | R>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 201 | F>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs199759890 CA163861840 |
206 | I>F | No |
ClinGen Ensembl |
|
|
CA368742766 rs1358239751 |
207 | E>G | No |
ClinGen TOPMed |
|
|
CA368742799 rs1383127080 |
212 | V>A | No |
ClinGen gnomAD |
|
|
rs1158172908 CA368742795 |
212 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs776715911 CA4419115 |
221 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA368742886 rs1239171805 |
226 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA4419121 rs774084514 |
232 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
RCV001280764 rs1820573027 |
251 | G>C | No |
ClinVar dbSNP |
|
|
CA163863327 rs6976756 |
258 | R>G | No |
ClinGen Ensembl |
|
| TCGA novel | 259 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1424301674 CA368744834 |
264 | A>S | No |
ClinGen TOPMed |
|
|
CA163863341 rs899314491 |
266 | T>K | No |
ClinGen Ensembl |
|
|
rs774315848 CA4419138 |
274 | F>C | No |
ClinGen ExAC gnomAD |
|
|
rs183644599 CA4419139 |
280 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA368745453 rs1404896008 |
282 | G>V | No |
ClinGen gnomAD |
|
| TCGA novel | 284 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs4520097 CA368746134 |
312 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA368746179 rs1172943426 |
314 | N>S | No |
ClinGen TOPMed |
|
|
CA163864236 rs1803992 |
329 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA163864239 rs989899179 |
332 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
CA368746560 rs1242948525 |
337 | L>M | No |
ClinGen gnomAD |
|
| TCGA novel | 340 | K>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs372290123 CA4419165 |
344 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs913931764 CA163864287 |
347 | D>E | No |
ClinGen TOPMed |
|
|
rs374218623 CA4419168 |
347 | D>N | No |
ClinGen ESP ExAC gnomAD |
|
|
rs374218623 CA368746811 |
347 | D>Y | No |
ClinGen ESP ExAC gnomAD |
|
|
rs113265696 CA163864314 |
348 | L>P | No |
ClinGen gnomAD |
|
|
CA368746851 rs1453467518 |
349 | E>A | No |
ClinGen gnomAD |
|
|
CA368746950 rs1199999323 |
351 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 351 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA4419178 rs753838245 |
354 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs757417747 CA4419179 |
355 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA368747044 rs1586179656 |
358 | H>D | No |
ClinGen Ensembl |
|
|
rs745807754 CA4419181 |
359 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs771939160 CA4419182 |
360 | R>C | Variant assessed as Somatic; 4.621e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs772460361 CA163864431 |
360 | R>H | No |
ClinGen Ensembl |
|
|
CA4419183 rs773539785 |
362 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1803990 CA163864436 |
363 | S>N | No |
ClinGen Ensembl |
|
|
CA163864437 rs977400893 |
368 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
rs201746080 CA163864442 |
371 | E>K | No |
ClinGen 1000Genomes ExAC |
|
|
rs201746080 CA4419184 |
371 | E>Q | No |
ClinGen 1000Genomes ExAC |
|
| TCGA novel | 375 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA163864446 rs371675280 |
375 | R>Q | No |
ClinGen ESP TOPMed |
|
| TCGA novel | 384 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1337766156 CA368747487 |
388 | V>I | No |
ClinGen TOPMed |
|
|
rs201353285 CA4419210 |
390 | T>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 391 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1461546339 CA368747571 |
394 | M>V | No |
ClinGen gnomAD |
|
|
rs974031148 CA163864640 |
395 | F>L | No |
ClinGen Ensembl |
|
|
CA368747621 rs1182603205 |
396 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
COSM461713 rs760946308 CA4419212 |
397 | I>M | cervix Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA4419215 rs762149278 |
400 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776663282 CA4419214 |
400 | R>W | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 401 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs765372278 CA4419216 |
403 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs1586180390 CA368747700 |
403 | I>N | No |
ClinGen Ensembl |
|
|
rs1160902952 CA368747715 |
404 | A>G | No |
ClinGen TOPMed |
|
|
CA4419217 rs377111119 |
405 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
rs766216737 CA4419219 |
407 | K>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 409 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs751517040 CA4419220 |
412 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754669233 CA4419221 |
413 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs1338736968 CA368747935 |
417 | I>M | No |
ClinGen gnomAD |
|
|
CA4419222 rs781059128 |
419 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1253679349 CA368748005 |
422 | K>R | No |
ClinGen gnomAD |
|
| TCGA novel | 428 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs370553048 CA163864728 |
428 | R>H | No |
ClinGen ESP gnomAD |
|
|
rs571188683 CA4419225 |
431 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
No associated diseases with P35998
13 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytoplasmic ribonucleoprotein granule | A ribonucleoprotein granule located in the cytoplasm. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| ficolin-1-rich granule lumen | Any membrane-enclosed lumen that is part of a ficolin-1-rich granule. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| P-body | A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing. |
| proteasome accessory complex | A protein complex, that caps one or both ends of the proteasome core complex and regulates entry into, or exit from, the proteasome core complex. |
| proteasome complex | A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. |
| proteasome regulatory particle, base subcomplex | The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. |
| secretory granule lumen | The volume enclosed by the membrane of a secretory granule. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
| proteasome-activating activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| osteoblast differentiation | The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone. |
| positive regulation of proteasomal protein catabolic process | Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. |
| proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
| ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
9 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P33299 | RPT1 | 26S proteasome regulatory subunit 7 homolog | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q5E9F9 | PSMC2 | 26S proteasome regulatory subunit 7 | Bos taurus (Bovine) | PR |
| P62333 | PSMC6 | 26S proteasome regulatory subunit 10B | Homo sapiens (Human) | PR |
| P43686 | PSMC4 | 26S proteasome regulatory subunit 6B | Homo sapiens (Human) | PR |
| P17980 | PSMC3 | 26S proteasome regulatory subunit 6A | Homo sapiens (Human) | PR |
| P62195 | PSMC5 | 26S proteasome regulatory subunit 8 | Homo sapiens (Human) | PR |
| P46471 | Psmc2 | 26S proteasome regulatory subunit 7 | Mus musculus (Mouse) | PR |
| Q63347 | Psmc2 | 26S proteasome regulatory subunit 7 | Rattus norvegicus (Rat) | PR |
| Q0WQM8 | At1g53790 | F-box protein At1g53790 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MPDYLGADQR | KTKEDEKDDK | PIRALDEGDI | ALLKTYGQST | YSRQIKQVED | DIQQLLKKIN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| ELTGIKESDT | GLAPPALWDL | AADKQTLQSE | QPLQVARCTK | IINADSEDPK | YIINVKQFAK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| FVVDLSDQVA | PTDIEEGMRV | GVDRNKYQIH | IPLPPKIDPT | VTMMQVEEKP | DVTYSDVGGC |
| 190 | 200 | 210 | 220 | 230 | 240 |
| KEQIEKLREV | VETPLLHPER | FVNLGIEPPK | GVLLFGPPGT | GKTLCARAVA | NRTDACFIRV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| IGSELVQKYV | GEGARMVREL | FEMARTKKAC | LIFFDEIDAI | GGARFDDGAG | GDNEVQRTML |
| 310 | 320 | 330 | 340 | 350 | 360 |
| ELINQLDGFD | PRGNIKVLMA | TNRPDTLDPA | LMRPGRLDRK | IEFSLPDLEG | RTHIFKIHAR |
| 370 | 380 | 390 | 400 | 410 | 420 |
| SMSVERDIRF | ELLARLCPNS | TGAEIRSVCT | EAGMFAIRAR | RKIATEKDFL | EAVNKVIKSY |
| 430 | |||||
| AKFSATPRYM | TYN |