Q5RIC0
Gene name |
elp3 |
Protein name |
Elongator complex protein 3 |
Names |
tRNA uridine(34) acetyltransferase |
Species |
Danio rerio (Zebrafish) (Brachydanio rerio) |
KEGG Pathway |
dre:541509 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q5RIC0
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q5RIC0-F1 | Predicted | AlphaFoldDB |
No variants for Q5RIC0
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q5RIC0 | |||||
No associated diseases with Q5RIC0
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| elongator holoenzyme complex | A heterohexameric protein complex composed two discrete heterotrimeric subcomplexes that is involved in modification of wobble nucleosides in tRNA. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| 4 iron, 4 sulfur cluster binding | Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| metal ion binding | Binding to a metal ion. |
| phosphorylase kinase regulator activity | Modulation of the activity of the enzyme phosphorylase kinase. |
| tRNA binding | Binding to a transfer RNA. |
| tRNA uridine(34) acetyltransferase activity | Catalysis of the reaction: acetyl-CoA + H2O + S-adenosyl-L-methionine + uridine(34) in tRNA = 5'-deoxyadenosine + carboxymethyluridine(34) in tRNA + CoA + 2 H(+) + L-methionine. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| axonogenesis | De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| somite development | The progression of a somite from its initial formation to the mature structure. Somites are mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo. |
| tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation | The process whereby a wobble base uridine residue in a tRNA is modified to 5-methoxycarbonylmethyl-2-thiouridine. |
| tRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. |
8 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q02908 | ELP3 | Elongator complex protein 3 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q2KJ61 | ELP3 | Elongator complex protein 3 | Bos taurus (Bovine) | PR |
| Q5ZHS1 | ELP3 | Elongator complex protein 3 | Gallus gallus (Chicken) | PR |
| Q9H9T3 | ELP3 | Elongator complex protein 3 | Homo sapiens (Human) | PR |
| Q9CZX0 | Elp3 | Elongator complex protein 3 | Mus musculus (Mouse) | PR |
| Q7X7L3 | ELP3 | Elongator complex protein 3 | Oryza sativa subsp japonica (Rice) | PR |
| Q93ZR1 | HAG3 | Elongator complex protein 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q6NVL5 | elp3 | Elongator complex protein 3 | Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGKPKKKSDL | SRAELMMMTI | ADVIKQLVEA | HEEGKDINLN | KVKTKTSAKY | GLSAQPRLVD |
| 70 | 80 | 90 | 100 | 110 | 120 |
| IIAAVPPHYR | RALVPKLKAK | PIRTASGIAV | VAVMCKPHRC | PHISFTGNIC | VYCPGGPDSD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| FEYSTQSYTG | YEPTSMRAIR | ARYDPYLQTR | HRVEQLKQLG | HSVDKVEFIV | MGGTFMALPE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EYRDYFIRNL | HDALSGHTSN | NVTEAVRYSE | RSNTKCVGIT | IETRPDYCLK | RHLSDMLGYG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| CTRLEIGVQS | VYEDVARDTN | RGHTVRAVCE | SFHLAKDAGF | KVVAHMMPDL | PNVGMERDVE |
| 310 | 320 | 330 | 340 | 350 | 360 |
| QFIEFFENPA | FRPDGLKLYP | TLVIRGTGLY | ELWKTGRYKS | YSPSALVDLV | ARILALVPPW |
| 370 | 380 | 390 | 400 | 410 | 420 |
| TRVYRVQRDI | PMPLVSSGVE | HGNLRELALA | RMKDMGTECR | DVRTREVGIQ | EIHHKVRPYQ |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VELIRRDYVA | NGGWETFLSY | EDPEQDILIG | LLRLRRCSPQ | SFRPELKGGV | SIVRELHVYG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SVVPVSSRDP | SKFQHQGFGM | MLMEEAERIA | RDEHGSSKLA | VISGVGTRNY | YRKMGYELEG |
| PYMVKNLY |