P51413
Gene name |
RPL17B (At1g67430, T1F15.11) |
Protein name |
60S ribosomal protein L17-2 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G67430 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for P51413
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-P51413-F1 | Predicted | AlphaFoldDB |
4 variants for P51413
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_25263098_G_A | 89 | A>T | No | 1000Genomes | |
| tmp_1_25263260_C_T | 112 | A>V | No | 1000Genomes | |
| tmp_1_25263481_G_A | 158 | V>I | No | 1000Genomes | |
| tmp_1_25263583_C_A | 162 | P>T | No | 1000Genomes |
No associated diseases with P51413
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
| cytosolic ribosome | A ribosome located in the cytosol. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| plasmodesma | A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. |
| polysomal ribosome | A ribosome bound to mRNA that forms part of a polysome. |
| vacuole | A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| cytoplasmic translation | The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. |
9 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P46990 | RPL17B | 60S ribosomal protein L17-B | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P05740 | RPL17A | 60S ribosomal protein L17-A | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q3T025 | RPL17 | 60S ribosomal protein L17 | Bos taurus (Bovine) | PR |
| Q5XTY7 | RPL17 | 60S ribosomal protein L17 | Felis catus (Cat) (Felis silvestris catus) | PR |
| Q9W3W8 | RpL17 | 60S ribosomal protein L17 | Drosophila melanogaster (Fruit fly) | PR |
| P18621 | RPL17 | 60S ribosomal protein L17 | Homo sapiens (Human) | PR |
| P24049 | Rpl17 | 60S ribosomal protein L17 | Rattus norvegicus (Rat) | PR |
| Q5UAS2 | RpL17 | 60S ribosomal protein L17 | Bombyx mori (Silk moth) | PR |
| Q93VI3 | RPL17A | 60S ribosomal protein L17-1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MVKYSQEPDN | QTKSCKARGS | DLRVHFKNTR | ETAHAIRKLP | LIKAKRYLED | VIAHKQAIPF |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TRFCRGVGRT | AQAKNRHSNG | QGRWPAKSAQ | FVLDLLKNAE | SNAEVKGLDV | DALFISHIQV |
| 130 | 140 | 150 | 160 | 170 | |
| NQAAKQRRRT | YRAHGRINPY | MSNPCHIELI | LSEKEEPVKK | EPETQLAAKS | KKSAA |