Q93VI3
Gene name |
RPL17A (At1g27400, F17L21.19) |
Protein name |
60S ribosomal protein L17-1 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G27400 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q93VI3
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q93VI3-F1 | Predicted | AlphaFoldDB |
11 variants for Q93VI3
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_9516035_A_T | 38 | K>M | No | 1000Genomes | |
| ENSVATH00046635 | 46 | R>M | No | 1000Genomes | |
| tmp_1_9516072_T_A | 50 | D>E | No | 1000Genomes | |
| ENSVATH04651694 | 57 | A>S | No | 1000Genomes | |
| tmp_1_9516140_C_G | 73 | A>G | No | 1000Genomes | |
| ENSVATH12138798 | 96 | L>I | No | 1000Genomes | |
| tmp_1_9516229_G_T | 103 | A>S | No | 1000Genomes | |
| tmp_1_9516340_G_A | 112 | A>T | No | 1000Genomes | |
| tmp_1_9516551_C_T | 152 | S>L | No | 1000Genomes | |
| ENSVATH00046641 | 174 | A>G | No | 1000Genomes | |
| ENSVATH00046641 | 174 | A>V | No | 1000Genomes |
No associated diseases with Q93VI3
1 regional properties for Q93VI3
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | Ribosomal protein L22/L17, conserved site | 127 - 151 | IPR018260 |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| plant-type vacuole | A closed structure that is completely surrounded by a unit membrane, contains liquid, and retains the same shape regardless of cell cycle phase. An example of this structure is found in Arabidopsis thaliana. |
| plasmodesma | A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. |
| vacuole | A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| cytoplasmic translation | The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. |
9 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P46990 | RPL17B | 60S ribosomal protein L17-B | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P05740 | RPL17A | 60S ribosomal protein L17-A | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q3T025 | RPL17 | 60S ribosomal protein L17 | Bos taurus (Bovine) | PR |
| Q5XTY7 | RPL17 | 60S ribosomal protein L17 | Felis catus (Cat) (Felis silvestris catus) | PR |
| Q9W3W8 | RpL17 | 60S ribosomal protein L17 | Drosophila melanogaster (Fruit fly) | PR |
| P18621 | RPL17 | 60S ribosomal protein L17 | Homo sapiens (Human) | PR |
| P24049 | Rpl17 | 60S ribosomal protein L17 | Rattus norvegicus (Rat) | PR |
| Q5UAS2 | RpL17 | 60S ribosomal protein L17 | Bombyx mori (Silk moth) | PR |
| P51413 | RPL17B | 60S ribosomal protein L17-2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVKYSQEPDN | ITKSCKARGA | DLRVHFKNTR | ETAHAIRKLP | LNKAKRYLED | VIAHKQAIPF |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TRFCRGVGRT | AQAKNRHSNG | QGRWPAKSAQ | FVLDLLKNAE | SNAEVKGLDV | DALFISHIQV |
| 130 | 140 | 150 | 160 | 170 | |
| NQAAKQRRRT | YRAHGRINPY | MSNPCHIELI | LSEKEEPVKK | EPETQLAAKS | KKGASS |