P08575
Gene name |
PTPRC |
Protein name |
Receptor-type tyrosine-protein phosphatase C |
Names |
|
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5788 |
EC number |
3.1.3.48: Phosphoric monoester hydrolases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1443 variants for P08575
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs759182888 RCV001975549 |
1 | M>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs781080051 CA344098056 RCV001046302 |
18 | D>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000818463 CA344096721 rs1571844516 |
40 | M>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000801394 rs1159457079 CA344096733 |
42 | S>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
rs149488488 RCV001340251 CA1314415 |
47 | S>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs114764326 CA1314421 RCV000640075 |
52 | T>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs774680729 RCV001348333 CA1314425 |
60 | A>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001327345 rs776696394 CA1314428 |
66 | E>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs1364776797 RCV001319557 |
78 | P>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs149798940 CA1314438 RCV000695229 |
87 | P>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA36182640 rs988779141 RCV001041749 |
104 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs201751375 CA1314464 RCV000809902 |
113 | A>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000796349 rs202180702 RCV002537023 RCV003224473 CA1314468 |
116 | Q>P | Immunodeficiency 104 Immunodeficiency 105 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000640055 rs1553237882 CA344097219 |
118 | P>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000555361 rs41269905 RCV000127661 CA292980 |
123 | D>H | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA1314477 RCV000813866 rs753127621 |
126 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000802790 rs1571847562 CA344097308 |
132 | A>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs200531350 RCV000818347 RCV002536902 RCV000788329 CA1314482 |
141 | G>R | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV001225735 rs560558320 CA1314507 |
149 | P>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV001065960 rs1666509501 |
167 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1666510866 RCV001316544 |
174 | H>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs758362738 RCV001043851 CA1314521 |
175 | H>Y | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
rs1558008164 CA344097611 RCV000689974 |
179 | A>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
CA1314522 RCV001346216 rs527641821 |
182 | A>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV002538021 rs561155698 CA36182882 RCV000799379 |
183 | R>C | Variant assessed as Somatic; impact. Immunodeficiency 104 Inborn genetic diseases [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP |
|
rs138554556 RCV001205204 CA1314523 |
183 | R>H | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
CA1314524 RCV001089279 RCV000610984 RCV000757705 rs201715157 |
189 | I>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA1314529 RCV001613351 rs4915154 RCV000544148 VAR_036860 RCV001805170 |
193 | T>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001575804 rs148561683 CA1314554 RCV000640068 |
216 | T>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs199882367 RCV001233679 CA1314593 |
223 | P>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs535416574 RCV000699733 RCV003133552 CA1314607 RCV002534377 |
234 | N>D | Immunodeficiency 104 Immunodeficiency 105 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV000800241 rs1571855329 CA344033038 |
238 | D>H | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs780129489 CA344033313 RCV000640065 CA1314614 |
256 | E>D | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ExAC gnomAD ClinVar dbSNP |
|
CA1314616 rs142941257 RCV000768296 RCV000441811 |
261 | G>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1653004183 RCV001297015 |
274 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000814706 CA344033723 rs1189209220 |
279 | A>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000687956 rs1240486262 CA344033784 |
283 | I>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
CA1314623 RCV002561760 rs199673441 RCV001211597 |
286 | N>D | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs2230606 RCV000127662 VAR_051763 RCV000556114 CA292982 |
296 | I>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000640058 rs1553239425 CA344034421 |
307 | Q>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1279900525 CA344034447 RCV001057450 |
309 | H>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000806683 CA1314656 rs368910528 |
322 | C>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC dbSNP gnomAD |
|
rs41314039 RCV000640052 RCV002481643 RCV001811003 CA1314657 |
328 | I>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs2274367 RCV000640064 CA1314658 |
329 | E>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA1314660 rs148025707 RCV000688357 |
332 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA344034804 rs1558012466 RCV000691500 |
335 | T>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs79141749 CA1314697 RCV002480285 RCV000559618 RCV000440086 |
351 | N>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1558013560 CA344034958 RCV000703414 |
354 | I>M | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV001335069 CA35889902 rs917430300 |
362 | E>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
| VAR_021205 | 364 | E>del | IMD105; associated with lack of surface expression [UniProt] | Yes | UniProt |
|
RCV001225528 CA1314709 rs776036789 |
381 | A>T | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
rs1653389355 RCV001210850 |
394 | E>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000819642 CA35891305 rs775095087 |
397 | I>F | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
VAR_051764 RCV000535842 RCV000437442 CA1314742 rs6696162 |
423 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000547900 CA1314771 RCV001775862 rs140403368 |
433 | D>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs375608198 RCV000705389 CA344037251 |
441 | L>M | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000695312 RCV002532292 rs1297093496 CA344037431 |
453 | T>S | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000804558 CA35893063 rs899389630 |
464 | I>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs61749266 RCV000697731 RCV002533498 CA1314786 |
481 | K>E | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA344038706 rs1432775291 RCV000528586 |
486 | S>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
CA1314808 RCV000795558 rs200407298 |
486 | S>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001035755 rs1653684365 |
488 | V>F | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000640056 CA35893520 CA344038753 rs910573647 |
491 | M>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen TOPMed gnomAD ClinVar dbSNP |
|
CA1314812 RCV001221554 rs545961977 |
493 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA1314814 rs555467190 RCV001225871 |
498 | D>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV001057409 CA344038915 rs1193789799 |
503 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
RCV001226161 rs746951007 CA1314821 |
511 | R>C | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000701442 CA344039166 rs1203819767 |
519 | H>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs116464756 RCV000757704 CA1314828 RCV000640083 RCV003224346 |
523 | E>V | Immunodeficiency 104 Immunodeficiency 105 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1380213873 RCV001215243 CA344039289 |
526 | N>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
CA1314830 RCV000804482 rs757782403 |
531 | N>H | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA344039382 RCV001302992 rs1333928530 |
533 | S>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs144856406 RCV001315517 CA1314836 |
538 | D>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV002260603 rs398122383 CA144640 |
542 | K>* | Immunodeficiency 105 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
| VAR_087537 | 542 | K>del | IMD105 [UniProt] | Yes | UniProt |
|
RCV001055504 rs1653699172 |
543 | D>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs145467564 RCV000800993 CA1314842 |
548 | T>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1653701472 RCV001208299 |
552 | F>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1314862 RCV000803601 rs760244730 |
560 | D>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs141099643 RCV001318530 CA1314869 |
569 | H>Y | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs12136658 RCV001698969 VAR_051765 RCV000536624 CA292986 RCV000127664 |
570 | H>Q | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs376098272 RCV000811420 CA1314883 |
574 | Y>C | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001222543 rs1654236550 |
576 | S>F | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001316958 RCV002543710 CA1314895 rs150416673 |
596 | V>F | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001213352 rs370560920 CA1314897 |
602 | Y>C | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA dbSNP gnomAD |
|
CA344042201 RCV001308890 rs1417282394 |
612 | L>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
rs772094735 RCV001319921 |
622 | D>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs762123424 CA1314934 RCV000807029 |
622 | D>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1654392123 RCV001343271 |
629 | N>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1486244862 RCV001231457 CA344043891 |
631 | E>K | Variant assessed as Somatic; impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar NCI-TCGA dbSNP gnomAD |
|
rs868698846 RCV001066511 CA344044602 |
655 | A>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000815066 rs1571878480 CA344045209 |
669 | I>M | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000796373 CA1314972 rs777914316 |
678 | Q>H | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA344045515 RCV000698812 rs1553243145 |
682 | R>C | Variant assessed as Somatic; impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar Ensembl NCI-TCGA dbSNP |
|
RCV000640059 rs1553243145 CA344045513 |
682 | R>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV001055693 rs781335157 CA344045828 |
693 | R>H | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs1654442187 RCV001231289 |
703 | A>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001342085 CA1315000 rs760430276 |
708 | I>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA344047653 rs1189671328 RCV001305470 |
730 | D>Y | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
RCV000804078 RCV002537170 CA1315042 rs139089055 |
736 | F>L | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA344048545 rs1571880832 RCV000787279 |
765 | Y>* | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
CA344048622 rs1558030527 RCV000698806 |
769 | M>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000816929 rs752691679 CA1315077 |
770 | E>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV000806660 rs1571880881 CA344048712 |
773 | T>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000698219 RCV000757706 rs200672643 CA1315080 |
774 | R>W | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000820287 rs1571880941 |
788 | R>missing | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001351610 rs1654577048 |
793 | I>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1315095 rs185420520 RCV000541951 |
799 | I>F | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs148122103 RCV002553840 CA1315125 RCV001058175 CA1315126 |
823 | G>R | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ESP ExAC TOPMed gnomAD ClinVar dbSNP |
|
CA1315129 RCV001027843 RCV000521714 RCV003224307 rs146402228 |
830 | L>F | Immunodeficiency 104 Immunodeficiency 105 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1558034292 RCV000695822 CA344050439 |
832 | L>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs200065664 CA35908663 RCV001304651 |
835 | R>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV001242199 rs774612719 CA1315133 |
840 | A>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV000554554 CA1315138 rs765136427 RCV002530058 |
848 | P>L | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs752510149 RCV001307340 CA1315139 |
849 | I>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV002534341 RCV000697329 rs770932386 CA1315191 CA344051156 |
869 | M>I | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA1315192 rs775435143 RCV001049992 |
875 | A>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1654939426 RCV001226406 |
878 | K>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001217190 rs1654939978 |
881 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1315236 rs376357337 RCV000640051 |
927 | P>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA344051686 CA1315242 rs149625776 RCV000640063 |
931 | N>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA1315243 rs577595945 RCV001301860 |
941 | P>L | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
|
RCV000699112 rs1481095196 CA344051875 |
945 | E>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
RCV001240961 CA344051894 rs1269014792 RCV002568538 |
946 | A>G | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
CA1315279 rs766748068 RCV001335070 |
962 | I>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs755878222 RCV001306283 |
969 | K>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs779246448 RCV001236197 |
980 | Y>* | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs145944629 CA1315305 RCV000640062 RCV002533246 |
1000 | D>N | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1655286650 RCV001210144 |
1020 | A>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1315311 rs779502543 RCV001035256 |
1023 | I>V | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV001302109 rs1655333053 |
1041 | E>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs535347024 RCV001337279 CA1315359 |
1044 | G>S | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC dbSNP gnomAD |
|
rs1571894648 RCV000812478 CA344054139 |
1060 | M>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs1655337581 RCV001050699 |
1063 | E>D | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1558039602 RCV001217989 |
1064 | L>M | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001352627 rs1655338254 |
1066 | H>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001038134 rs1655418449 |
1077 | G>E | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001061117 rs984089455 CA35916861 |
1093 | T>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
|
rs760921606 CA1315402 RCV001037330 |
1102 | R>C | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001035287 rs765815787 CA1315437 |
1128 | E>G | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001036391 rs765840478 CA1315438 |
1130 | L>F | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001227584 rs1655438382 |
1134 | P>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000689391 CA1315439 RCV002547140 rs369268728 |
1135 | K>T | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA35917232 RCV001346633 rs937199866 |
1139 | S>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
|
RCV000801591 rs778966323 CA1315444 |
1142 | Q>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs758217317 CA344054796 RCV000802468 |
1143 | V>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs139041596 RCV001352549 CA1315448 |
1144 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001320048 rs959940059 |
1159 | H>D | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
rs772354314 CA1315480 RCV001348690 |
1173 | S>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1294347017 RCV002546826 CA344055304 RCV001337783 |
1180 | C>Y | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
RCV003224185 rs114970039 RCV000696429 RCV002485087 RCV000171165 CA235772 |
1182 | L>S | Immunodeficiency 104 Immunodeficiency 105 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs762923302 RCV001048871 CA1315484 |
1184 | N>T | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs751348881 RCV001307152 |
1187 | E>K | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001038376 rs113148246 RCV002252298 CA1315492 |
1193 | E>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs779568827 RCV000797833 CA1315494 |
1203 | A>S | Variant assessed as Somatic; 0.0 impact. Immunodeficiency 104 [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA dbSNP gnomAD |
|
rs766000320 RCV001307922 |
1221 | L>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1315534 rs150672767 RCV000755379 RCV001083271 RCV002282189 |
1224 | V>I | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA1315538 rs747330174 RCV001298077 |
1229 | Y>C | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001053903 CA1315547 rs773038500 |
1241 | H>Y | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1655632255 RCV001337585 |
1246 | I>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA1315557 RCV001053391 rs757598062 |
1258 | D>N | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001210854 rs1655635880 |
1262 | V>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001231779 rs1655636285 |
1264 | P>L | Immunodeficiency 104 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA344056267 RCV001330781 rs201641820 |
1278 | A>P | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
RCV000696847 CA1315569 rs200950466 RCV002533466 |
1282 | E>Q | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs775293081 CA1315570 RCV001307758 |
1283 | P>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs762501047 RCV001211122 RCV001265856 CA1315571 |
1284 | T>M | Immunodeficiency 104 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001061477 rs2298872 VAR_020303 CA1315572 |
1285 | S>R | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA1315581 RCV001493428 rs148331492 |
1305 | G>A | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001232324 CA1315582 rs148331492 |
1305 | G>D | Immunodeficiency 104 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
| TCGA novel | 1 | M>? | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs773900940 | 2 | T>C | No |
ExAC gnomAD |
|
|
CA1314358 rs768227005 |
2 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs772724488 CA1314361 |
3 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314360 rs368929179 |
3 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs773900940 CA1314362 |
4 | Y>C | No |
ClinGen ExAC gnomAD |
|
| rs761069010 | 4 | Y>R | No |
ExAC gnomAD |
|
|
TCGA novel rs761069010 CA1314363 |
6 | W>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC gnomAD NCI-TCGA |
| rs1571765578 | 6 | W>T | No | Ensembl | |
| rs1186725402 | 8 | K>F | No | gnomAD | |
|
CA344097994 rs1571765578 |
8 | K>T | No |
ClinGen Ensembl |
|
| rs61757803 | 8 | K>V | No |
ExAC TOPMed gnomAD |
|
| rs759684142 | 9 | L>S | No |
ExAC gnomAD |
|
| rs759684142 | 9 | L>T | No |
ExAC gnomAD |
|
|
rs1186725402 CA344098009 |
10 | L>F | No |
ClinGen gnomAD |
|
|
CA1314365 rs61757803 |
10 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1426202766 | 11 | A>D | No | gnomAD | |
|
CA344098011 rs759684142 |
11 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs759684142 CA1314366 |
11 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1426202766 CA344098028 |
13 | G>D | No |
ClinGen gnomAD |
|
| rs752797028 | 13 | G>V | No |
ExAC gnomAD |
|
|
CA1314368 rs752797028 |
15 | A>V | No |
ClinGen ExAC gnomAD |
|
| rs781080051 | 16 | F>H | No |
ExAC TOPMed gnomAD |
|
| rs781080051 | 16 | F>N | No |
ExAC TOPMed gnomAD |
|
|
rs781080051 CA1314370 |
18 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1288480100 | 19 | T>L | No | gnomAD | |
|
CA344098079 rs1288480100 |
21 | V>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| rs1174394984 | 23 | V>E | No | gnomAD | |
| rs752958303 | 24 | T>K | No |
ExAC gnomAD |
|
|
rs1174394984 CA344096198 |
25 | G>E | No |
ClinGen gnomAD |
|
| rs763020424 | 25 | G>I | No |
ExAC gnomAD |
|
| rs763020424 | 25 | G>N | No |
ExAC gnomAD |
|
|
CA1314386 rs752958303 |
26 | Q>K | No |
ClinGen ExAC gnomAD |
|
| rs750318458 | 26 | Q>L | No |
ExAC TOPMed gnomAD |
|
|
CA1314388 rs763020424 |
27 | S>I | No |
ClinGen ExAC gnomAD |
|
|
rs763020424 CA1314387 |
27 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs750318458 CA1314389 |
28 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs753850217 | 32 | P>E | No |
ExAC TOPMed gnomAD |
|
| rs369827350 | 33 | T>S | No |
ESP ExAC TOPMed gnomAD |
|
|
rs753850217 CA1314411 |
34 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs376744253 | 35 | L>R | No | Ensembl | |
|
CA1314412 rs369827350 |
35 | L>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs1571851078 | 37 | T>T | No | Ensembl | |
| rs148271722 | 38 | A>A | No | ESP | |
| rs1571844516 | 38 | A>I | No | Ensembl | |
| rs1471347474 | 39 | K>L | No | gnomAD | |
| rs1159457079 | 40 | M>I | No | gnomAD | |
| rs74536455 | 40 | M>P | No | gnomAD | |
| rs1159457079 | 40 | M>T | No | gnomAD | |
| rs765181971 | 41 | P>A | No |
ExAC gnomAD |
|
|
CA344096726 rs1471347474 |
41 | P>L | No |
ClinGen gnomAD |
|
|
rs1159457079 CA344096732 |
42 | S>T | No |
ClinGen gnomAD |
|
|
CA1314413 rs765181971 |
43 | V>A | No |
ClinGen ExAC gnomAD |
|
| rs149488488 | 45 | L>G | No |
ESP ExAC TOPMed gnomAD |
|
| rs1271131973 | 46 | S>E | No | TOPMed | |
| rs746480752 | 47 | S>S | No |
ExAC TOPMed gnomAD |
|
| rs746480752 | 47 | S>T | No |
ExAC TOPMed gnomAD |
|
|
CA344096772 rs1271131973 |
48 | D>E | No |
ClinGen TOPMed |
|
| rs1476873676 | 48 | D>I | No | gnomAD | |
| rs1279852502 | 49 | P>L | No | gnomAD | |
| rs200613730 | 49 | P>S | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs746435286 | 49 | P>S | No |
ExAC gnomAD |
|
|
CA1314418 rs746480752 |
49 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746480752 CA1314417 |
49 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs114764326 | 50 | L>A | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs951948469 | 51 | P>D | No | TOPMed | |
|
CA344096789 rs1279852502 |
51 | P>L | No |
ClinGen gnomAD |
|
|
rs746435286 CA1314420 |
51 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| rs139323040 | 51 | P>V | No |
ESP ExAC TOPMed gnomAD |
|
| rs775839710 | 52 | T>A | No |
ExAC gnomAD |
|
| rs1203601910 | 52 | T>N | No | gnomAD | |
| rs1203601910 | 52 | T>S | No | gnomAD | |
| rs148561683 | 53 | H>A | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs951948469 CA36182371 |
53 | H>D | No |
ClinGen TOPMed |
|
| rs148561683 | 53 | H>P | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1314422 rs775839710 |
54 | T>A | No |
ClinGen ExAC gnomAD |
|
| rs146065363 | 54 | T>A | No |
ESP ExAC TOPMed gnomAD |
|
|
CA344096804 rs1203601910 |
54 | T>N | No |
ClinGen gnomAD |
|
|
CA344096805 rs1203601910 |
54 | T>S | No |
ClinGen gnomAD |
|
| rs1490524921 | 54 | T>S | No | gnomAD | |
|
rs1490524921 CA344096815 |
56 | A>S | No |
ClinGen gnomAD |
|
| rs1329107092 | 56 | A>T | No | gnomAD | |
| rs1403116788 | 57 | F>G | No | gnomAD | |
| rs1558004428 | 58 | S>G | No | Ensembl | |
| rs774680729 | 58 | S>T | No |
ExAC TOPMed gnomAD |
|
|
CA344096842 rs1558004428 |
60 | A>G | No |
ClinGen Ensembl |
|
| rs767699746 | 60 | A>I | No |
ExAC gnomAD |
|
| rs199882367 | 60 | A>T | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
rs767699746 CA1314427 |
62 | T>I | No |
ClinGen ExAC gnomAD |
|
| rs1571844679 | 62 | T>K | No | Ensembl | |
| rs746042319 | 63 | F>A | No |
ExAC gnomAD |
|
| rs746042319 | 63 | F>S | No |
ExAC gnomAD |
|
| rs776696394 | 64 | E>K | No |
ExAC TOPMed gnomAD |
|
|
rs1571844679 RCV000788152 CA344096865 |
64 | E>K | No |
ClinGen ClinVar Ensembl dbSNP |
|
| rs899966685 | 66 | E>G | No | Ensembl | |
| rs1461308177 | 66 | E>H | No | TOPMed | |
| rs1282201819 | 67 | N>K | No | TOPMed | |
|
rs899966685 CA36182374 |
68 | D>G | No |
ClinGen Ensembl |
|
|
rs1461308177 CA344096896 |
68 | D>H | No |
ClinGen TOPMed |
|
| rs1571855276 | 68 | D>N | No | Ensembl | |
| rs1553239146 | 68 | D>R | No | Ensembl | |
| rs1571855288 | 70 | S>G | No | Ensembl | |
| rs765055683 | 72 | T>A | No |
ExAC gnomAD |
|
| rs758264225 | 73 | T>F | No |
ExAC gnomAD |
|
|
rs765055683 CA1314430 |
74 | T>A | No |
ClinGen ExAC gnomAD |
|
| rs975885112 | 74 | T>V | No | TOPMed | |
| rs1571844719 | 75 | S>C | No | Ensembl | |
|
rs758264225 CA1314432 |
75 | S>F | No |
ClinGen ExAC gnomAD |
|
| rs751293994 | 75 | S>R | No |
ExAC gnomAD |
|
| rs751970504 | 76 | L>F | No |
ExAC gnomAD |
|
| rs866558681 | 76 | L>L | No | Ensembl | |
| rs1364776797 | 76 | L>T | No | gnomAD | |
|
rs975885112 CA36182375 |
76 | L>V | No |
ClinGen TOPMed |
|
|
rs1571844719 CA344096952 |
77 | S>C | No |
ClinGen Ensembl |
|
|
rs751293994 CA1314434 |
77 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs866558681 CA36182376 |
78 | P>L | No |
ClinGen Ensembl |
|
|
rs1364776797 CA344096958 |
78 | P>T | No |
ClinGen gnomAD |
|
| rs1329360713 | 79 | D>I | No | gnomAD | |
| rs1267788074 | 79 | D>S | No | gnomAD | |
| rs868710420 | 80 | N>F | No | gnomAD | |
| rs375051221 | 81 | T>I | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
CA344096984 COSM1470141 rs1329360713 |
81 | T>I | prostate [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs868710420 CA36182377 |
82 | S>F | No |
ClinGen gnomAD |
|
|
rs375051221 CA1314436 |
83 | T>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
| rs149798940 | 85 | V>L | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs757784543 | 85 | V>S | No | ExAC | |
| rs536748539 | 86 | S>G | No |
1000Genomes ExAC gnomAD |
|
| rs748460083 | 87 | P>F | No |
ExAC gnomAD |
|
| rs781701825 | 87 | P>G | No |
ExAC gnomAD |
|
| rs771987218 | 88 | D>F | No |
ExAC gnomAD |
|
|
rs536748539 CA1314441 |
88 | D>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| rs1250308154 | 88 | D>W | No | gnomAD | |
| rs1212958184 | 89 | S>E | No | TOPMed | |
|
rs748460083 CA1314443 |
89 | S>F | No |
ClinGen ExAC gnomAD |
|
| rs1251140498 | 89 | S>N | No | TOPMed | |
| TCGA novel | 89 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs61757804 | 90 | L>D | No |
ExAC TOPMed gnomAD |
|
|
rs771987218 CA1314444 |
90 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA344097036 rs1250308154 |
90 | L>W | No |
ClinGen gnomAD |
|
|
CA344097044 rs1212958184 |
91 | D>E | No |
ClinGen TOPMed |
|
|
rs1251140498 CA344097038 |
91 | D>N | No |
ClinGen TOPMed |
|
| rs1244631323 | 91 | D>T | No | gnomAD | |
|
rs61757804 CA1314445 |
92 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs770214288 | 92 | N>H | No | ExAC | |
| rs759505457 | 92 | N>N | No |
ExAC TOPMed gnomAD |
|
| rs1158057562 | 92 | N>S | No | gnomAD | |
| rs759505457 | 92 | N>T | No |
ExAC TOPMed gnomAD |
|
| rs780129489 | 93 | A>D | No |
ExAC gnomAD |
|
| TCGA novel | 93 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1003948419 | 93 | A>P | No | Ensembl | |
|
CA344097054 rs1244631323 |
93 | A>T | No |
ClinGen gnomAD |
|
|
rs759505457 CA1314446 |
94 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759505457 CA344097062 |
94 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1003948419 CA36182378 |
95 | A>P | No |
ClinGen Ensembl |
|
| rs1323165536 | 96 | F>A | No | gnomAD | |
| rs762651341 | 97 | N>A | No |
ExAC gnomAD |
|
|
CA344097088 rs1323165536 |
98 | T>A | No |
ClinGen gnomAD |
|
| rs1367301156 | 98 | T>R | No | gnomAD | |
|
rs762651341 CA1314449 |
99 | T>A | No |
ClinGen ExAC gnomAD |
|
| rs1298769494 | 101 | V>I | No | gnomAD | |
| rs1178335552 | 101 | V>T | No | gnomAD | |
| rs988779141 | 102 | S>I | No |
TOPMed gnomAD |
|
| rs1394814934 | 103 | S>E | No | TOPMed | |
| rs772369890 | 103 | S>L | No |
ExAC TOPMed gnomAD |
|
| rs772369890 | 103 | S>R | No |
ExAC TOPMed gnomAD |
|
|
rs1178335552 CA344097129 |
103 | S>T | No |
ClinGen gnomAD |
|
| rs1553239175 | 105 | Q>D | No | Ensembl | |
|
rs1394814934 CA344097139 |
105 | Q>E | No |
ClinGen TOPMed |
|
|
rs772369890 CA344097142 |
105 | Q>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 105 | Q>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs772369890 CA1314461 |
105 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs777950017 | 106 | T>P | No |
ExAC TOPMed gnomAD |
|
|
rs777950017 CA1314462 |
108 | H>P | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs747055380 | 109 | L>K | No |
ExAC gnomAD |
|
| rs747055380 | 109 | L>R | No |
ExAC gnomAD |
|
| rs1474445832 | 110 | P>I | No | TOPMed | |
|
rs747055380 CA1314463 |
111 | T>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA344097179 rs747055380 |
111 | T>R | No |
ClinGen ExAC gnomAD |
|
| rs201751375 | 111 | T>S | No |
ESP ExAC TOPMed gnomAD |
|
| rs1339113484 | 111 | T>V | No | gnomAD | |
| rs1384831062 | 113 | A>T | No | gnomAD | |
|
rs1339113484 CA344097192 |
113 | A>V | No |
ClinGen gnomAD |
|
| rs768271323 | 114 | D>E | No |
ExAC gnomAD |
|
| rs202180702 | 114 | D>P | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1253903025 | 115 | S>M | No |
TOPMed gnomAD |
|
| rs1571847453 | 115 | S>S | No | Ensembl | |
|
CA344097201 rs1384831062 |
115 | S>T | No |
ClinGen gnomAD |
|
|
rs768271323 CA1314467 |
116 | Q>E | No |
ClinGen ExAC gnomAD |
|
| rs1553237882 | 116 | Q>T | No | Ensembl | |
|
CA344097216 rs1253903025 |
117 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1571847453 CA344097215 |
117 | T>S | No |
ClinGen Ensembl |
|
| rs1558011361 | 118 | P>L | No | Ensembl | |
| rs767130769 | 118 | P>V | No |
ExAC gnomAD |
|
|
rs767130769 CA1314470 |
120 | A>V | No |
ClinGen ExAC gnomAD |
|
| rs1266308410 | 121 | G>G | No | TOPMed | |
| rs41269905 | 121 | G>H | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1178168643 | 122 | T>Q | No | gnomAD | |
| rs765927930 | 122 | T>R | No |
ExAC gnomAD |
|
|
CA344097251 rs1266308410 |
123 | D>G | No |
ClinGen TOPMed |
|
| rs370907315 | 123 | D>R | No |
ESP ExAC TOPMed gnomAD |
|
| rs753127621 | 124 | T>I | No |
ExAC TOPMed gnomAD |
|
| rs779106980 | 124 | T>P | No |
ExAC TOPMed gnomAD |
|
|
rs765927930 CA1314473 |
124 | T>R | No |
ClinGen ExAC gnomAD |
|
| rs779106980 | 124 | T>S | No |
ExAC TOPMed gnomAD |
|
|
CA1314475 rs370907315 |
125 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs778137179 | 125 | Q>S | No |
ExAC TOPMed gnomAD |
|
|
rs779106980 CA344097267 |
126 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314476 rs779106980 |
126 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1367339525 | 127 | F>D | No | TOPMed | |
| TCGA novel | 127 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1314479 rs778137179 |
127 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1295272657 | 128 | S>F | No | TOPMed | |
| rs1284459301 | 128 | S>P | No | gnomAD | |
|
rs1367339525 CA344097289 |
129 | G>D | No |
ClinGen TOPMed |
|
| rs1345381608 | 129 | G>P | No | gnomAD | |
|
CA344097297 rs1295272657 |
130 | S>F | No |
ClinGen TOPMed |
|
| rs1571847562 | 130 | S>G | No | Ensembl | |
|
rs1284459301 CA344097293 |
130 | S>P | No |
ClinGen gnomAD |
|
| rs1217861244 | 130 | S>S | No | gnomAD | |
| rs374439003 | 130 | S>T | No | Ensembl | |
| rs747294735 | 131 | A>H | No |
ExAC gnomAD |
|
|
rs1345381608 CA344097299 |
131 | A>P | No |
ClinGen gnomAD |
|
| rs1318366185 | 131 | A>S | No |
TOPMed gnomAD |
|
|
rs1217861244 CA344097305 |
132 | A>S | No |
ClinGen gnomAD |
|
|
CA1314480 rs747294735 |
133 | N>H | No |
ClinGen ExAC gnomAD |
|
| rs2230606 | 133 | N>L | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA344097313 rs1318366185 |
133 | N>S | No |
ClinGen TOPMed gnomAD |
|
| rs201362674 | 134 | A>R | No | 1000Genomes | |
| rs756803136 | 135 | K>H | No |
ExAC TOPMed gnomAD |
|
| rs756803136 | 135 | K>N | No |
ExAC TOPMed gnomAD |
|
| rs941109919 | 135 | K>S | No |
TOPMed gnomAD |
|
| rs1224015214 | 136 | L>A | No | gnomAD | |
| rs752408704 | 136 | L>L | No |
TOPMed gnomAD |
|
| rs1383621839 | 136 | L>M | No | TOPMed | |
|
CA36182643 rs201362674 |
136 | L>R | No |
ClinGen 1000Genomes |
|
|
rs941109919 CA36182644 |
137 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA344097344 rs1224015214 |
138 | P>A | No |
ClinGen gnomAD |
|
| rs1291923222 | 138 | P>A | No | Ensembl | |
|
rs752408704 CA36182645 |
138 | P>L | No |
ClinGen TOPMed gnomAD |
|
| rs1170608605 | 139 | T>D | No | TOPMed | |
| rs200531350 | 139 | T>R | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
rs1291923222 CA344097355 |
140 | P>A | No |
ClinGen Ensembl |
|
| rs1189264575 | 140 | P>G | No | gnomAD | |
|
CA344097362 rs1170608605 |
141 | G>D | No |
ClinGen TOPMed |
|
| TCGA novel | 141 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1571847636 | 142 | S>D | No | Ensembl | |
|
CA344097366 rs1189264575 |
142 | S>G | No |
ClinGen gnomAD |
|
| rs768665134 | 143 | N>N | No |
ExAC gnomAD |
|
| rs1158616706 | 143 | N>V | No | gnomAD | |
|
rs1571847636 CA344097384 |
144 | A>D | No |
ClinGen Ensembl |
|
| rs1392608565 | 145 | I>H | No | TOPMed | |
|
CA1314484 rs768665134 |
145 | I>N | No |
ClinGen ExAC gnomAD |
|
|
rs1158616706 CA344097388 |
145 | I>V | No |
ClinGen gnomAD |
|
| TCGA novel | 146 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1392608565 CA344097400 |
147 | D>H | No |
ClinGen TOPMed |
|
| rs560558320 | 147 | D>L | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
rs750858062 TCGA novel |
147 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ExAC gnomAD NCI-TCGA |
| rs776194748 | 148 | V>E | No |
ExAC gnomAD |
|
| rs764712415 | 149 | P>D | No |
ExAC gnomAD |
|
| rs759082475 | 149 | P>K | No |
ExAC gnomAD |
|
|
CA1314508 rs776194748 |
150 | G>E | No |
ClinGen ExAC gnomAD |
|
| rs1226583954 | 150 | G>S | No | gnomAD | |
|
CA1314510 rs764712415 |
151 | E>D | No |
ClinGen ExAC gnomAD |
|
| rs1408499004 | 151 | E>I | No | Ensembl | |
|
rs759082475 CA1314509 |
151 | E>K | No |
ClinGen ExAC gnomAD |
|
| rs776009650 | 151 | E>N | No |
ExAC TOPMed gnomAD |
|
| rs776009650 | 151 | E>T | No |
ExAC TOPMed gnomAD |
|
| rs763559463 | 152 | R>I | No |
ExAC gnomAD |
|
|
CA344097447 rs1226583954 |
152 | R>S | No |
ClinGen gnomAD |
|
|
CA1314511 rs776009650 |
153 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA36182878 rs776009650 |
153 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314512 rs763559463 |
154 | T>I | No |
ClinGen ExAC gnomAD |
|
| rs764517655 | 154 | T>N | No | ExAC | |
| rs140527232 | 155 | A>I | No |
ESP ExAC TOPMed gnomAD |
|
|
CA1314513 rs764517655 |
156 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA1314514 rs140527232 |
157 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs368910528 | 159 | P>S | No |
ESP ExAC gnomAD |
|
| rs1462866392 | 159 | P>V | No | gnomAD | |
| rs767752802 | 161 | D>I | No |
ExAC gnomAD |
|
|
rs1462866392 CA344097502 |
161 | D>V | No |
ClinGen gnomAD |
|
| rs1237015738 | 162 | P>F | No | gnomAD | |
|
CA1314516 rs767752802 |
163 | V>I | No |
ClinGen ExAC gnomAD |
|
| rs750674861 | 164 | S>F | No |
ExAC gnomAD |
|
|
rs1237015738 CA344097521 |
164 | S>F | No |
ClinGen gnomAD |
|
| rs1210926803 | 164 | S>T | No | gnomAD | |
| rs756201842 | 165 | P>A | No |
ExAC gnomAD |
|
| rs41314039 | 165 | P>F | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs41314039 | 165 | P>V | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs2274367 | 166 | L>* | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs914949393 | 166 | L>A | No | TOPMed | |
|
rs750674861 CA1314517 |
166 | L>F | No |
ClinGen ExAC gnomAD |
|
| rs2274367 | 166 | L>K | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs780009687 | 166 | L>N | No |
ExAC gnomAD |
|
|
rs756201842 CA1314518 |
167 | T>A | No |
ClinGen ExAC gnomAD |
|
| rs1289559543 | 167 | T>I | No | TOPMed | |
|
CA36182880 rs914949393 |
168 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA1314519 rs780009687 |
168 | T>N | No |
ClinGen ExAC gnomAD |
|
| rs945167747 | 169 | T>G | No |
TOPMed gnomAD |
|
|
CA344097548 rs1289559543 |
169 | T>I | No |
ClinGen TOPMed |
|
|
CA36182881 rs945167747 |
171 | S>G | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 171 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1558008145 | 171 | S>V | No | Ensembl | |
| rs1558012466 | 172 | L>A | No | Ensembl | |
| rs1367893170 | 173 | A>K | No | gnomAD | |
|
CA344097573 rs1558008145 |
173 | A>V | No |
ClinGen Ensembl |
|
| rs758362738 | 173 | A>Y | No |
ExAC gnomAD |
|
| rs778005183 | 174 | H>K | No |
ExAC gnomAD |
|
| TCGA novel | 174 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1466660990 | 175 | H>V | No | TOPMed | |
| rs1558008164 | 177 | S>T | No | Ensembl | |
| rs1470776251 | 179 | A>L | No |
TOPMed gnomAD |
|
| rs527641821 | 180 | L>E | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs775327712 | 180 | L>E | No |
ExAC TOPMed gnomAD |
|
| rs561155698 | 181 | P>C | No | TOPMed | |
| rs768391663 | 181 | P>G | No |
ExAC gnomAD |
|
| rs561155698 | 181 | P>G | No | TOPMed | |
| rs138554556 | 181 | P>H | No |
ESP ExAC TOPMed gnomAD |
|
|
CA344097626 rs1470776251 |
181 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA344097634 rs561155698 |
183 | R>G | No |
ClinGen TOPMed |
|
| rs371143780 | 187 | T>M | No |
ESP ExAC gnomAD |
|
| rs201715157 | 187 | T>N | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs199705589 | 188 | T>I | No |
1000Genomes ExAC gnomAD |
|
|
CA1314525 rs371143780 |
189 | I>M | No |
ClinGen ESP ExAC gnomAD |
|
| rs1276140091 | 189 | I>V | No |
TOPMed gnomAD |
|
| rs867776290 | 190 | T>A | No |
TOPMed gnomAD |
|
|
CA1314526 rs199705589 |
190 | T>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| rs4915154 | 191 | A>A | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1558013560 | 191 | A>M | No | Ensembl | |
|
rs1276140091 CA344097684 |
191 | A>V | No |
ClinGen TOPMed gnomAD |
|
| rs201052150 | 195 | D>C | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
CA1314543 rs201052150 |
197 | Y>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| rs369311409 | 197 | Y>S | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA36182966 rs376744253 |
198 | L>R | No |
ClinGen Ensembl |
|
| rs1319085292 | 198 | L>V | No | Ensembl | |
| rs917430300 | 199 | N>K | No |
TOPMed gnomAD |
|
|
CA1314544 rs369311409 |
199 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1289810255 | 200 | A>Q | No | TOPMed | |
|
rs1571851078 CA344097746 |
200 | A>T | No |
ClinGen Ensembl |
|
|
CA344097751 rs1319085292 |
200 | A>V | No |
ClinGen Ensembl |
|
|
rs148271722 CA36182968 |
201 | S>A | No |
ClinGen ESP |
|
| rs1443356733 | 203 | T>I | No | TOPMed | |
|
CA36182970 rs74536455 |
203 | T>P | No |
ClinGen gnomAD |
|
|
CA344097780 rs1443356733 |
205 | T>I | No |
ClinGen TOPMed |
|
| rs774982014 | 205 | T>T | No |
ExAC gnomAD |
|
| rs762236684 | 206 | L>S | No |
ExAC TOPMed gnomAD |
|
|
CA1314548 rs774982014 |
207 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA1314549 rs762236684 |
208 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| rs999211601 | 208 | P>V | No | TOPMed | |
| rs771923388 | 210 | G>C | No |
ExAC gnomAD |
|
| rs1428550336 | 210 | G>H | No | TOPMed | |
| rs200613730 | 210 | G>T | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs368551275 | 210 | G>V | No |
ESP ExAC TOPMed gnomAD |
|
|
rs1476873676 CA344097816 |
211 | S>I | No |
ClinGen gnomAD |
|
|
rs200613730 CA36182971 |
212 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200613730 CA1314551 |
212 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1314552 rs368551275 |
212 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
| rs1466911164 | 213 | V>R | No | gnomAD | |
|
rs139323040 CA1314553 |
214 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs1322727034 | 215 | S>I | No | gnomAD | |
|
rs148561683 CA1314555 |
216 | T>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs146065363 CA1314556 |
217 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1322727034 CA344097848 |
217 | T>I | No |
ClinGen gnomAD |
|
| rs776036789 | 218 | T>T | No |
ExAC TOPMed gnomAD |
|
| rs1039401360 | 219 | I>N | No | Ensembl | |
|
rs1329107092 CA344097859 |
219 | I>T | No |
ClinGen gnomAD |
|
|
rs1403116788 CA344097878 |
220 | A>G | No |
ClinGen gnomAD |
|
| rs1370135148 | 220 | A>T | No | gnomAD | |
| TCGA novel | 220 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1473079919 | 222 | T>T | No | gnomAD | |
| TCGA novel | 224 | S>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs746042319 | 224 | S>T | No |
ExAC gnomAD |
|
| rs569454871 | 225 | K>I | No | 1000Genomes | |
|
rs746042319 CA344097912 |
226 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs746042319 CA1314594 |
226 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs746042319 CA344097911 |
226 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA36183085 rs569454871 |
227 | T>I | No |
ClinGen 1000Genomes |
|
| rs1482460896 | 229 | D>E | No | Ensembl | |
| VAR_035653 | 230 | E>A | a breast cancer sample; somatic mutation [UniProt] | No | UniProt |
|
CA344032947 rs1282201819 |
230 | E>K | No |
ClinGen TOPMed |
|
| rs1345142310 | 230 | E>V | No | gnomAD | |
| rs1571861601 | 231 | K>D | No | Ensembl | |
|
rs1482460896 CA344032961 |
231 | K>E | No |
ClinGen Ensembl |
|
| rs749814938 | 231 | K>K | No |
ExAC TOPMed gnomAD |
|
|
CA344032967 rs1571855276 |
231 | K>N | No |
ClinGen Ensembl |
|
|
RCV000506117 CA344032965 rs1553239146 |
231 | K>R | No |
ClinGen ClinVar Ensembl dbSNP |
|
| rs535416574 | 232 | Y>D | No |
1000Genomes ExAC TOPMed gnomAD |
|
|
rs1571855288 CA344032990 |
233 | A>G | No |
ClinGen Ensembl |
|
| rs775095087 | 234 | N>F | No |
TOPMed gnomAD |
|
| rs777341492 | 235 | I>M | No |
ExAC gnomAD |
|
| rs1571855329 | 236 | T>H | No | Ensembl | |
|
CA1314608 rs777341492 |
237 | V>M | No |
ClinGen ExAC gnomAD |
|
| rs1487228485 | 238 | D>V | No | gnomAD | |
|
CA1314609 rs751970504 |
239 | Y>F | No |
ClinGen ExAC gnomAD |
|
| rs1027514462 | 239 | Y>H | No |
TOPMed gnomAD |
|
| rs1444834078 | 240 | L>K | No | gnomAD | |
|
rs1487228485 CA344033063 |
240 | L>V | No |
ClinGen gnomAD |
|
|
rs1027514462 CA35888519 |
241 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
CA344033091 rs1267788074 |
242 | N>S | No |
ClinGen gnomAD |
|
| rs1432861899 | 243 | K>A | No | gnomAD | |
|
CA344033125 rs1432861899 |
245 | T>A | No |
ClinGen gnomAD |
|
| rs969521925 | 245 | T>A | No | Ensembl | |
|
rs757784543 CA1314610 |
248 | F>S | No |
ClinGen ExAC |
|
|
rs781701825 CA1314611 |
250 | A>G | No |
ClinGen ExAC gnomAD |
|
| rs372862661 | 250 | A>I | No |
ESP ExAC TOPMed |
|
| rs1365709950 | 252 | L>I | No | gnomAD | |
|
CA1314612 rs372862661 |
252 | L>I | No |
ClinGen ESP ExAC TOPMed |
|
| rs370664534 | 252 | L>L | No |
ESP ExAC gnomAD |
|
| rs868480883 | 253 | N>H | No | Ensembl | |
|
rs1365709950 CA344033258 |
254 | V>I | No |
ClinGen gnomAD |
|
|
CA1314613 rs770214288 |
255 | N>H | No |
ClinGen ExAC |
|
|
rs1158057562 CA344033284 |
255 | N>S | No |
ClinGen gnomAD |
|
| rs1378120301 | 256 | E>A | No | TOPMed | |
| rs1407279022 | 256 | E>M | No | gnomAD | |
| rs375453057 | 257 | N>G | No |
ESP ExAC TOPMed gnomAD |
|
| rs375453057 | 257 | N>V | No |
ESP ExAC TOPMed gnomAD |
|
|
CA344033355 rs1378120301 |
258 | V>A | No |
ClinGen TOPMed |
|
| rs568942553 | 258 | V>K | No |
1000Genomes ExAC gnomAD |
|
|
CA344033346 rs1407279022 |
258 | V>M | No |
ClinGen gnomAD |
|
|
rs375453057 CA35888529 |
259 | E>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1314615 rs375453057 |
259 | E>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs142941257 | 259 | E>V | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1367301156 CA344033415 |
261 | G>R | No |
ClinGen gnomAD |
|
|
rs1298769494 CA344033481 |
264 | T>I | No |
ClinGen gnomAD |
|
| TCGA novel | 264 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1157716262 | 264 | T>R | No | TOPMed | |
| rs780692784 | 264 | T>V | No |
ExAC gnomAD |
|
| rs1461459776 | 265 | C>K | No | TOPMed | |
| rs745527713 | 266 | T>Q | No |
ExAC gnomAD |
|
|
CA344033519 rs1157716262 |
266 | T>R | No |
ClinGen TOPMed |
|
| rs1277551838 | 267 | N>I | No | gnomAD | |
|
CA344033572 rs1461459776 |
267 | N>K | No |
ClinGen TOPMed |
|
|
CA344033579 rs1553239175 |
268 | N>D | No |
ClinGen Ensembl |
|
| rs1284672802 | 269 | E>P | No | gnomAD | |
| rs770968074 | 270 | V>K | No |
ExAC TOPMed gnomAD |
|
| rs760638253 | 270 | V>S | No |
ExAC gnomAD |
|
|
rs1284672802 CA344033641 |
271 | H>P | No |
ClinGen gnomAD |
|
| rs1440434993 | 272 | N>F | No | gnomAD | |
| rs1176620686 | 272 | N>H | No | gnomAD | |
|
rs770968074 CA1314619 |
272 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314618 rs760638253 |
272 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA344033655 rs1474445832 |
273 | L>I | No |
ClinGen TOPMed |
|
| rs1189209220 | 277 | K>T | No | gnomAD | |
| rs369888892 | 277 | K>V | No |
ESP ExAC TOPMed gnomAD |
|
| rs1323507987 | 279 | A>M | No |
TOPMed gnomAD |
|
|
CA1314621 rs369888892 |
279 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 281 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344033750 rs1558011361 |
281 | V>L | No |
ClinGen Ensembl |
|
| rs1240486262 | 281 | V>V | No | TOPMed | |
| rs199673441 | 284 | S>D | No |
ExAC gnomAD |
|
|
CA344033841 rs1178168643 |
285 | H>Q | No |
ClinGen gnomAD |
|
| rs1427150638 | 287 | S>S | No | gnomAD | |
|
rs1427150638 CA344033912 |
289 | T>S | No |
ClinGen gnomAD |
|
| rs762697900 | 289 | T>S | No |
ExAC TOPMed gnomAD |
|
|
rs762697900 CA1314624 |
291 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| rs763464289 | 293 | K>F | No |
ExAC TOPMed gnomAD |
|
|
CA35888588 rs374439003 |
293 | K>T | No |
ClinGen Ensembl |
|
|
CA1314625 rs763464289 |
295 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs774087579 | 295 | L>L | No |
ExAC gnomAD |
|
| rs750990114 | 297 | L>A | No |
ExAC TOPMed gnomAD |
|
| rs150366095 | 297 | L>R | No |
ESP ExAC TOPMed gnomAD |
|
|
CA344034084 rs756803136 |
298 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314626 rs756803136 |
298 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314628 rs750990114 |
299 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1383621839 CA344034106 |
299 | V>M | No |
ClinGen TOPMed |
|
| rs1458336940 | 300 | P>V | No | gnomAD | |
| rs899389630 | 301 | P>T | No |
TOPMed gnomAD |
|
| rs1014891412 | 301 | P>V | No |
TOPMed gnomAD |
|
| rs1553239425 | 305 | K>R | No | Ensembl | |
| rs1348367829 | 306 | F>H | No |
TOPMed gnomAD |
|
| rs1279900525 | 307 | Q>L | No | gnomAD | |
| rs1279900525 | 307 | Q>R | No | gnomAD | |
|
rs1279900525 CA344034449 |
309 | H>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs750858062 CA1314653 |
310 | D>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| rs1558018509 | 311 | C>E | No | Ensembl | |
| TCGA novel | 311 | C>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1173201390 | 311 | C>S | No | gnomAD | |
|
TCGA novel rs1309002581 |
313 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA TOPMed |
|
CA344034512 rs1408499004 |
314 | V>I | No |
ClinGen Ensembl |
|
|
rs1309002581 CA344034524 |
315 | E>K | No |
ClinGen TOPMed |
|
| TCGA novel | 320 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1432775291 | 323 | L>G | No | gnomAD | |
| rs759266994 | 323 | L>N | No |
ExAC gnomAD |
|
| rs1571857129 | 325 | W>H | No | Ensembl | |
|
rs1571857129 CA344034719 |
327 | N>H | No |
ClinGen Ensembl |
|
|
rs1210926803 CA344034721 |
327 | N>T | No |
ClinGen gnomAD |
|
| rs1196444628 | 327 | N>V | No | gnomAD | |
|
CA344034735 rs41314039 |
328 | I>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs757887582 | 328 | I>I | No |
ExAC gnomAD |
|
| rs910573647 | 328 | I>L | No |
TOPMed gnomAD |
|
| rs747546238 | 328 | I>P | No | Ensembl | |
|
rs2274367 CA344034749 |
329 | E>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| rs748441143 | 329 | E>L | No |
ExAC gnomAD |
|
|
CA344034752 rs1196444628 |
329 | E>V | No |
ClinGen gnomAD |
|
| rs148025707 | 330 | T>I | No |
ESP ExAC TOPMed gnomAD |
|
|
CA35889259 rs747546238 |
330 | T>P | No |
ClinGen Ensembl |
|
|
CA1314659 rs748441143 |
331 | F>L | No |
ClinGen ExAC gnomAD |
|
| rs1175166766 | 332 | T>V | No | TOPMed | |
| rs1457312106 | 335 | T>G | No | TOPMed | |
|
CA528298321 rs1367893170 |
336 | Q>K | No |
ClinGen gnomAD |
|
| rs1571866251 | 336 | Q>S | No | Ensembl | |
| rs745750519 | 337 | N>A | No |
ExAC gnomAD |
|
|
CA1314662 rs778005183 |
337 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1466660990 CA344034825 |
338 | I>V | No |
ClinGen TOPMed |
|
|
CA1314663 rs745750519 |
339 | T>A | No |
ClinGen ExAC gnomAD |
|
| rs1196757044 | 339 | T>I | No | TOPMed | |
| rs1478796698 | 339 | T>R | No | gnomAD | |
| rs1193789799 | 340 | Y>F | No |
TOPMed gnomAD |
|
| rs1193789799 | 340 | Y>I | No |
TOPMed gnomAD |
|
| rs1432514984 | 340 | Y>V | No | TOPMed | |
|
rs1196757044 CA344034847 |
341 | R>I | No |
ClinGen TOPMed |
|
| TCGA novel | 341 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1432514984 CA344034853 |
342 | F>V | No |
ClinGen TOPMed |
|
|
rs775327712 CA1314665 |
343 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1188651375 | 343 | Q>K | No | TOPMed | |
| rs1188651375 | 343 | Q>M | No | TOPMed | |
|
rs768391663 CA1314666 |
344 | C>G | No |
ClinGen ExAC gnomAD |
|
| rs866816038 | 345 | G>I | No | Ensembl | |
| rs753089742 | 345 | G>V | No |
ExAC TOPMed gnomAD |
|
| rs780174638 | 346 | N>G | No |
ExAC TOPMed gnomAD |
|
| rs763450807 | 346 | N>L | No |
ExAC gnomAD |
|
|
rs866816038 CA35889876 |
347 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs753089742 CA1314695 |
347 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314696 rs763450807 |
348 | I>L | No |
ClinGen ExAC gnomAD |
|
| rs79141749 | 349 | F>S | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs776508151 | 349 | F>S | No |
ExAC gnomAD |
|
| rs1405744947 | 350 | D>T | No | gnomAD | |
| rs1368901568 | 351 | N>L | No | gnomAD | |
|
CA344034940 rs1405744947 |
352 | K>T | No |
ClinGen gnomAD |
|
|
CA35889885 rs867776290 |
353 | E>A | No |
ClinGen TOPMed gnomAD |
|
| rs751785635 | 357 | E>V | No | ExAC | |
| rs762391496 | 359 | L>A | No |
ExAC TOPMed gnomAD |
|
|
rs751785635 CA1314698 RCV000481445 |
359 | L>V | No |
ClinGen ClinVar ExAC dbSNP |
|
| rs116464756 | 360 | E>V | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs781133917 | 362 | E>K | No |
ExAC gnomAD |
|
|
rs1289810255 CA344035065 |
363 | H>Q | No |
ClinGen TOPMed |
|
| rs1380213873 | 363 | H>T | No | TOPMed | |
|
CA1314700 rs781133917 |
364 | E>K | No |
ClinGen ExAC gnomAD |
|
| rs1399514174 | 366 | K>L | No | TOPMed | |
| TCGA novel | 367 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1333928530 | 370 | E>L | No |
TOPMed gnomAD |
|
|
rs999211601 CA35889910 |
371 | I>V | No |
ClinGen TOPMed |
|
| rs756498746 | 371 | I>Y | No |
ExAC gnomAD |
|
| rs1283847750 | 372 | L>R | No | gnomAD | |
| rs536162712 | 372 | L>S | No |
1000Genomes ExAC gnomAD |
|
|
CA1314705 rs771923388 |
373 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA344035210 rs1428550336 |
373 | Y>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs536162712 CA1314706 |
374 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| rs144856406 | 375 | N>N | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs144856406 | 375 | N>Y | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1466911164 CA344035259 |
376 | H>R | No |
ClinGen gnomAD |
|
| rs1200104864 | 377 | K>N | No | gnomAD | |
| rs1446430507 | 378 | F>I | No | TOPMed | |
| rs398122383 | 379 | T>E | No |
ExAC gnomAD |
|
|
rs1200104864 CA344035283 |
379 | T>N | No |
ClinGen gnomAD |
|
| rs776473656 | 380 | N>E | No |
ExAC TOPMed gnomAD |
|
| TCGA novel | 382 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA35889921 rs1039401360 |
382 | S>N | No |
ClinGen Ensembl |
|
| rs961295368 | 382 | S>R | No |
TOPMed gnomAD |
|
|
CA344035324 rs1370135148 |
383 | K>T | No |
ClinGen gnomAD |
|
|
CA344035345 rs1473079919 |
385 | I>T | No |
ClinGen gnomAD |
|
| rs141736078 | 388 | D>I | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs973848863 | 388 | D>P | No | TOPMed | |
| TCGA novel | 388 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs111324714 | 392 | P>H | No | Ensembl | |
|
rs1345142310 CA344035623 |
393 | G>V | No |
ClinGen gnomAD |
|
|
CA344035637 rs1571861601 |
394 | E>D | No |
ClinGen Ensembl |
|
|
rs749814938 CA1314732 |
394 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1553241686 | 394 | E>Y | No | Ensembl | |
| TCGA novel | 396 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs145357582 | 396 | Q>T | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs145357582 CA1314734 |
398 | I>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs200107066 | 399 | F>G | No |
1000Genomes ExAC gnomAD |
|
| rs774053060 | 401 | R>D | No |
ExAC TOPMed gnomAD |
|
|
CA1314736 rs200107066 |
401 | R>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344035749 rs1444834078 |
403 | E>K | No |
ClinGen gnomAD |
|
| rs773554356 | 403 | E>V | No |
ExAC gnomAD |
|
| rs1233081842 | 404 | A>S | No | TOPMed | |
| rs760733209 | 405 | A>H | No |
ExAC gnomAD |
|
|
CA1314737 rs773554356 |
405 | A>V | No |
ClinGen ExAC gnomAD |
|
| rs141099643 | 406 | H>Y | No |
ESP ExAC TOPMed gnomAD |
|
|
rs760733209 CA1314738 |
407 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA35891338 rs969521925 |
408 | G>A | No |
ClinGen Ensembl |
|
| rs1224679877 | 409 | V>A | No | gnomAD | |
| rs752565895 | 414 | P>K | No |
ExAC gnomAD |
|
|
rs370664534 CA1314739 |
415 | P>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA35891353 rs868480883 |
416 | Q>H | No |
ClinGen Ensembl |
|
|
CA1314740 rs752565895 |
416 | Q>K | No |
ClinGen ExAC gnomAD |
|
| rs1363071799 | 416 | Q>P | No | gnomAD | |
|
rs1363071799 CA344035935 |
418 | S>P | No |
ClinGen gnomAD |
|
| TCGA novel | 420 | H>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs6696162 | 421 | N>I | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs568942553 CA1314741 |
421 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| rs142046206 | 422 | F>F | No |
ESP ExAC TOPMed gnomAD |
|
| rs757143414 | 424 | L>C | No |
ExAC gnomAD |
|
|
rs142046206 CA1314743 |
424 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 424 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs757143414 CA1314744 |
426 | Y>C | No |
ClinGen ExAC gnomAD |
|
| rs755614890 | 427 | I>A | No |
ExAC TOPMed gnomAD |
|
|
CA1314745 rs780692784 |
427 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA1314747 rs755614890 |
429 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314746 rs745527713 |
429 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA344036157 rs1277551838 |
430 | T>I | No |
ClinGen gnomAD |
|
| rs140403368 | 431 | E>N | No |
ESP ExAC TOPMed gnomAD |
|
| rs536124035 | 431 | E>V | No |
1000Genomes ExAC gnomAD |
|
|
CA1314772 rs536124035 |
433 | D>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| rs1406436986 | 434 | C>D | No | gnomAD | |
|
CA344037182 rs1440434993 |
435 | L>F | No |
ClinGen gnomAD |
|
|
CA344037183 rs1176620686 |
435 | L>H | No |
ClinGen gnomAD |
|
| rs372250925 | 435 | L>M | No |
ESP ExAC gnomAD |
|
|
CA344037189 rs1406436986 |
436 | N>D | No |
ClinGen gnomAD |
|
| rs772260882 | 436 | N>E | No |
ExAC TOPMed gnomAD |
|
|
rs372250925 CA1314774 |
437 | L>M | No |
ClinGen ESP ExAC gnomAD |
|
|
rs772260882 CA344037222 |
438 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs375608198 | 439 | K>M | No |
ESP ExAC TOPMed gnomAD |
|
| rs1235335248 | 440 | N>S | No | TOPMed | |
| rs1235335248 | 440 | N>T | No | TOPMed | |
|
rs1323507987 CA344037271 |
442 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1235335248 CA344037266 |
442 | I>S | No |
ClinGen TOPMed |
|
|
CA344037268 rs1235335248 |
442 | I>T | No |
ClinGen TOPMed |
|
| TCGA novel | 449 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1571864910 | 450 | K>C | No | Ensembl | |
| rs771120252 | 451 | P>M | No |
ExAC TOPMed gnomAD |
|
| rs1297093496 | 451 | P>S | No | gnomAD | |
|
rs1571864910 CA344037412 |
452 | Y>C | No |
ClinGen Ensembl |
|
| rs759520877 | 452 | Y>I | No |
ExAC TOPMed gnomAD |
|
|
rs771120252 CA1314778 |
453 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA1314780 rs759520877 |
454 | K>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1389355995 | 455 | Y>F | No | TOPMed | |
| rs1173999476 | 456 | V>T | No | TOPMed | |
|
CA344037510 rs1389355995 |
457 | L>F | No |
ClinGen TOPMed |
|
|
rs774087579 CA1314782 |
458 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA344037517 rs1173999476 |
458 | S>T | No |
ClinGen TOPMed |
|
| TCGA novel | 460 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1314783 rs150366095 |
460 | H>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA344037596 rs1458336940 |
463 | I>V | No |
ClinGen gnomAD |
|
|
CA35893060 rs1014891412 |
464 | I>V | No |
ClinGen TOPMed gnomAD |
|
| rs1484547355 | 465 | A>M | No | gnomAD | |
| rs1417710516 | 467 | V>C | No | gnomAD | |
|
CA344037663 rs1484547355 |
467 | V>M | No |
ClinGen gnomAD |
|
|
rs1417710516 CA344037699 |
469 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1348367829 CA344037703 |
469 | R>H | No |
ClinGen TOPMed gnomAD |
|
| rs1274421382 | 470 | N>N | No | TOPMed | |
| rs148702806 | 470 | N>R | No |
1000Genomes TOPMed |
|
|
CA344037750 rs1274421382 |
472 | S>N | No |
ClinGen TOPMed |
|
|
CA35893079 rs148702806 |
472 | S>R | No |
ClinGen 1000Genomes TOPMed |
|
| rs1173201390 | 472 | S>T | No | gnomAD | |
| rs995052397 | 473 | A>R | No | Ensembl | |
| TCGA novel | 473 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344037782 rs1558018509 |
474 | A>E | No |
ClinGen Ensembl |
|
|
rs1173201390 CA344037771 |
474 | A>S | No |
ClinGen gnomAD |
|
|
CA344037774 rs1173201390 |
474 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| rs750217413 | 474 | A>Y | No |
ExAC gnomAD |
|
|
rs995052397 CA35893081 |
475 | M>R | No |
ClinGen Ensembl |
|
|
CA1314785 rs750217413 |
476 | C>Y | No |
ClinGen ExAC gnomAD |
|
| rs1410179985 | 478 | F>S | No | gnomAD | |
| rs61749266 | 479 | T>E | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1029540128 | 479 | T>R | No | TOPMed | |
| rs371081329 | 480 | T>C | No |
ESP ExAC gnomAD |
|
|
rs1410179985 CA344037868 |
480 | T>S | No |
ClinGen gnomAD |
|
|
rs1029540128 CA35893089 |
481 | K>R | No |
ClinGen TOPMed |
|
|
CA1314787 rs371081329 |
482 | S>C | No |
ClinGen ESP ExAC gnomAD |
|
| rs762144487 | 482 | S>S | No |
ExAC TOPMed gnomAD |
|
| TCGA novel | 483 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs200407298 | 484 | P>R | No |
ExAC TOPMed gnomAD |
|
|
rs762144487 CA1314788 |
484 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314807 rs759266994 |
486 | S>N | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 489 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs545961977 | 491 | M>I | No |
ExAC gnomAD |
|
|
rs757887582 CA1314810 |
491 | M>I | No |
ClinGen ExAC gnomAD |
|
| rs757549269 | 492 | T>T | No |
ExAC gnomAD |
|
|
rs757549269 CA1314813 |
494 | S>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 495 | M>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1175166766 CA344038794 |
495 | M>V | No |
ClinGen TOPMed |
|
| rs555467190 | 496 | T>E | No |
ExAC gnomAD |
|
|
rs1457312106 CA344038841 |
498 | D>G | No |
ClinGen TOPMed |
|
| rs756334751 | 498 | D>R | No |
ExAC gnomAD |
|
|
rs1571866251 CA344038854 |
499 | N>S | No |
ClinGen Ensembl |
|
|
rs756334751 CA1314816 |
500 | S>R | No |
ClinGen ExAC gnomAD |
|
| rs200974882 | 500 | S>Y | No | gnomAD | |
|
CA344038902 rs1478796698 |
502 | H>R | No |
ClinGen gnomAD |
|
|
rs200974882 CA35893536 |
502 | H>Y | No |
ClinGen gnomAD |
|
|
rs1193789799 CA344038917 |
503 | V>F | No |
ClinGen TOPMed gnomAD |
|
| rs867897766 | 505 | C>L | No | Ensembl | |
|
CA344038957 rs1188651375 |
506 | R>K | No |
ClinGen TOPMed |
|
|
CA344038960 rs1188651375 |
506 | R>M | No |
ClinGen TOPMed |
|
| rs749379347 | 507 | P>K | No |
ExAC gnomAD |
|
|
rs867897766 CA35893548 |
507 | P>L | No |
ClinGen Ensembl |
|
| rs768919403 | 507 | P>S | No |
ExAC gnomAD |
|
| rs1315889906 | 508 | P>G | No | gnomAD | |
| rs773229991 | 508 | P>N | No |
ExAC TOPMed gnomAD |
|
| rs746951007 | 509 | R>C | No |
ExAC TOPMed gnomAD |
|
|
CA1314817 rs780174638 |
509 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs770812820 | 509 | R>H | No |
ExAC TOPMed gnomAD |
|
|
rs749379347 CA1314818 |
509 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA1314819 rs768919403 |
509 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA344039013 rs1315889906 |
510 | D>G | No |
ClinGen gnomAD |
|
|
rs773229991 CA1314820 |
510 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 510 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1314822 rs770812820 |
511 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776508151 CA1314823 |
512 | N>S | No |
ClinGen ExAC gnomAD |
|
| rs1571866364 | 513 | G>Q | No | Ensembl | |
| rs759300201 | 514 | P>G | No |
ExAC gnomAD |
|
|
CA344039079 rs1368901568 |
514 | P>L | No |
ClinGen gnomAD |
|
| rs764913234 | 515 | H>H | No |
ExAC TOPMed gnomAD |
|
| rs764913234 | 515 | H>L | No |
ExAC TOPMed gnomAD |
|
|
rs1571866364 CA344039099 |
515 | H>Q | No |
ClinGen Ensembl |
|
| TCGA novel | 515 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759300201 CA1314824 |
516 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA1314826 rs764913234 |
517 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314825 rs764913234 |
517 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs1203819767 | 517 | R>R | No |
TOPMed gnomAD |
|
|
rs762391496 CA1314827 |
522 | V>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| rs904577980 | 523 | E>R | No | TOPMed | |
| rs1435298808 | 525 | G>I | No | TOPMed | |
|
rs904577980 CA35893568 |
525 | G>R | No |
ClinGen TOPMed |
|
| rs1213903585 | 525 | G>S | No |
TOPMed gnomAD |
|
| rs1399514174 | 527 | T>F | No | TOPMed | |
|
CA344039308 rs1435298808 |
527 | T>I | No |
ClinGen TOPMed |
|
|
CA344039303 rs1213903585 |
527 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA344039321 rs1399514174 |
529 | V>F | No |
ClinGen TOPMed |
|
| rs757782403 | 529 | V>H | No |
ExAC gnomAD |
|
|
rs1399514174 CA344039319 |
529 | V>L | No |
ClinGen TOPMed |
|
| rs892297670 | 531 | N>T | No |
TOPMed gnomAD |
|
| rs780306635 | 533 | S>E | No |
ExAC gnomAD |
|
|
rs892297670 CA35893582 |
533 | S>T | No |
ClinGen TOPMed gnomAD |
|
| rs1046297823 | 534 | H>H | No | TOPMed | |
|
rs756498746 CA1314833 |
534 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA1314834 rs780306635 |
535 | K>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 535 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344039425 rs1283847750 |
535 | K>R | No |
ClinGen gnomAD |
|
|
CA35893605 rs1046297823 |
536 | N>H | No |
ClinGen TOPMed |
|
| rs373995444 | 538 | D>C | No | ESP | |
| rs140422357 | 538 | D>H | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs144856406 CA1314837 |
538 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 539 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs398122383 | 540 | R>* | No |
ExAC gnomAD |
|
|
rs373995444 CA35893611 |
540 | R>C | No |
ClinGen ESP |
|
|
CA1314838 rs140422357 |
540 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1237473864 | 540 | R>N | No |
TOPMed gnomAD |
|
|
rs1446430507 CA344039525 |
541 | V>I | No |
ClinGen TOPMed |
|
| TCGA novel | 541 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1314839 rs398122383 |
542 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA344039551 rs1237473864 |
542 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
rs776473656 CA1314840 |
543 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs961295368 CA35893619 |
545 | Q>R | No |
ClinGen TOPMed gnomAD |
|
| rs145467564 | 546 | Y>A | No |
ESP ExAC TOPMed gnomAD |
|
| rs141736078 | 549 | D>N | No |
1000Genomes ExAC TOPMed gnomAD |
|
| rs141736078 | 549 | D>S | No |
1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 550 | Y>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1314844 rs141736078 |
551 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs141736078 CA1314845 |
551 | T>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA35893628 rs973848863 |
551 | T>P | No |
ClinGen TOPMed |
|
|
CA344039771 rs141736078 |
551 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| rs1187048060 | 552 | F>S | No | gnomAD | |
|
CA344040702 rs1187048060 |
554 | A>S | No |
ClinGen gnomAD |
|
|
rs111324714 CA35895253 |
555 | Y>H | No |
ClinGen Ensembl |
|
|
CA344040768 rs1553241686 |
557 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
| rs760244730 | 558 | N>N | No |
ExAC TOPMed gnomAD |
|
| rs749130052 | 560 | D>R | No |
ExAC gnomAD |
|
|
rs749130052 CA1314863 |
562 | P>R | No |
ClinGen ExAC gnomAD |
|
| rs761297445 | 563 | G>H | No |
ExAC TOPMed gnomAD |
|
|
CA1314865 rs774053060 |
564 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761297445 CA1314866 |
565 | P>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| rs1342798273 | 567 | I>R | No |
TOPMed gnomAD |
|
|
rs1233081842 CA344041053 |
567 | I>S | No |
ClinGen TOPMed |
|
| rs12136658 | 568 | L>Q | No |
1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1342798273 CA344041082 |
569 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1224679877 CA344041138 |
572 | T>A | No |
ClinGen gnomAD |
|
|
rs1232880849 CA344041448 |
576 | S>P | No |
ClinGen gnomAD |
|
| TCGA novel | 576 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1301167651 CA344041475 |
578 | A>S | No |
ClinGen gnomAD |
|
|
rs771574542 CA1314884 |
578 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs771312617 CA1314887 |
580 | I>R | No |
ClinGen ExAC gnomAD |
|
|
CA344041508 rs1253545148 |
580 | I>V | No |
ClinGen TOPMed |
|
|
rs1191758134 CA344041574 |
584 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
| TCGA novel | 585 | F>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344041581 rs1558026203 |
585 | F>L | No |
ClinGen Ensembl |
|
|
CA1314889 rs759967913 |
589 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs1317350264 CA344041665 |
590 | T>A | No |
ClinGen Ensembl |
|
|
rs775814368 CA1314891 |
591 | S>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 591 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs763104128 CA1314892 |
592 | I>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA35897361 rs1056876972 |
592 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
CA344041707 rs763104128 |
592 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344041702 rs1459728691 |
592 | I>V | No |
ClinGen gnomAD |
|
|
rs894658611 CA35897364 |
593 | A>V | No |
ClinGen TOPMed |
|
|
rs751560682 CA1314894 |
595 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs559763513 CA35897384 |
596 | V>A | No |
ClinGen Ensembl |
|
|
rs150416673 CA1314896 |
596 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs913617703 CA35897387 |
599 | Y>C | No |
ClinGen Ensembl |
|
|
CA35897389 rs111414217 |
602 | Y>H | No |
ClinGen gnomAD |
|
|
rs754699279 CA1314898 |
603 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs200838498 CA35897402 |
603 | D>N | No |
ClinGen 1000Genomes TOPMed |
|
|
rs778714061 CA1314899 |
605 | H>N | No |
ClinGen ExAC gnomAD |
|
|
CA344041959 rs1314941487 |
605 | H>P | No |
ClinGen TOPMed gnomAD |
|
|
CA344041961 rs1314941487 |
605 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1571875954 CA344042218 |
613 | D>N | No |
ClinGen Ensembl |
|
|
CA1314916 rs754933499 |
614 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA35897642 rs1055527772 |
615 | Q>* | No |
ClinGen Ensembl |
|
| TCGA novel | 617 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344042378 rs1257220764 |
619 | V>A | No |
ClinGen TOPMed gnomAD |
|
| rs772094735 | 622 | D>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs143761683 CA35898348 |
623 | D>N | No |
ClinGen Ensembl |
|
|
rs1263008575 CA344043673 |
624 | E>K | No |
ClinGen gnomAD |
|
|
CA1314936 rs773256126 |
626 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA1314937 rs760788576 |
628 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA1314938 rs760788576 |
628 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1455154652 CA344043864 |
630 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA344043923 rs1174214848 |
632 | P>S | No |
ClinGen gnomAD |
|
|
rs1461988340 CA344044040 |
635 | A>E | No |
ClinGen TOPMed |
|
|
rs147240717 CA35898363 |
636 | D>N | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs997103605 CA35898373 |
638 | L>F | No |
ClinGen Ensembl |
|
|
rs188500261 CA1314943 |
643 | K>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344044275 rs1262750110 |
644 | R>S | No |
ClinGen TOPMed |
|
|
CA344044293 rs1287241431 |
645 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA1314944 rs781031345 |
646 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA344044406 rs1467438457 |
648 | D>H | No |
ClinGen TOPMed |
|
|
CA1314946 rs755739844 |
649 | E>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 652 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs780363618 CA1314947 |
653 | F>C | No |
ClinGen ExAC gnomAD |
|
| rs1346325559 | 653 | F>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 654 | L>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs868698846 CA35898403 |
655 | A>T | No |
ClinGen gnomAD |
|
| TCGA novel | 656 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs724159905 CA35898416 |
658 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA35898754 rs955667806 |
659 | S>N | No |
ClinGen TOPMed |
|
|
rs755490983 CA1314968 |
661 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA344044985 rs755490983 |
661 | P>Q | No |
ClinGen ExAC gnomAD |
|
|
CA344045005 rs1420379983 |
663 | V>L | No |
ClinGen gnomAD |
|
|
CA344045067 rs1462134158 |
665 | S>C | No |
ClinGen gnomAD |
|
|
rs1164362432 CA344045093 |
665 | S>R | No |
ClinGen gnomAD |
|
|
rs914273938 CA35898766 |
666 | K>R | No |
ClinGen Ensembl |
|
|
CA35898767 rs932560948 |
667 | F>C | No |
ClinGen Ensembl |
|
|
CA344045147 rs1388692001 |
667 | F>L | No |
ClinGen gnomAD |
|
|
CA1314969 rs779332137 |
669 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344045191 rs779332137 |
669 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 673 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748511747 CA1314970 |
673 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA344045353 rs190742492 |
674 | K>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344045364 rs1558028673 |
675 | P>S | No |
ClinGen Ensembl |
|
|
rs1237012473 CA344045389 |
676 | F>L | No |
ClinGen TOPMed |
|
|
rs981861112 CA35898774 |
678 | Q>R | No |
ClinGen TOPMed |
|
|
CA1314973 rs747237754 |
679 | N>T | No |
ClinGen ExAC gnomAD |
|
|
rs866967402 CA35898787 |
681 | N>K | No |
ClinGen Ensembl |
|
|
rs770877340 CA1314974 |
681 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1272096027 CA344045526 |
683 | Y>H | No |
ClinGen gnomAD |
|
|
CA1314975 rs147515054 |
684 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA344045607 rs1437158895 |
687 | L>P | No |
ClinGen gnomAD |
|
|
rs1558028738 CA344045644 |
689 | Y>H | No |
ClinGen Ensembl |
|
|
rs1047743116 CA35898879 |
690 | D>G | No |
ClinGen TOPMed |
|
|
rs1349086882 CA344045779 |
691 | Y>C | No |
ClinGen TOPMed |
|
|
CA1314993 rs781335157 |
693 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745947898 CA1314994 |
694 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1003000820 CA35898889 |
696 | L>F | No |
ClinGen TOPMed |
|
|
rs1003000820 CA35898885 |
696 | L>I | No |
ClinGen TOPMed |
|
|
rs769776749 CA1314995 |
697 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA1314996 rs200818686 |
700 | N>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1448955102 CA344046023 |
701 | G>R | No |
ClinGen gnomAD |
|
|
CA1314997 rs372940886 |
702 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA35898900 rs772193588 |
703 | A>V | No |
ClinGen gnomAD |
|
|
rs771941224 CA1314998 |
705 | S>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1314999 rs771941224 |
705 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344046196 rs760430276 |
708 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315001 rs766053951 |
711 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759033254 CA1315003 |
712 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA344046354 rs1399662158 |
713 | I>M | No |
ClinGen gnomAD |
|
| TCGA novel | 714 | D>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 715 | G>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA35899609 rs148550226 |
717 | K>R | No |
ClinGen ESP |
|
|
rs1239416943 CA344047413 |
722 | Y>H | No |
ClinGen gnomAD |
|
|
rs770650182 CA1315020 |
724 | A>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 725 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA35899612 rs888138109 |
725 | A>V | No |
ClinGen gnomAD |
|
|
CA344047611 rs1476365376 |
728 | P>S | No |
ClinGen gnomAD |
|
|
CA344047700 rs1413986135 |
732 | T>A | No |
ClinGen gnomAD |
|
|
CA1315038 rs770916216 |
733 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315039 rs745727510 |
734 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745727510 CA1315040 |
734 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201711547 CA35899685 |
735 | D>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1558029970 CA344047771 |
735 | D>N | No |
ClinGen Ensembl |
|
|
rs201711547 CA1315041 |
735 | D>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1416321590 CA344047873 |
741 | W>C | No |
ClinGen gnomAD |
|
|
rs1186517033 CA344047875 |
742 | E>K | No |
ClinGen TOPMed |
|
|
CA35899713 rs1011811934 |
747 | V>F | No |
ClinGen TOPMed |
|
| TCGA novel | 749 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344048071 rs1464440498 |
751 | V>A | No |
ClinGen TOPMed |
|
| TCGA novel | 753 | R>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344048112 rs1558030034 |
753 | R>P | No |
ClinGen Ensembl |
|
|
CA344048118 rs1297770118 |
754 | C>R | No |
ClinGen gnomAD |
|
|
rs762248930 CA1315045 |
757 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1389586846 CA344048405 |
760 | N>S | No |
ClinGen gnomAD |
|
|
rs766855254 CA1315073 |
767 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1318618552 CA344048568 |
767 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs765547769 CA1315076 |
768 | S>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 771 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs758572135 CA344048683 |
771 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 772 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs755859528 CA1315082 |
774 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs755859528 CA1315081 |
774 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754554765 CA1315084 |
777 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA1315085 rs146726593 |
779 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs747600609 CA344048837 |
781 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 781 | V>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315086 rs747600609 |
781 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344048869 rs771626124 |
782 | K>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA1315088 rs773525497 |
783 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs773525497 CA344048877 |
783 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA344048903 rs1456885006 |
784 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA35900374 rs984623613 |
785 | Q>K | No |
ClinGen TOPMed gnomAD |
|
|
CA344048952 rs747550206 |
786 | H>D | No |
ClinGen ExAC gnomAD |
|
|
rs747550206 CA1315089 |
786 | H>Y | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 788 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771377149 CA344048997 |
788 | R>I | No |
ClinGen ExAC gnomAD |
|
|
rs771377149 CA1315090 |
788 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA35900388 rs754874718 |
790 | P>T | No |
ClinGen gnomAD |
|
|
rs760021216 CA1315092 |
791 | D>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs765375367 CA1315093 |
792 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs775791258 CA1315094 |
795 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs185420520 CA344049138 |
799 | I>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1390027243 CA344049143 |
799 | I>T | No |
ClinGen TOPMed |
|
|
rs185420520 CA1315096 |
799 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs750307063 CA1315097 |
800 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs766288126 CA1315118 |
802 | K>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 804 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315119 rs570434674 |
804 | E>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 806 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1390040376 CA344050065 |
808 | G>E | No |
ClinGen gnomAD |
|
|
rs868731512 CA35908538 |
808 | G>K | No |
ClinGen Ensembl |
|
|
CA344050082 rs1428289344 |
809 | R>I | No |
ClinGen gnomAD |
|
|
rs759187376 CA344050104 CA1315120 |
811 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315121 rs369548767 |
812 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs534640068 CA1315122 |
813 | H>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344050127 rs1380628774 |
813 | H>Y | No |
ClinGen TOPMed |
|
|
rs1284276363 CA344050153 |
814 | I>M | No |
ClinGen TOPMed |
|
|
rs758051506 CA1315123 |
820 | P>Q | No |
ClinGen ExAC gnomAD |
|
|
CA1315127 rs781735584 |
823 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs1457572280 CA344050346 |
824 | V>M | No |
ClinGen TOPMed |
|
|
CA344050402 rs746414371 |
829 | H>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746414371 CA344050401 |
829 | H>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1162634081 CA344050411 |
829 | H>Q | No |
ClinGen TOPMed |
|
|
rs746414371 CA1315128 |
829 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs998867545 CA35908637 |
834 | L>V | No |
ClinGen Ensembl |
|
|
CA344050468 rs1248023009 |
835 | R>T | No |
ClinGen gnomAD |
|
|
rs1175976011 CA344050518 |
838 | V>A | No |
ClinGen gnomAD |
|
|
rs768860842 CA1315132 |
839 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1320599780 CA344050564 |
842 | S>G | No |
ClinGen gnomAD |
|
|
rs373509702 CA344050573 |
842 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs143328050 CA1315137 |
843 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs868289664 CA35908707 |
848 | P>A | No |
ClinGen Ensembl |
|
|
rs868289664 CA35908710 |
848 | P>S | No |
ClinGen Ensembl |
|
|
rs753992254 CA35908729 |
849 | I>S | No |
ClinGen Ensembl |
|
|
rs762727020 CA1315140 |
850 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315183 rs766849638 |
857 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA1315185 rs755297330 |
859 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1182454664 CA344051095 |
860 | T>A | No |
ClinGen gnomAD |
|
|
CA1315186 rs779274312 |
862 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA35909086 rs934230097 |
864 | I>V | No |
ClinGen Ensembl |
|
|
CA1315188 rs758589060 |
865 | G>E | No |
ClinGen ExAC gnomAD |
|
| VAR_035654 | 865 | G>R | a breast cancer sample; somatic mutation [UniProt] | No | UniProt |
| TCGA novel | 868 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs868210193 CA35909092 |
868 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs747103347 CA1315190 |
869 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA344051167 rs1187953980 |
871 | E>V | No |
ClinGen TOPMed |
|
|
RCV000519751 rs768760266 CA1315194 |
876 | E>K | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
|
rs761763145 CA1315196 |
877 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA1315197 rs771742205 |
878 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA344051226 rs1408862921 |
880 | D>G | No |
ClinGen Ensembl |
|
|
rs1558034732 CA344051245 |
883 | G>D | No |
ClinGen Ensembl |
|
|
CA1315199 rs760163468 |
883 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA1315201 rs552482393 |
885 | V>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs765774003 CA1315203 |
890 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA35909181 rs777458591 |
891 | Q>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA35909189 rs724159906 |
897 | Q>* | No |
ClinGen Ensembl |
|
|
rs1391880702 CA344051351 |
899 | E>D | No |
ClinGen gnomAD |
|
|
CA1315205 rs758824419 |
899 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA1315227 rs752001828 |
900 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA1315228 rs757388260 COSM1222593 |
903 | I>L | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA344051386 rs757388260 |
903 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 907 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781540664 CA344051423 |
908 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs781540664 CA1315229 |
908 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344051426 rs1204008943 |
908 | A>V | No |
ClinGen TOPMed |
|
|
rs1201281140 CA344051431 |
909 | L>S | No |
ClinGen TOPMed gnomAD |
|
|
CA344051438 rs1269498153 |
910 | V>A | No |
ClinGen gnomAD |
|
|
rs370225108 CA35910658 |
913 | N>D | No |
ClinGen ESP TOPMed |
|
|
rs532932175 CA1315231 |
913 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 917 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1186661580 CA344051535 |
920 | V>G | No |
ClinGen Ensembl |
|
|
rs1479567432 CA344051597 |
925 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA35910673 rs955941415 |
926 | H>P | No |
ClinGen TOPMed gnomAD |
|
|
CA35910680 rs373417813 CA1315235 |
926 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA344051602 rs1161583439 |
926 | H>Y | No |
ClinGen gnomAD |
|
|
CA1315238 rs776327098 |
928 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA1315239 rs745328274 |
929 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA1315240 rs769300403 |
930 | H>P | No |
ClinGen ExAC gnomAD |
|
|
CA344051691 rs1289757315 |
932 | M>V | No |
ClinGen gnomAD |
|
|
rs1036138276 CA35910745 |
933 | K>Q | No |
ClinGen Ensembl |
|
|
rs1227230049 CA344051758 |
936 | D>V | No |
ClinGen gnomAD |
|
|
rs1356591636 CA344051766 |
937 | P>A | No |
ClinGen TOPMed |
|
|
CA344051765 rs1356591636 |
937 | P>T | No |
ClinGen TOPMed |
|
|
CA344051830 rs1453221446 |
941 | P>S | No |
ClinGen gnomAD |
|
|
rs1489778907 CA344051851 |
943 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1184620018 CA344051853 |
943 | P>L | No |
ClinGen gnomAD |
|
|
CA344051860 rs1179228310 |
944 | L>I | No |
ClinGen TOPMed |
|
|
rs566410564 CA35910760 |
948 | F>L | No |
ClinGen 1000Genomes |
|
|
rs762292865 CA1315245 |
949 | Q>H | No |
ClinGen ExAC |
|
|
rs1313856921 CA344052721 |
952 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1432087485 CA344052731 |
953 | S>L | No |
ClinGen gnomAD |
|
|
CA1315275 rs762015863 |
954 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs773518617 CA1315277 |
957 | W>L | No |
ClinGen ExAC |
|
|
CA1315276 rs768022867 |
957 | W>R | No |
ClinGen ExAC gnomAD |
|
|
rs1571892394 CA344052780 |
958 | R>G | No |
ClinGen Ensembl |
|
| TCGA novel | 960 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 960 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344052827 rs1314371588 |
964 | N>D | No |
ClinGen gnomAD |
|
|
rs1230390135 CA344052867 |
969 | K>E | No |
ClinGen gnomAD |
|
|
rs1187234089 CA344052900 |
973 | R>K | No |
ClinGen gnomAD |
|
| TCGA novel | 974 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315281 rs115365240 |
974 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1315283 rs763882896 |
978 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344052937 rs1443134472 |
978 | I>M | No |
ClinGen TOPMed gnomAD |
|
|
CA344052932 rs763882896 |
978 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315284 rs3208670 |
979 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1379051096 CA344052967 |
981 | D>G | No |
ClinGen gnomAD |
|
|
rs772754968 CA1315299 |
983 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA1315301 rs761188813 |
984 | R>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 986 | P>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344053004 rs1384155377 |
986 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA344053070 rs1325256245 |
991 | L>V | No |
ClinGen gnomAD |
|
|
rs1331421846 CA344053114 |
994 | S>N | No |
ClinGen gnomAD |
|
|
rs1223167076 CA344053124 |
995 | K>E | No |
ClinGen gnomAD |
|
|
CA344053148 rs1281539639 |
996 | E>D | No |
ClinGen gnomAD |
|
|
rs759469850 CA1315304 |
998 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1558038713 CA344053194 |
999 | H>P | No |
ClinGen Ensembl |
|
|
CA1315306 rs183414449 |
1000 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1485162890 CA344053208 |
1000 | D>V | No |
ClinGen gnomAD |
|
|
rs1268528022 CA344053225 |
1002 | D>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1268528022 CA344053223 |
1002 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA344053253 rs1558038744 |
1004 | S>T | No |
ClinGen Ensembl |
|
|
rs1451324443 CA344053287 |
1006 | D>E | No |
ClinGen gnomAD |
|
|
rs368408007 CA1315307 |
1007 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1473323403 CA344053312 |
1008 | D>E | No |
ClinGen gnomAD |
|
|
rs1426751800 CA344053308 |
1008 | D>G | No |
ClinGen gnomAD |
|
|
rs767506577 CA1315308 |
1012 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1287644160 CA344053356 |
1012 | E>Q | No |
ClinGen gnomAD |
|
|
rs750200877 CA1315309 |
1013 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755914577 CA1315310 |
1015 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1016 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1326536949 CA344053428 |
1017 | Y>F | No |
ClinGen gnomAD |
|
| TCGA novel | 1021 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344053483 rs1412205853 |
1021 | S>F | No |
ClinGen TOPMed |
|
| TCGA novel | 1021 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315352 rs759308256 |
1026 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs146768191 CA35915428 |
1027 | W>G | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs146768191 CA35915423 |
1027 | W>R | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA344053925 rs1558039439 |
1028 | K>N | No |
ClinGen Ensembl |
|
|
CA1315353 rs764886794 |
1032 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1435149327 CA344053958 |
1033 | I>T | No |
ClinGen gnomAD |
|
|
CA344053961 rs1406268326 |
1034 | A>T | No |
ClinGen gnomAD |
|
|
rs752405008 CA1315354 |
1034 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA344053973 rs1283424865 |
1036 | Q>* | No |
ClinGen gnomAD |
|
|
rs1468243929 CA344053983 |
1037 | G>E | No |
ClinGen gnomAD |
|
|
rs1390013254 CA344054002 |
1040 | K>M | No |
ClinGen gnomAD |
|
|
rs757944444 CA1315355 |
1040 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA344054011 rs1287465055 |
1041 | E>D | No |
ClinGen gnomAD |
|
|
rs200078132 CA1315356 |
1042 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315358 rs757755223 |
1043 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1044 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 1045 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs376600221 CA1315360 |
1048 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs756437273 CA1315361 |
1049 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1422687122 CA344054080 |
1051 | F>C | No |
ClinGen TOPMed |
|
|
CA344054078 rs1422687122 |
1051 | F>Y | No |
ClinGen TOPMed |
|
|
rs763015753 CA35915518 |
1052 | Q>P | No |
ClinGen Ensembl |
|
|
rs1571894603 CA344054098 |
1054 | K>E | No |
ClinGen Ensembl |
|
|
rs749532441 CA1315363 |
1055 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315365 rs774382417 |
1056 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA1315364 rs768913853 |
1056 | K>T | No |
ClinGen ExAC gnomAD |
|
|
rs1413469866 CA344054125 |
1058 | I>T | No |
ClinGen TOPMed |
|
|
CA344054141 rs1404990626 |
1060 | M>I | No |
ClinGen TOPMed |
|
|
CA1315367 rs770888148 |
1061 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs776447281 CA1315368 |
1062 | T>R | No |
ClinGen ExAC gnomAD |
|
|
CA344054153 rs1274597159 |
1063 | E>K | No |
ClinGen gnomAD |
|
|
rs893233686 CA344054173 |
1065 | K>N | No |
ClinGen TOPMed |
|
| TCGA novel | 1068 | D>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769904440 CA1315388 |
1071 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs1332346612 CA344054229 |
1072 | C>S | No |
ClinGen TOPMed |
|
|
rs190241405 CA1315392 |
1074 | Q>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 1074 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315391 rs768362013 |
1074 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA344054286 rs1356958968 |
1079 | G>V | No |
ClinGen gnomAD |
|
|
rs1407127879 CA344054287 |
1080 | K>Q | No |
ClinGen TOPMed |
|
|
rs1207569725 CA344054299 |
1081 | Q>R | No |
ClinGen gnomAD |
|
|
rs1437379406 CA344054320 |
1084 | G>E | No |
ClinGen gnomAD |
|
|
CA344054323 rs1426518506 |
1085 | D>N | No |
ClinGen gnomAD |
|
| TCGA novel | 1085 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315394 rs766956245 |
1086 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs540174573 CA344054343 CA1315396 |
1087 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA344054363 rs1183472769 |
1091 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs368690279 CA1315398 |
1092 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs984089455 CA344054382 |
1093 | T>K | No |
ClinGen gnomAD |
|
|
CA344054389 rs1169345578 |
1094 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs140384318 CA1315399 |
1095 | K>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA344054407 rs1184798264 |
1097 | S>L | No |
ClinGen TOPMed |
|
|
rs1462340448 CA344054411 |
1098 | T>A | No |
ClinGen TOPMed |
|
|
rs779041130 CA1315400 |
1099 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA35916862 rs951725063 |
1099 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs752896056 CA1315401 |
1101 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA1315403 rs777695549 |
1102 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344054466 rs769853264 |
1107 | R>K | No |
ClinGen ExAC TOPMed |
|
|
rs780202804 CA1315408 |
1107 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315407 rs769853264 |
1107 | R>T | No |
ClinGen ExAC TOPMed |
|
|
CA1315405 rs762735325 |
1107 | R>TI* | No |
ClinGen ExAC gnomAD |
|
|
rs749257364 CA1315426 |
1112 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA35917131 rs749257364 |
1112 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1113 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315427 rs755012251 |
1115 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs748041124 CA1315429 |
1117 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315430 rs771609153 |
1118 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA344054569 rs1190604034 |
1121 | Q>K | No |
ClinGen gnomAD |
|
|
CA1315431 rs772930520 |
1123 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs1455290898 CA344054612 |
1125 | W>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs112867533 CA35917173 |
1126 | S>G | No |
ClinGen ExAC |
|
|
rs112867533 CA1315433 |
1126 | S>R | No |
ClinGen ExAC |
|
|
rs777075968 CA1315434 |
1127 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315435 rs760015972 |
1128 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA1315436 rs765815787 |
1128 | E>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs267598281 CA35917202 |
1136 | E>K | No |
ClinGen TOPMed |
|
| TCGA novel | 1137 | L>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs549131091 CA1315441 |
1139 | S>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344054770 CA1315443 rs754959338 |
1140 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA344054761 rs750569053 |
1140 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1571896594 CA344054766 |
1140 | M>T | No |
ClinGen Ensembl |
|
|
CA1315442 rs750569053 |
1140 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1141 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA35917258 rs982132187 |
1141 | I>V | No |
ClinGen Ensembl |
|
|
rs758217317 CA1315446 |
1143 | V>D | No |
ClinGen ExAC gnomAD |
|
|
rs747839384 CA1315445 |
1143 | V>I | No |
ClinGen ExAC |
|
|
rs1481644951 CA344054815 |
1145 | K>R | No |
ClinGen TOPMed |
|
|
rs1198163582 CA344054843 |
1147 | K>N | No |
ClinGen gnomAD |
|
|
rs770621168 CA1315449 |
1149 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315450 rs776090857 |
1150 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1310666546 CA344054878 |
1151 | K>E | No |
ClinGen TOPMed |
|
| TCGA novel | 1151 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs724159907 CA35917301 |
1153 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs745452331 CA1315451 |
1154 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745452331 CA344054912 |
1154 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344054922 rs1558041011 RCV000757708 |
1155 | E>D | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA344054930 rs1363534312 |
1156 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA344054932 rs1363534312 |
1156 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA344054940 rs1451444401 |
1157 | N>S | No |
ClinGen gnomAD |
|
|
rs770192374 CA344054958 |
1158 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA35917354 rs959940059 |
1159 | H>Y | No |
ClinGen gnomAD |
|
|
rs1424267368 CA344054979 |
1160 | H>Q | No |
ClinGen gnomAD |
|
|
CA344054988 rs1248549146 |
1161 | K>R | No |
ClinGen gnomAD |
|
|
CA1315453 rs372398436 |
1163 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA35917370 rs946442343 |
1164 | P>R | No |
ClinGen Ensembl |
|
|
CA344055024 rs1392012289 |
1165 | L>P | No |
ClinGen gnomAD |
|
|
rs930970451 CA35917376 |
1166 | L>F | No |
ClinGen TOPMed |
|
|
CA344055045 rs1306960153 |
1167 | I>T | No |
ClinGen gnomAD |
|
|
CA344055054 rs1334500406 |
1168 | H>L | No |
ClinGen gnomAD |
|
|
rs1248695438 CA344055059 |
1169 | C>G | No |
ClinGen gnomAD |
|
|
rs1316182243 CA344055063 |
1169 | C>S | No |
ClinGen gnomAD |
|
| rs1421608327 | 1170 | R>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs199826421 CA1315478 |
1171 | D>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315479 rs762337291 |
1171 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA1315481 rs773582172 |
1176 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA344055265 rs1363009741 |
1178 | I>V | No |
ClinGen gnomAD |
|
|
CA344055290 rs191520732 |
1179 | F>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs554535702 CA35918643 |
1182 | L>V | No |
ClinGen Ensembl |
|
|
rs753903902 CA1315483 |
1183 | L>* | No |
ClinGen ExAC gnomAD |
|
|
rs1215167272 CA344055619 |
1184 | N>H | No |
ClinGen Ensembl |
|
|
rs1243668309 CA344055642 |
1187 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs751348881 CA1315486 |
1187 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA344055657 rs767698294 |
1189 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767698294 CA1315488 |
1189 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA35918691 rs938607366 |
1190 | E>A | No |
ClinGen Ensembl |
|
|
CA1315491 rs115935364 |
1190 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs769204527 CA1315493 |
1194 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA344055688 rs1413272292 |
1194 | V>L | No |
ClinGen gnomAD |
|
|
CA344055701 rs1325619408 |
1196 | D>G | No |
ClinGen TOPMed |
|
|
CA344055738 rs1412149187 |
1201 | V>A | No |
ClinGen gnomAD |
|
|
CA1315495 rs141995021 |
1204 | L>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs377490765 CA1315496 |
1205 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1315497 rs773528653 |
1205 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA344055760 rs773528653 |
1205 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344055774 rs1156522719 |
1207 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA1315498 rs760919067 |
1210 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776756536 CA1315500 |
1211 | M>L | No |
ClinGen ExAC gnomAD |
|
|
rs1471213861 CA344055796 |
1211 | M>T | No |
ClinGen TOPMed |
|
|
rs1317341495 CA344055802 |
1212 | V>F | No |
ClinGen gnomAD |
|
|
rs1426522308 CA344055806 |
1212 | V>G | No |
ClinGen TOPMed |
|
| rs1558042118 | 1215 | F>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759598627 CA1315501 |
1215 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA344055842 rs1445599939 |
1216 | E>A | No |
ClinGen gnomAD |
|
| TCGA novel | 1217 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773057370 CA1315529 |
1218 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs760393591 CA1315530 |
1219 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344055892 rs1445993458 |
1223 | D>H | No |
ClinGen gnomAD |
|
|
CA344055891 rs1445993458 |
1223 | D>N | No |
ClinGen gnomAD |
|
|
CA1315537 rs778207793 |
1225 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA1315536 rs758958726 |
1225 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1226 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1216486272 CA344055919 |
1227 | S>N | No |
ClinGen gnomAD |
|
|
CA35920620 rs899511250 |
1230 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 1231 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344055945 rs1197361177 |
1231 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs933679741 CA35920622 |
1234 | G>A | No |
ClinGen TOPMed |
|
|
CA1315540 rs781422394 |
1235 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1315542 rs746116164 |
1236 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA1315541 rs746116164 |
1236 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs749440246 CA1315544 |
1238 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1471609282 CA344055988 |
1238 | K>T | No |
ClinGen gnomAD |
|
|
rs1419641844 CA344056001 |
1240 | N>H | No |
ClinGen gnomAD |
|
| TCGA novel | 1241 | H>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344056011 rs1385316390 |
1241 | H>R | No |
ClinGen TOPMed |
|
|
CA1315548 rs760470495 |
1245 | K>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1246 | I>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs770664477 CA1315549 |
1246 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA35920679 rs887066233 |
1247 | E>K | No |
ClinGen Ensembl |
|
|
CA1315550 rs374678525 |
1249 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA344056068 rs374678525 |
1249 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1252371912 CA344056079 |
1250 | N>S | No |
ClinGen gnomAD |
|
|
rs765039278 CA1315552 |
1252 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA344056091 rs1317421071 |
1252 | V>M | No |
ClinGen gnomAD |
|
|
rs752249753 CA1315553 |
1253 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1324904119 CA344056100 |
1253 | D>V | No |
ClinGen gnomAD |
|
|
rs764602035 CA1315555 |
1257 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs757598062 CA344056133 |
1258 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs61757806 CA35920732 |
1259 | A>G | No |
ClinGen TOPMed |
|
|
rs756327552 CA1315560 |
1263 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1190861672 CA344056169 |
1263 | N>T | No |
ClinGen gnomAD |
|
| TCGA novel | 1265 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1558043475 CA344056189 |
1266 | G>A | No |
ClinGen Ensembl |
|
|
CA344056188 rs1558043475 |
1266 | G>D | No |
ClinGen Ensembl |
|
| TCGA novel | 1269 | E>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1315561 rs148487071 |
1270 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1315562 rs749310003 |
1270 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA35920784 rs969670354 |
1272 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
CA344056223 rs1558043497 |
1272 | P>T | No |
ClinGen Ensembl |
|
|
rs1319307238 CA344056248 |
1275 | K>N | No |
ClinGen gnomAD |
|
|
CA344056251 rs1340111706 |
1276 | E>Q | No |
ClinGen gnomAD |
|
|
rs1571900066 CA344056258 |
1277 | Q>K | No |
ClinGen Ensembl |
|
|
rs201641820 CA1315565 |
1278 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1200525905 CA344056270 |
1278 | A>V | No |
ClinGen TOPMed |
|
|
CA1315567 rs776554037 |
1280 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA344056283 rs776554037 |
1280 | G>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1283 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA344056299 rs1286358110 |
1283 | P>S | No |
ClinGen gnomAD |
|
|
rs762501047 CA344056306 |
1284 | T>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs2298872 CA344056308 |
1285 | S>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA35920832 rs968068509 |
1290 | P>S | No |
ClinGen Ensembl |
|
|
CA344056352 rs1351601014 |
1291 | E>D | No |
ClinGen gnomAD |
|
|
rs1375858966 CA344056354 |
1292 | H>D | No |
ClinGen gnomAD |
|
|
rs754595812 CA1315574 |
1295 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs754595812 CA35920841 |
1295 | N>T | No |
ClinGen ExAC gnomAD |
|
|
CA1315577 rs559731288 |
1296 | G>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA1315576 rs559731288 |
1296 | G>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs559731288 CA344056379 |
1296 | G>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344056382 rs1375227722 |
1296 | G>V | No |
ClinGen TOPMed |
|
|
CA1315578 rs780201643 |
1297 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA35920877 rs867215071 |
1298 | A>T | No |
ClinGen gnomAD |
|
|
CA344056397 rs977524211 |
1299 | S>I | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 1299 | S>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA35920880 rs977524211 |
1299 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs754092059 CA1315579 |
1299 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1338033198 CA344056405 |
1301 | A>T | No |
ClinGen gnomAD |
|
|
rs1571900219 CA344056410 |
1301 | A>V | No |
ClinGen Ensembl |
|
|
CA1315580 rs530292306 |
1304 | Q>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA344056432 rs1396534448 |
1304 | Q>H | No |
ClinGen TOPMed |
|
|
CA344056436 rs148331492 |
1305 | G>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs781277251 CA1315584 |
1306 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA344056443 rs1293460023 |
1307 | S>Q | No |
ClinGen TOPMed gnomAD |
2 associated diseases with P08575
[MIM: 608971]: Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-positive/NK-cell-positive (T(-)B(+)NK(+) SCID)
A form of severe combined immunodeficiency (SCID), a genetically and clinically heterogeneous group of rare congenital disorders characterized by impairment of both humoral and cell-mediated immunity, leukopenia, and low or absent antibody levels. Patients present in infancy recurrent, persistent infections by opportunistic organisms. The common characteristic of all types of SCID is absence of T-cell-mediated cellular immunity due to a defect in T-cell development. {ECO:0000269|PubMed:11145714}. Note=The disease is caused by variants affecting the gene represented in this entry.
[MIM: 126200]: Multiple sclerosis (MS)
A multifactorial, inflammatory, demyelinating disease of the central nervous system. Sclerotic lesions are characterized by perivascular infiltration of monocytes and lymphocytes and appear as indurated areas in pathologic specimens (sclerosis in plaques). The pathological mechanism is regarded as an autoimmune attack of the myelin sheath, mediated by both cellular and humoral immunity. Clinical manifestations include visual loss, extra-ocular movement disorders, paresthesias, loss of sensation, weakness, dysarthria, spasticity, ataxia and bladder dysfunction. Genetic and environmental factors influence susceptibility to the disease. {ECO:0000269|PubMed:11101853}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Without disease ID
- A form of severe combined immunodeficiency (SCID), a genetically and clinically heterogeneous group of rare congenital disorders characterized by impairment of both humoral and cell-mediated immunity, leukopenia, and low or absent antibody levels. Patients present in infancy recurrent, persistent infections by opportunistic organisms. The common characteristic of all types of SCID is absence of T-cell-mediated cellular immunity due to a defect in T-cell development. {ECO:0000269|PubMed:11145714}. Note=The disease is caused by variants affecting the gene represented in this entry.
- A multifactorial, inflammatory, demyelinating disease of the central nervous system. Sclerotic lesions are characterized by perivascular infiltration of monocytes and lymphocytes and appear as indurated areas in pathologic specimens (sclerosis in plaques). The pathological mechanism is regarded as an autoimmune attack of the myelin sheath, mediated by both cellular and humoral immunity. Clinical manifestations include visual loss, extra-ocular movement disorders, paresthesias, loss of sensation, weakness, dysarthria, spasticity, ataxia and bladder dysfunction. Genetic and environmental factors influence susceptibility to the disease. {ECO:0000269|PubMed:11101853}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
10 regional properties for P08575
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Tyrosine-specific protein phosphatase, PTPase domain | 652 - 914 | IPR000242-1 |
| domain | Tyrosine-specific protein phosphatase, PTPase domain | 943 - 1230 | IPR000242-2 |
| domain | Tyrosine-specific protein phosphatases domain | 832 - 903 | IPR000387-1 |
| domain | Tyrosine-specific protein phosphatases domain | 1135 - 1219 | IPR000387-2 |
| domain | Protein-tyrosine phosphatase, catalytic | 810 - 911 | IPR003595-1 |
| domain | Protein-tyrosine phosphatase, catalytic | 1116 - 1227 | IPR003595-2 |
| domain | Fibronectin type III | 391 - 483 | IPR003961-1 |
| domain | Fibronectin type III | 484 - 576 | IPR003961-2 |
| active_site | Protein-tyrosine phosphatase, active site | 851 - 861 | IPR016130 |
| domain | Protein tyrosine phosphatase, receptor type, N-terminal | 7 - 32 | IPR024739 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.1.3.48 | Phosphoric monoester hydrolases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
13 GO annotations of cellular component
| Name | Definition |
|---|---|
| bleb | A cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Blebs are formed during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses. [GOC:mtg_apoptosis, PMID:12083798, PMID:16624291, Wikipedia:Bleb_(cell_biology)] |
| cell surface | The external part of the cell wall and/or plasma membrane. |
| cytoplasmic side of plasma membrane | The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface. |
| external side of plasma membrane | The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| focal adhesion | A cell-substrate junction that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. In insects focal adhesion has also been referred to as hemi-adherens junction (HAJ). |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| membrane microdomain | A membrane region with a lipid composition that is distinct from that of the membrane regions that surround it. |
| membrane raft | Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| secretory granule membrane | The lipid bilayer surrounding a secretory granule. |
8 GO annotations of molecular function
| Name | Definition |
|---|---|
| ankyrin binding | Binding to ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins. |
| heparan sulfate proteoglycan binding | Binding to a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit. |
| heparin binding | Binding to heparin, a member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. |
| protein kinase binding | Binding to a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate. |
| protein tyrosine phosphatase activity | Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. |
| signaling receptor binding | Binding to one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. |
| spectrin binding | Binding to spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers. |
| transmembrane receptor protein tyrosine phosphatase activity | Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate. |
67 GO annotations of biological process
| Name | Definition |
|---|---|
| alpha-beta T cell proliferation | The expansion of an alpha-beta T cell population by cell division. |
| B cell differentiation | The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity. |
| B cell proliferation | The expansion of a B cell population by cell division. Follows B cell activation. |
| B cell receptor signaling pathway | The series of molecular signals initiated by the cross-linking of an antigen receptor on a B cell. |
| bone marrow development | The process whose specific outcome is the progression of the bone marrow over time, from its formation to the mature structure. |
| calcium-mediated signaling using intracellular calcium source | The series of molecular signals in which a cell uses calcium ions released from an intracellular store to convert a signal into a response. |
| cell cycle phase transition | The cell cycle process by which a cell commits to entering the next cell cycle phase. |
| cell surface receptor signaling pathway | The series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. |
| cellular response to extracellular stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. |
| defense response to virus | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. |
| dephosphorylation | The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. |
| DN2 thymocyte differentiation | The process in which a relatively unspecialized cell acquires the specialized features of a DN2 thymocyte. A DN2 thymocyte is a CD4-,CD8- thymocyte that is also CD44+,CD25-. |
| extrinsic apoptotic signaling pathway | The series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with either a ligand binding to a cell surface receptor, or a ligand being withdrawn from a cell surface receptor (e.g. in the case of signaling by dependence receptors), and ends when the execution phase of apoptosis is triggered. |
| gamma-delta T cell differentiation | The process in which a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell. A gamma-delta T cell is a T cell that expresses a gamma-delta T cell receptor complex. |
| hematopoietic progenitor cell differentiation | The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells. |
| heterotypic cell-cell adhesion | The attachment of a cell to a cell of a different type via adhesion molecules. |
| leukocyte cell-cell adhesion | The attachment of a leukocyte to another cell via adhesion molecules. |
| MAPK cascade | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain an additional tiers: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell. |
| natural killer cell differentiation | The process in which a relatively unspecialized cell acquires the specialized features of a natural killer cell. |
| negative regulation of cell adhesion involved in substrate-bound cell migration | The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction. |
| negative regulation of cytokine-mediated signaling pathway | Any process that stops, prevents, or reduces the frequency, rate or extent of the cytokine mediated signaling pathway. |
| negative regulation of ERK1 and ERK2 cascade | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. |
| negative regulation of interleukin-2 production | Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-2 production. |
| negative regulation of microglial cell activation | Any process that stops, prevents or reduces the frequency, rate or extent of microglial cell activation. |
| negative regulation of protein autophosphorylation | Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues. |
| negative regulation of protein kinase activity | Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity. |
| negative regulation of protein tyrosine kinase activity | Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity. |
| negative regulation of T cell mediated cytotoxicity | Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity. |
| negative thymic T cell selection | The process of elimination of immature T cells in the thymus which react strongly with self-antigens. |
| peptidyl-tyrosine phosphorylation | The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. |
| plasma membrane raft distribution | The process that establishes the spatial arrangement of membrane rafts within a plasma membrane. |
| positive regulation of alpha-beta T cell proliferation | Any process that activates or increases the frequency, rate or extent of alpha-beta T cell proliferation. |
| positive regulation of antigen receptor-mediated signaling pathway | Any process that activates or increases the frequency, rate or extent of signaling pathways initiated by the cross-linking of an antigen receptor on a B- or T cell. |
| positive regulation of B cell proliferation | Any process that activates or increases the rate or extent of B cell proliferation. |
| positive regulation of ERK1 and ERK2 cascade | Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade. |
| positive regulation of extrinsic apoptotic signaling pathway | Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway. |
| positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis | Any process that activates or increases the frequency, rate or extent of Fc-gamma receptor signaling pathway involved in phagocytosis. |
| positive regulation of gamma-delta T cell differentiation | Any process that activates or increases the frequency, rate or extent of gamma-delta T cell differentiation. |
| positive regulation of hematopoietic stem cell migration | Any process that activates or increases the frequency, rate or extent of hematopoietic stem cell migration. |
| positive regulation of humoral immune response mediated by circulating immunoglobulin | Any process that activates or increases the frequency, rate, or extent of a humoral immune response mediated by circulating immunoglobulin. |
| positive regulation of immunoglobulin production | Any process that activates or increases the frequency, rate, or extent of immunoglobulin production. |
| positive regulation of interleukin-2 production | Any process that activates or increases the frequency, rate, or extent of interleukin-2 production. |
| positive regulation of isotype switching to IgG isotypes | Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes. |
| positive regulation of MAP kinase activity | Any process that activates or increases the frequency, rate or extent of MAP kinase activity. |
| positive regulation of MAPK cascade | Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade. |
| positive regulation of peptidyl-tyrosine phosphorylation | Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. |
| positive regulation of protein kinase activity | Any process that activates or increases the frequency, rate or extent of protein kinase activity. |
| positive regulation of protein tyrosine phosphatase activity | Any process that activates or increases the frequency, rate or extent of protein tyrosine phosphatase activity. |
| positive regulation of stem cell proliferation | Any process that activates or increases the frequency, rate or extent of stem cell proliferation. |
| positive regulation of T cell mediated cytotoxicity | Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity. |
| positive regulation of T cell proliferation | Any process that activates or increases the rate or extent of T cell proliferation. |
| positive regulation of tumor necrosis factor production | Any process that activates or increases the frequency, rate or extent of tumor necrosis factor production. |
| positive thymic T cell selection | The process of sparing immature T cells in the thymus which react with self-MHC protein complexes with low affinity levels from apoptotic death. |
| protein autophosphorylation | The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation). |
| protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
| regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
| regulation of gene expression | Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| regulation of interleukin-8 production | Any process that modulates the frequency, rate, or extent of interleukin-8 production. |
| regulation of phagocytosis | Any process that modulates the frequency, rate or extent of phagocytosis, the process in which phagocytes engulf external particulate material. |
| regulation of protein tyrosine kinase activity | Any process that modulates the rate, frequency, or extent of protein tyrosine kinase activity. |
| regulation of receptor signaling pathway via JAK-STAT | Any process that modulates the frequency, rate or extent of receptor signaling via JAK-STAT. |
| release of sequestered calcium ion into cytosol | The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the cytosolic compartment. |
| response to gamma radiation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. |
| stem cell development | The process whose specific outcome is the progression of the stem cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to its specific fate. |
| T cell activation | The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific. |
| T cell differentiation | The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex. |
| T cell receptor signaling pathway | The series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell. |
10 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P25044 | PTP1 | Tyrosine-protein phosphatase 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P43378 | PTPN9 | Tyrosine-protein phosphatase non-receptor type 9 | Homo sapiens (Human) | PR |
| P28827 | PTPRM | Receptor-type tyrosine-protein phosphatase mu | Homo sapiens (Human) | PR |
| Q15262 | PTPRK | Receptor-type tyrosine-protein phosphatase kappa | Homo sapiens (Human) | PR |
| P10586 | PTPRF | Receptor-type tyrosine-protein phosphatase F | Homo sapiens (Human) | PR |
| P23468 | PTPRD | Receptor-type tyrosine-protein phosphatase delta | Homo sapiens (Human) | PR |
| Q13332 | PTPRS | Receptor-type tyrosine-protein phosphatase S | Homo sapiens (Human) | PR |
| Q64487 | Ptprd | Receptor-type tyrosine-protein phosphatase delta | Mus musculus (Mouse) | PR |
| P35822 | Ptprk | Receptor-type tyrosine-protein phosphatase kappa | Mus musculus (Mouse) | PR |
| P49446 | Ptpre | Receptor-type tyrosine-protein phosphatase epsilon | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MTMYLWLKLL | AFGFAFLDTE | VFVTGQSPTP | SPTGLTTAKM | PSVPLSSDPL | PTHTTAFSPA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| STFERENDFS | ETTTSLSPDN | TSTQVSPDSL | DNASAFNTTG | VSSVQTPHLP | THADSQTPSA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GTDTQTFSGS | AANAKLNPTP | GSNAISDVPG | ERSTASTFPT | DPVSPLTTTL | SLAHHSSAAL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PARTSNTTIT | ANTSDAYLNA | SETTTLSPSG | SAVISTTTIA | TTPSKPTCDE | KYANITVDYL |
| 250 | 260 | 270 | 280 | 290 | 300 |
| YNKETKLFTA | KLNVNENVEC | GNNTCTNNEV | HNLTECKNAS | VSISHNSCTA | PDKTLILDVP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PGVEKFQLHD | CTQVEKADTT | ICLKWKNIET | FTCDTQNITY | RFQCGNMIFD | NKEIKLENLE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PEHEYKCDSE | ILYNNHKFTN | ASKIIKTDFG | SPGEPQIIFC | RSEAAHQGVI | TWNPPQRSFH |
| 430 | 440 | 450 | 460 | 470 | 480 |
| NFTLCYIKET | EKDCLNLDKN | LIKYDLQNLK | PYTKYVLSLH | AYIIAKVQRN | GSAAMCHFTT |
| 490 | 500 | 510 | 520 | 530 | 540 |
| KSAPPSQVWN | MTVSMTSDNS | MHVKCRPPRD | RNGPHERYHL | EVEAGNTLVR | NESHKNCDFR |
| 550 | 560 | 570 | 580 | 590 | 600 |
| VKDLQYSTDY | TFKAYFHNGD | YPGEPFILHH | STSYNSKALI | AFLAFLIIVT | SIALLVVLYK |
| 610 | 620 | 630 | 640 | 650 | 660 |
| IYDLHKKRSC | NLDEQQELVE | RDDEKQLMNV | EPIHADILLE | TYKRKIADEG | RLFLAEFQSI |
| 670 | 680 | 690 | 700 | 710 | 720 |
| PRVFSKFPIK | EARKPFNQNK | NRYVDILPYD | YNRVELSEIN | GDAGSNYINA | SYIDGFKEPR |
| 730 | 740 | 750 | 760 | 770 | 780 |
| KYIAAQGPRD | ETVDDFWRMI | WEQKATVIVM | VTRCEEGNRN | KCAEYWPSME | EGTRAFGDVV |
| 790 | 800 | 810 | 820 | 830 | 840 |
| VKINQHKRCP | DYIIQKLNIV | NKKEKATGRE | VTHIQFTSWP | DHGVPEDPHL | LLKLRRRVNA |
| 850 | 860 | 870 | 880 | 890 | 900 |
| FSNFFSGPIV | VHCSAGVGRT | GTYIGIDAML | EGLEAENKVD | VYGYVVKLRR | QRCLMVQVEA |
| 910 | 920 | 930 | 940 | 950 | 960 |
| QYILIHQALV | EYNQFGETEV | NLSELHPYLH | NMKKRDPPSE | PSPLEAEFQR | LPSYRSWRTQ |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| HIGNQEENKS | KNRNSNVIPY | DYNRVPLKHE | LEMSKESEHD | SDESSDDDSD | SEEPSKYINA |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| SFIMSYWKPE | VMIAAQGPLK | ETIGDFWQMI | FQRKVKVIVM | LTELKHGDQE | ICAQYWGEGK |
| 1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
| QTYGDIEVDL | KDTDKSSTYT | LRVFELRHSK | RKDSRTVYQY | QYTNWSVEQL | PAEPKELISM |
| 1150 | 1160 | 1170 | 1180 | 1190 | 1200 |
| IQVVKQKLPQ | KNSSEGNKHH | KSTPLLIHCR | DGSQQTGIFC | ALLNLLESAE | TEEVVDIFQV |
| 1210 | 1220 | 1230 | 1240 | 1250 | 1260 |
| VKALRKARPG | MVSTFEQYQF | LYDVIASTYP | AQNGQVKKNN | HQEDKIEFDN | EVDKVKQDAN |
| 1270 | 1280 | 1290 | 1300 | ||
| CVNPLGAPEK | LPEAKEQAEG | SEPTSGTEGP | EHSVNGPASP | ALNQGS |