Q13207
Gene name |
TBX2 |
Protein name |
T-box transcription factor TBX2 |
Names |
T-box protein 2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:6909 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q13207
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q13207-F1 | Predicted | AlphaFoldDB |
635 variants for Q13207
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA400469508 RCV000625998 VAR_081780 rs1364709483 RCV000723359 |
20 | R>Q | Vertebral anomalies and variable endocrine and T-cell dysfunction VETD; unknown pathological significance; decreased transcriptional regulatory activity; no effect on localization to the nucleus [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
RCV001257454 rs2060258573 |
37 | F>C | Vertebral anomalies and variable endocrine and T-cell dysfunction [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1555877071 RCV000624455 VAR_081781 RCV000723360 CA400473087 |
305 | R>H | Vertebral anomalies and variable endocrine and T-cell dysfunction Variant assessed as Somatic; impact. Inborn genetic diseases VETD; de novo variant; decreased transcriptional regulatory activity; no effect on localization to the nucleus [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
rs1198462287 RCV001329511 CA400474123 |
432 | K>R | Vertebral anomalies and variable endocrine and T-cell dysfunction [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
RCV001252869 rs763593217 CA8689436 |
593 | T>N | Microcephaly [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA8689019 rs754766050 |
4 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1179281640 CA400469392 |
4 | P>S | No |
ClinGen TOPMed |
|
|
rs1291228442 CA400469397 |
5 | A>E | No |
ClinGen gnomAD |
|
|
CA8689020 rs781121351 |
5 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292237393 rs1031446573 |
6 | L>R | No |
ClinGen TOPMed |
|
|
CA292237400 rs1057976 |
7 | A>T | No |
ClinGen TOPMed |
|
|
CA400469408 rs1458507909 |
7 | A>V | No |
ClinGen gnomAD |
|
|
CA400469411 rs1246452882 |
8 | A>P | No |
ClinGen gnomAD |
|
|
CA400469409 rs1246452882 |
8 | A>S | No |
ClinGen gnomAD |
|
|
CA400469410 rs1246452882 |
8 | A>T | No |
ClinGen gnomAD |
|
|
rs748026437 CA400469418 |
9 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756092997 CA8689022 |
9 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs748026437 CA8689021 |
9 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689023 rs777818572 |
10 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA400469430 rs1374132531 |
11 | M>T | No |
ClinGen TOPMed |
|
|
rs1308114018 CA400469437 |
12 | A>S | No |
ClinGen TOPMed |
|
|
rs748704480 CA8689025 |
12 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770476950 CA8689026 |
13 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
CA400469449 rs1374843347 |
14 | H>Y | No |
ClinGen TOPMed |
|
|
rs1406967777 CA400469483 |
18 | A>E | No |
ClinGen gnomAD |
|
|
rs1406967777 CA400469486 |
18 | A>V | No |
ClinGen gnomAD |
|
|
rs1410117068 CA400469515 |
21 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA8689029 rs771778245 |
22 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1379875556 CA400469604 |
26 | M>K | No |
ClinGen TOPMed |
|
|
CA8689030 rs775800585 |
27 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768992923 CA8689032 |
31 | A>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA400469707 rs1421160065 |
32 | A>V | No |
ClinGen TOPMed |
|
|
CA400469798 rs1249893998 |
38 | F>L | No |
ClinGen gnomAD |
|
|
CA8689036 rs765373613 |
39 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400469820 rs1482817952 |
39 | P>S | No |
ClinGen gnomAD |
|
|
rs1473765583 CA400469836 |
40 | A>S | No |
ClinGen gnomAD |
|
|
rs763267863 CA8689038 |
42 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs766751812 CA8689039 |
42 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1390426411 CA400469875 |
44 | P>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8689041 rs755997921 |
46 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1341715116 CA400469885 |
46 | G>R | No |
ClinGen gnomAD |
|
|
CA400469884 rs1341715116 |
46 | G>S | No |
ClinGen gnomAD |
|
|
CA8689043 rs753823876 |
47 | A>E | No |
ClinGen ExAC gnomAD |
|
|
CA8689044 rs757195340 |
51 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400469913 rs1310182116 |
51 | P>T | No |
ClinGen gnomAD |
|
|
rs1455538072 CA400469921 |
52 | L>P | No |
ClinGen TOPMed |
|
|
CA400469927 rs1258424491 |
53 | P>R | No |
ClinGen gnomAD |
|
|
rs1048308922 CA292237589 |
55 | P>L | No |
ClinGen TOPMed |
|
|
CA400469940 rs1048308922 |
55 | P>Q | No |
ClinGen TOPMed |
|
|
CA400469938 rs1433871216 |
55 | P>S | No |
ClinGen TOPMed |
|
|
rs867023713 CA292237594 |
59 | G>E | No |
ClinGen gnomAD |
|
|
CA400469976 rs1221726143 |
62 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA400469981 rs1323583331 |
62 | A>V | No |
ClinGen TOPMed |
|
|
CA400469987 rs1470451562 |
63 | A>E | No |
ClinGen TOPMed |
|
|
CA400469984 rs901242277 |
63 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA292237599 rs901242277 |
63 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1168700579 CA400469993 |
64 | A>V | No |
ClinGen TOPMed |
|
|
CA292237629 rs564411433 |
67 | A>G | No |
ClinGen 1000Genomes |
|
|
CA400470019 rs1186036074 |
69 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA400470017 rs1186036074 |
69 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs533394938 CA8689047 |
69 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1461212074 CA400470029 |
71 | A>T | No |
ClinGen gnomAD |
|
|
rs1022494087 CA292237651 |
72 | E>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1416287154 CA400470034 |
72 | E>K | No |
ClinGen gnomAD |
|
|
CA400470043 rs1264457431 |
73 | A>E | No |
ClinGen TOPMed |
|
|
CA8689048 rs771690050 |
73 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs779701751 CA8689049 |
74 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400470062 rs549885020 CA8689050 |
76 | H>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1569014277 CA400470063 |
77 | V>I | No |
ClinGen Ensembl |
|
|
rs1295913604 CA400470074 |
78 | S>L | No |
ClinGen gnomAD |
|
|
rs762368697 CA8689053 |
82 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762368697 CA400470095 |
82 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370025489 CA292237701 |
83 | H>P | No |
ClinGen ESP gnomAD |
|
|
rs1417724940 CA400470101 |
83 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA292237709 rs370025489 |
83 | H>R | No |
ClinGen ESP gnomAD |
|
| TCGA novel | 84 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689055 rs373741482 |
84 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1210493837 CA400470113 |
85 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs766662154 CA8689057 |
86 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1360887442 CA400470135 |
89 | L>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA400470134 rs1397786159 |
89 | L>V | No |
ClinGen TOPMed |
|
|
rs1199218826 CA400470140 |
90 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA400470143 rs1379017045 |
90 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA400470138 rs1199218826 |
90 | R>S | No |
ClinGen gnomAD |
|
|
rs960923591 CA292237726 |
92 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA292237725 rs960923591 |
92 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs918353769 CA292237729 |
94 | S>N | No |
ClinGen TOPMed |
|
|
rs951021132 CA292237750 |
97 | P>A | No |
ClinGen TOPMed |
|
|
rs1319126868 CA400470196 |
99 | D>H | No |
ClinGen gnomAD |
|
|
rs1319126868 CA400470195 |
99 | D>N | No |
ClinGen gnomAD |
|
| TCGA novel | 100 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400470223 rs1303802329 |
102 | E>D | No |
ClinGen gnomAD |
|
|
rs1387725570 CA400470217 |
102 | E>K | No |
ClinGen gnomAD |
|
|
rs1329600365 CA400470235 |
104 | D>Y | No |
ClinGen gnomAD |
|
|
CA400470243 rs1264566568 |
105 | P>S | No |
ClinGen TOPMed |
|
|
rs1331302385 CA400470251 |
106 | K>R | No |
ClinGen gnomAD |
|
|
rs753638712 CA8689061 |
108 | T>M | No |
ClinGen ExAC gnomAD |
|
|
rs1603240599 CA400470306 |
111 | A>D | No |
ClinGen Ensembl |
|
| TCGA novel | 112 | K>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749885279 CA8689064 |
112 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs778763621 CA8689063 |
112 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs746678515 CA8689067 |
116 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746678515 CA400470372 |
116 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1156245231 CA400470388 |
117 | Q>* | No |
ClinGen gnomAD |
|
| TCGA novel | 122 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689072 rs371215240 |
126 | V>I | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8689073 rs749342198 |
127 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA400470538 rs1404632537 |
127 | I>V | No |
ClinGen gnomAD |
|
|
rs1352483701 CA400470580 |
130 | S>T | No |
ClinGen gnomAD |
|
|
rs1226661043 CA400470592 |
131 | G>R | No |
ClinGen gnomAD |
|
|
CA400471246 rs1215572992 |
134 | M>I | No |
ClinGen TOPMed |
|
|
rs1359893522 CA400471239 |
134 | M>L | No |
ClinGen gnomAD |
|
| TCGA novel | 135 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689092 rs778364019 |
137 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400471262 rs771628572 |
137 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771628572 CA8689094 |
137 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771628572 CA8689095 |
137 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778364019 CA292238545 |
137 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689093 rs778364019 |
137 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1450119103 CA400471271 |
139 | K>Q | No |
ClinGen TOPMed |
|
|
rs772288115 CA8689097 |
139 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689098 rs772288115 |
139 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761600564 CA8689099 |
141 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs139125476 CA292238578 |
142 | V>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs147490001 CA400471298 CA400471299 |
143 | S>R | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA292238594 rs1047408346 |
144 | G>D | No |
ClinGen Ensembl |
|
|
CA400471300 rs1183731294 |
144 | G>S | No |
ClinGen TOPMed |
|
|
CA292238599 rs907757387 |
146 | D>N | No |
ClinGen Ensembl |
|
|
CA8689102 rs148128428 |
148 | K>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8689103 rs766344994 |
149 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA292238616 rs200545971 |
151 | Y>C | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs369378137 CA292238619 |
152 | I>F | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA8689104 rs751063145 |
152 | I>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292238627 rs751063145 |
152 | I>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1347873514 CA400471409 |
155 | M>I | No |
ClinGen gnomAD |
|
|
rs141951250 CA8689106 |
155 | M>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8689105 rs754473056 |
155 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1358368341 CA400471416 |
156 | D>N | No |
ClinGen TOPMed |
|
|
CA8689107 rs752299385 |
157 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs1229581007 CA400471482 |
160 | A>T | No |
ClinGen TOPMed |
|
|
rs1321130948 CA400471511 |
161 | D>E | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 161 | D>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1710576 CA400471516 rs1346822633 |
162 | D>N | skin [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA292238665 rs1034013843 |
163 | C>Y | No |
ClinGen TOPMed |
|
| TCGA novel | 164 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1217985899 CA400471649 |
169 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs778275904 CA400471678 |
171 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778275904 CA8689110 |
171 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 176 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689111 rs754291720 |
176 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1025055045 CA292238683 |
177 | K>N | No |
ClinGen TOPMed |
|
|
CA292238684 rs950886535 |
178 | A>S | No |
ClinGen TOPMed |
|
|
CA400471810 rs1603240882 |
179 | D>A | No |
ClinGen Ensembl |
|
|
CA400471827 rs1445727717 |
180 | P>R | No |
ClinGen gnomAD |
|
|
CA8689113 rs779585007 |
183 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA400471898 rs1417358712 |
184 | K>R | No |
ClinGen TOPMed |
|
|
CA8689114 rs745919438 |
185 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA8689115 rs201793266 |
185 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA292238694 rs201793266 |
185 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8689116 rs201793266 |
185 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1204050449 COSM1679985 CA400471913 |
186 | M>V | large_intestine [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1603240886 CA400471932 |
188 | I>T | No |
ClinGen Ensembl |
|
|
rs747185970 CA8689117 |
188 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA400471938 rs1603240887 |
189 | H>P | No |
ClinGen Ensembl |
|
|
rs573739161 CA400471942 |
189 | H>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs200343691 CA292238697 |
190 | P>S | No |
ClinGen Ensembl |
|
|
rs1473859474 CA400471950 |
191 | D>H | No |
ClinGen TOPMed |
|
|
CA400471961 rs1161395863 |
192 | S>I | No |
ClinGen gnomAD |
|
|
CA400471960 rs1161395863 |
192 | S>T | No |
ClinGen gnomAD |
|
|
rs374991370 CA8689120 |
194 | A>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs772959812 CA8689119 |
194 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs770811220 CA8689121 |
195 | T>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 197 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292238721 rs76487118 |
197 | E>G | No |
ClinGen Ensembl |
|
|
CA400471986 rs1406453476 |
197 | E>Q | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 197 | E>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400471996 rs1300900305 |
198 | Q>R | No |
ClinGen gnomAD |
|
|
rs1409927318 CA400472013 |
200 | M>T | No |
ClinGen gnomAD |
|
|
CA8689123 rs759023058 |
201 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA400472033 rs1349209832 |
203 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA400472041 rs1291107880 |
204 | V>A | No |
ClinGen gnomAD |
|
|
CA8689125 rs752316214 |
206 | F>Y | No |
ClinGen ExAC gnomAD |
|
|
rs760368587 CA400472068 |
208 | K>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760368587 CA8689126 |
208 | K>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA400472113 rs1231220422 |
215 | I>V | No |
ClinGen gnomAD |
|
|
CA400472129 rs1453660758 |
217 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs757727651 CA8689129 |
217 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1404152384 CA400472144 |
219 | H>L | No |
ClinGen TOPMed |
|
|
CA8689131 rs779408815 |
219 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759002822 CA8689132 |
220 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1314467762 CA400472176 |
222 | T>S | No |
ClinGen Ensembl |
|
|
rs773427151 CA8689167 |
223 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs763398451 CA8689168 |
224 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA400472213 rs1274588227 |
228 | H>Y | No |
ClinGen TOPMed |
|
|
CA400472230 rs1603241161 |
230 | Y>S | No |
ClinGen Ensembl |
|
|
rs1355609945 CA400472243 |
232 | P>T | No |
ClinGen TOPMed |
|
|
CA8689171 rs754996717 |
233 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs1336648384 CA400472274 |
236 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1468757353 CA400472272 |
236 | I>V | No |
ClinGen gnomAD |
|
|
CA8689172 rs767574262 |
237 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400472286 rs1316618064 |
238 | R>Q | No |
ClinGen gnomAD |
|
|
CA400472298 rs1410671793 |
240 | N>I | No |
ClinGen TOPMed |
|
|
rs970533000 CA292239653 |
240 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
rs867809099 CA292239667 |
241 | D>E | No |
ClinGen Ensembl |
|
|
CA400472302 rs1234208260 |
241 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1167768748 CA400472349 |
248 | S>N | No |
ClinGen TOPMed |
|
|
CA8689175 rs778075071 |
249 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400472354 rs756265719 |
249 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689174 rs756265719 |
249 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689176 rs374486125 |
251 | R>H | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1206700661 CA400472376 |
252 | T>N | No |
ClinGen gnomAD |
|
|
CA8689178 rs201360135 CA8689179 |
254 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA292239684 rs201360135 |
254 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1479173796 CA400472400 |
256 | P>L | No |
ClinGen gnomAD |
|
|
CA292239689 rs957229121 |
256 | P>S | No |
ClinGen TOPMed |
|
|
rs768782504 CA8689180 |
258 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689182 rs747744056 |
259 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA8689181 rs776252332 |
259 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1224520699 CA400472445 |
263 | V>G | No |
ClinGen TOPMed |
|
|
CA292239716 rs765488721 |
266 | Y>* | No |
ClinGen Ensembl |
|
|
rs1292036296 CA400472467 |
267 | Q>E | No |
ClinGen TOPMed |
|
|
rs1289019954 CA400472491 |
270 | K>E | No |
ClinGen gnomAD |
|
|
CA8689185 rs763165207 |
270 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs373803011 CA292240641 |
274 | L>M | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1380302085 CA400472692 |
278 | N>Y | No |
ClinGen gnomAD |
|
|
rs762064809 CA8689212 |
280 | P>Q | No |
ClinGen ExAC gnomAD |
|
|
rs754853668 CA8689215 |
288 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs781211904 CA8689216 |
289 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756068959 CA8689218 |
293 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748794461 CA8689220 |
294 | E>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 296 | R>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1603241432 CA400473010 |
298 | Q>R | No |
ClinGen Ensembl |
|
|
rs769157834 CA400473033 |
300 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689245 rs769157834 |
300 | T>M | Variant assessed as Somatic; 0.0004054 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA400473035 rs769157834 |
300 | T>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 301 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1490890241 CA400473056 |
302 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1490890241 CA400473052 |
302 | P>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA400473046 rs1292808774 |
302 | P>T | No |
ClinGen gnomAD |
|
|
CA8689248 rs146171999 |
304 | L>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs200245762 CA8689246 |
304 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201407399 CA8689249 |
305 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8689251 rs766552926 |
308 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1426131745 CA400473141 |
311 | C>R | No |
ClinGen gnomAD |
|
|
rs1569016134 CA400473154 |
312 | K>N | No |
ClinGen Ensembl |
|
|
rs760414139 CA8689253 |
314 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA8689254 rs764022876 |
315 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs1300270436 CA400473180 |
316 | D>E | No |
ClinGen TOPMed |
|
|
rs753784724 CA8689255 |
316 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA8689256 rs376284632 |
318 | A>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA400473187 rs1292917610 |
318 | A>T | Variant assessed as Somatic; 5.384e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA400473190 rs376284632 |
318 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8689258 rs749975428 |
321 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1164565625 CA400473215 |
322 | A>S | No |
ClinGen gnomAD |
|
|
rs139114561 CA292240881 |
322 | A>V | No |
ClinGen ESP |
|
|
CA400473222 rs1438473592 |
323 | S>W | No |
ClinGen gnomAD |
|
|
rs371433791 CA292240888 |
324 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs371433791 CA8689260 |
324 | S>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1603241462 CA400473238 |
326 | D>A | No |
ClinGen Ensembl |
|
|
rs779596450 CA8689261 |
326 | D>Y | No |
ClinGen ExAC |
|
|
rs1468503229 CA400473248 |
327 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA8689263 rs755304221 |
328 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747359210 CA8689262 |
328 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292240898 rs747359210 |
328 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs866923288 CA400473253 |
329 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
RCV000955217 rs182290035 CA8689264 |
329 | P>H | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs182290035 CA400473254 |
329 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs866923288 CA292240912 |
329 | P>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 330 | A>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689265 rs113676723 |
330 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770492149 CA8689266 |
331 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA400473278 rs1385424993 |
333 | P>L | No |
ClinGen gnomAD |
|
|
rs1316239426 CA400473273 |
333 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1603241472 CA400473285 |
335 | T>P | No |
ClinGen Ensembl |
|
|
rs1216439787 CA400473299 |
337 | P>S | No |
ClinGen gnomAD |
|
|
CA400473306 rs1197921404 |
338 | G>D | No |
ClinGen gnomAD |
|
|
rs1456426459 CA400473303 |
338 | G>S | No |
ClinGen gnomAD |
|
|
rs1181469768 CA400473312 |
339 | A>E | No |
ClinGen gnomAD |
|
|
rs1462495530 CA400473311 |
339 | A>S | No |
ClinGen gnomAD |
|
|
rs1462495530 CA400473309 |
339 | A>T | No |
ClinGen gnomAD |
|
|
CA8689272 rs768320221 |
343 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370843795 CA8689273 |
345 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs370843795 CA292240960 |
345 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA400473357 rs1465619424 |
347 | H>P | No |
ClinGen gnomAD |
|
|
CA400473360 rs1328769835 |
347 | H>Q | No |
ClinGen TOPMed |
|
|
rs934306736 CA292240964 |
348 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA400473364 rs1408871032 |
348 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA400473363 rs1408871032 |
348 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA292240965 rs943459389 |
349 | A>D | No |
ClinGen gnomAD |
|
|
CA400473368 rs1569016265 |
349 | A>S | No |
ClinGen Ensembl |
|
|
CA8689275 rs569358507 |
350 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA400473372 rs1327292367 |
350 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1433129297 CA400473375 |
351 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1200860470 CA400473414 |
354 | K>E | No |
ClinGen TOPMed |
|
|
CA400473424 rs1277037820 |
355 | S>* | No |
ClinGen TOPMed gnomAD |
|
|
rs1277037820 CA400473426 |
355 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
CA400473421 rs1333167168 |
355 | S>T | No |
ClinGen TOPMed |
|
|
CA292241222 rs535294444 |
356 | C>R | No |
ClinGen gnomAD |
|
| TCGA novel | 357 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292241228 rs1006930529 |
360 | S>N | No |
ClinGen TOPMed |
|
|
CA400473461 rs1269676383 |
361 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA400473462 rs1269676383 |
361 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs1192851196 CA400473482 |
363 | E>D | No |
ClinGen gnomAD |
|
|
rs1603241575 CA400473484 |
364 | P>A | No |
ClinGen Ensembl |
|
|
rs1422904411 CA400473488 |
364 | P>L | No |
ClinGen gnomAD |
|
|
rs1362107893 CA400473493 |
365 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs749180743 CA8689322 |
365 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1303144 CA400473489 rs749180743 |
365 | E>Q | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1297108502 CA400473498 |
366 | R>Q | No |
ClinGen gnomAD |
|
|
rs770945114 CA8689323 |
368 | S>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 368 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400473515 rs1273598196 |
369 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA400473516 rs1273598196 |
369 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs773715475 CA8689324 |
371 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689325 rs759112967 |
371 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA400473534 rs759112967 |
371 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs1162880145 CA400473541 |
372 | A>E | No |
ClinGen TOPMed |
|
|
CA400473539 rs1162880145 |
372 | A>V | No |
ClinGen TOPMed |
|
|
rs767208687 CA400473545 |
373 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs767208687 CA8689326 |
373 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA400473542 rs1351851521 |
373 | G>R | No |
ClinGen gnomAD |
|
|
rs775291426 CA8689327 |
374 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1490863515 CA400473557 |
375 | P>L | No |
ClinGen gnomAD |
|
| TCGA novel | 375 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754268053 CA8689330 |
378 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1177617905 CA400473580 |
379 | S>R | No |
ClinGen gnomAD |
|
|
CA400473583 rs1381926323 |
380 | P>A | No |
ClinGen gnomAD |
|
|
CA8689332 rs765795326 |
380 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400473585 rs765795326 |
380 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765795326 CA292241292 |
380 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1385413906 CA400473587 |
381 | A>P | No |
ClinGen gnomAD |
|
|
rs750429318 CA8689333 |
381 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400473601 rs1320972167 |
383 | D>G | No |
ClinGen gnomAD |
|
|
CA292241302 rs911157542 |
384 | S>N | No |
ClinGen Ensembl |
|
|
CA400473610 rs1443542556 |
384 | S>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1349852273 CA400473607 |
384 | S>R | No |
ClinGen gnomAD |
|
|
CA8689334 rs758477912 |
385 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs758477912 CA400473613 |
385 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1375148456 CA400473618 |
386 | S>G | No |
ClinGen gnomAD |
|
|
CA400473630 rs1603241604 |
387 | P>L | No |
ClinGen Ensembl |
|
|
CA400473632 rs1603241606 |
388 | T>A | No |
ClinGen Ensembl |
|
|
rs1316021986 CA400473638 |
389 | R>C | No |
ClinGen gnomAD |
|
|
rs1358687419 CA400473640 |
389 | R>H | No |
ClinGen gnomAD |
|
|
rs1358687419 CA400473642 |
389 | R>L | No |
ClinGen gnomAD |
|
|
rs1316021986 CA400473637 |
389 | R>S | No |
ClinGen gnomAD |
|
|
rs1196379865 CA400473654 |
391 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1196379865 CA400473653 |
391 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1352333884 CA400473677 |
393 | P>H | No |
ClinGen TOPMed |
|
|
CA400473680 rs1352333884 |
393 | P>L | No |
ClinGen TOPMed |
|
|
rs1451026995 CA400473666 |
393 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA400473689 rs1239861226 |
394 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 395 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1456287464 CA400473701 |
396 | A>S | No |
ClinGen gnomAD |
|
|
rs1177730387 CA400473705 |
396 | A>V | No |
ClinGen gnomAD |
|
|
rs1473559483 CA400473708 |
397 | R>G | No |
ClinGen gnomAD |
|
|
rs1161004743 CA400473713 |
397 | R>P | No |
ClinGen gnomAD |
|
|
rs914362509 CA292241342 |
400 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1173468711 CA400473749 |
400 | R>H | No |
ClinGen gnomAD |
|
|
CA292241341 rs914362509 |
400 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1398672049 CA400473760 |
401 | S>C | No |
ClinGen gnomAD |
|
|
CA400473805 rs1446547578 |
404 | R>G | No |
ClinGen gnomAD |
|
|
rs140610908 CA400473816 COSM4130465 |
404 | R>S | thyroid [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs745310839 CA8689342 |
406 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA400473849 rs1283743763 |
407 | E>K | No |
ClinGen gnomAD |
|
|
CA400473860 rs1340160900 |
407 | E>V | No |
ClinGen gnomAD |
|
|
rs1220486832 CA400473876 |
408 | P>L | No |
ClinGen gnomAD |
|
|
CA8689344 rs775203048 |
409 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1197824727 CA400473889 |
409 | A>V | No |
ClinGen gnomAD |
|
|
CA8689346 rs760370525 |
410 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs760370525 CA8689345 |
410 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs776810510 CA8689347 |
411 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689348 rs762268506 |
412 | G>C | No |
ClinGen ExAC gnomAD |
|
|
rs200287309 CA8689349 |
412 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1475466397 CA400473921 |
413 | G>W | No |
ClinGen TOPMed gnomAD |
|
|
CA292241372 rs918388666 |
414 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1195162033 CA400473941 |
414 | D>G | No |
ClinGen gnomAD |
|
|
CA400473948 rs1487669720 |
415 | G>R | No |
ClinGen TOPMed |
|
|
CA8689350 rs750954217 |
416 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1177673569 CA400473986 |
418 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1404797816 CA400474007 |
420 | R>K | No |
ClinGen gnomAD |
|
|
rs766443447 CA400474023 |
421 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766443447 CA8689352 |
421 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400474065 rs1327195802 |
425 | E>G | No |
ClinGen gnomAD |
|
|
CA292241387 rs1057235100 |
425 | E>Q | No |
ClinGen Ensembl |
|
|
CA400474075 rs1401962009 |
426 | R>S | No |
ClinGen gnomAD |
|
|
rs1338406966 CA400474088 |
427 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1057986 CA292241391 |
427 | A>P | No |
ClinGen TOPMed |
|
|
rs1057986 CA400474082 |
427 | A>T | No |
ClinGen TOPMed |
|
|
rs1338406966 CA400474090 |
427 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs755172964 CA8689354 |
428 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs568419315 CA292241400 |
429 | A>S | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1388447996 CA400474141 |
433 | D>E | No |
ClinGen gnomAD |
|
|
rs1277509249 CA400474155 |
434 | E>D | No |
ClinGen gnomAD |
|
|
rs1218225060 CA400474164 |
435 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA8689355 rs781502221 |
435 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA400474172 COSM1228681 rs1603241644 |
436 | R>C | large_intestine [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs753540297 CA8689356 |
436 | R>L | No |
ClinGen ExAC TOPMed |
|
|
rs1260389628 CA400474212 |
439 | A>T | No |
ClinGen gnomAD |
|
| TCGA novel | 440 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400474238 rs1379822721 |
441 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA8689359 rs371850274 |
442 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA400474279 rs1477316009 |
444 | E>K | No |
ClinGen TOPMed |
|
|
rs772174118 CA8689360 |
445 | Q>R | No |
ClinGen ExAC |
|
|
CA8689361 rs779687743 |
446 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1386004099 CA400474307 |
446 | G>S | No |
ClinGen gnomAD |
|
|
CA292241431 rs776350683 |
448 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs776350683 CA8689364 |
448 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA8689363 rs768152749 |
448 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs776350683 CA400474337 |
448 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1230845044 CA400474359 |
451 | V>M | No |
ClinGen gnomAD |
|
|
CA292241445 rs1025371566 |
452 | V>M | No |
ClinGen Ensembl |
|
|
CA292241447 rs952398664 |
457 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA400474441 rs1241863002 |
457 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs762026215 CA8689365 |
458 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA400474454 rs770182659 |
459 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1249443087 CA400474461 |
459 | P>L | No |
ClinGen TOPMed |
|
|
CA8689366 rs770182659 |
459 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689369 rs763421585 |
460 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs763421585 CA8689368 |
460 | L>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 460 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 460 | L>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400474816 rs1450366449 |
461 | G>A | No |
ClinGen gnomAD |
|
|
CA400474815 rs1450366449 |
461 | G>D | No |
ClinGen gnomAD |
|
|
CA400474825 rs1381303968 CA400474826 |
463 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1412936148 CA400474830 |
464 | H>N | No |
ClinGen TOPMed |
|
|
CA400474833 rs1441851413 |
464 | H>P | No |
ClinGen gnomAD |
|
|
rs1425412705 CA400474846 |
466 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs767573539 CA292248630 |
467 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs866915098 CA292248634 |
467 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs767573539 CA8689372 |
467 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1335432124 CA400474852 |
468 | L>M | No |
ClinGen TOPMed |
|
|
CA400474855 rs1322724409 |
468 | L>P | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 469 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689373 rs144548309 |
471 | S>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1377366453 CA400474872 |
471 | S>P | No |
ClinGen gnomAD |
|
|
CA400474889 rs1306662106 |
473 | H>R | No |
ClinGen gnomAD |
|
|
rs1352475758 CA400474904 |
475 | H>P | No |
ClinGen gnomAD |
|
|
rs1266677991 CA400474907 |
476 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1239256156 CA400474953 |
482 | P>S | No |
ClinGen gnomAD |
|
|
CA400474968 rs1172382800 |
485 | A>T | No |
ClinGen TOPMed |
|
|
CA292248646 rs201229574 |
486 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA8689376 rs201229574 |
486 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA400474974 rs1177112706 |
486 | G>S | No |
ClinGen gnomAD |
|
|
rs1569016903 CA400475031 |
495 | Q>K | No |
ClinGen Ensembl |
|
|
rs1400883677 CA400475052 |
497 | T>I | No |
ClinGen gnomAD |
|
|
CA8689380 rs375741598 |
498 | M>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8689381 rs780625185 |
499 | G>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 500 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1162684137 CA400475077 |
501 | G>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 502 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292248668 rs988878641 |
504 | S>C | No |
ClinGen TOPMed |
|
|
rs773546502 CA8689384 |
506 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1243368065 CA400475106 |
506 | M>T | No |
ClinGen gnomAD |
|
|
CA292248672 rs568617957 |
506 | M>V | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1284897259 CA400475128 |
509 | G>D | No |
ClinGen TOPMed |
|
|
rs1011114587 CA292248679 |
510 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8689386 rs771391654 |
513 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA400475148 rs1184100899 |
513 | A>T | No |
ClinGen TOPMed |
|
|
rs1447900446 CA400475158 |
514 | S>W | No |
ClinGen TOPMed |
|
|
rs537498833 CA8689387 |
517 | G>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs537498833 CA292248685 |
517 | G>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA292248691 rs947384542 |
518 | G>S | No |
ClinGen gnomAD |
|
|
rs1254269281 CA400475194 |
521 | G>S | No |
ClinGen gnomAD |
|
|
rs1163279475 CA400475209 |
523 | G>D | No |
ClinGen TOPMed |
|
|
CA292248703 rs1043451901 |
527 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1467101516 CA400475234 |
527 | G>V | No |
ClinGen gnomAD |
|
| TCGA novel | 530 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689390 rs752757013 |
531 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400475264 rs1466303780 |
533 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
CA400475263 rs1466303780 |
533 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA292248717 rs968525927 |
535 | G>D | No |
ClinGen TOPMed |
|
|
CA8689391 rs760926920 |
536 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292248723 rs895969804 |
538 | G>R | No |
ClinGen Ensembl |
|
|
rs930172066 CA292248726 |
539 | P>L | No |
ClinGen Ensembl |
|
|
CA292248729 rs1033976103 |
540 | A>T | No |
ClinGen TOPMed |
|
|
CA400475309 rs1436231841 |
541 | A>S | No |
ClinGen TOPMed |
|
|
rs1413672914 CA400475323 |
543 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1413672914 CA400475321 |
543 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA400475326 rs1323810054 |
543 | A>V | No |
ClinGen TOPMed |
|
|
CA292248733 rs867234761 |
547 | A>S | No |
ClinGen Ensembl |
|
|
rs1046780799 CA292248736 |
548 | A>V | No |
ClinGen Ensembl |
|
|
rs867446896 CA292248741 |
553 | H>N | No |
ClinGen Ensembl |
|
|
CA8689394 rs758271503 |
554 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400475461 rs1217331636 |
557 | H>N | No |
ClinGen gnomAD |
|
|
CA8689396 rs751530121 |
559 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA8689395 rs766360652 |
559 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA292248753 rs866263411 |
560 | A>S | No |
ClinGen Ensembl |
|
|
CA400475524 rs1157951417 |
562 | Q>K | No |
ClinGen TOPMed |
|
|
rs144017258 CA8689411 |
565 | P>A | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1288349046 CA400476367 |
566 | M>I | No |
ClinGen gnomAD |
|
|
CA8689412 rs766245891 |
566 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400476355 rs1311891914 |
566 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
CA400476381 rs1487359387 |
567 | P>L | No |
ClinGen gnomAD |
|
|
rs1569017891 CA400476375 |
567 | P>S | No |
ClinGen Ensembl |
|
|
CA400476389 rs1215930410 |
568 | T>S | No |
ClinGen gnomAD |
|
|
CA8689413 rs751465106 |
569 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767367190 CA8689415 |
570 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs149083072 CA8689416 RCV000955527 |
571 | G>A | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
| TCGA novel | 572 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400476452 rs1569017912 |
573 | F>C | No |
ClinGen Ensembl |
|
|
rs777352687 CA8689418 |
574 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1603242023 CA400476474 |
575 | Y>S | No |
ClinGen Ensembl |
|
|
CA8689419 rs372888108 |
576 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs372888108 CA292249536 |
576 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA400476507 rs1603242026 |
578 | T>P | No |
ClinGen Ensembl |
|
|
CA400476514 rs1460550911 |
578 | T>S | No |
ClinGen TOPMed |
|
|
rs142190838 CA8689421 |
579 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8689423 rs772565749 |
580 | M>K | No |
ClinGen ExAC gnomAD |
|
|
rs746235173 CA8689422 |
580 | M>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 583 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292249556 rs973646457 |
584 | A>T | No |
ClinGen gnomAD |
|
|
COSM706580 CA8689427 rs768834035 |
584 | A>V | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs762120940 CA8689429 |
585 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1467885619 CA400476587 |
587 | A>G | No |
ClinGen gnomAD |
|
|
CA8689431 rs774135961 |
587 | A>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 587 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA292249574 rs1049878712 |
588 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs760711917 CA8689435 |
592 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1304865429 CA400476618 |
593 | T>P | No |
ClinGen TOPMed |
|
|
CA8689437 rs753406923 |
594 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689438 rs756848247 |
594 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA8689441 rs750762087 |
596 | A>V | No |
ClinGen ExAC |
|
|
rs758713361 CA8689442 |
597 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA400476644 rs758713361 |
597 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA8689444 rs780517343 |
598 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1465190537 CA400476645 |
598 | A>T | No |
ClinGen gnomAD |
|
|
CA400476649 rs780517343 |
598 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8689446 rs769353072 |
599 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs781407433 CA8689447 |
599 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689449 rs556896861 |
600 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8689452 rs771737837 |
601 | A>T | No |
ClinGen ExAC |
|
|
CA292249637 rs764036287 |
603 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689456 rs764036287 |
603 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292249649 rs147014278 |
604 | G>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA400476675 rs1435787888 |
604 | G>D | No |
ClinGen gnomAD |
|
|
CA400476674 rs147014278 |
604 | G>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8689458 rs147014278 |
604 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA400476688 rs1208240880 |
606 | L>P | No |
ClinGen gnomAD |
|
|
CA400476691 rs1315085057 |
607 | S>P | No |
ClinGen TOPMed |
|
|
CA400476697 rs1473508839 |
608 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs764896880 CA8689460 |
608 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA400476700 rs1298755634 |
609 | S>R | No |
ClinGen TOPMed |
|
|
rs1057987 CA292249660 |
609 | S>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs780277539 CA8689462 |
610 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA8689464 rs755482630 |
611 | F>S | No |
ClinGen ExAC gnomAD |
|
|
CA400476737 rs1163586259 |
614 | S>R | No |
ClinGen TOPMed |
|
|
CA400476743 rs1211853570 |
615 | A>V | No |
ClinGen Ensembl |
|
|
rs191930922 RCV000916914 CA8689467 |
616 | R>Q | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA8689466 rs748195981 |
616 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8689468 rs777954444 |
618 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA292249705 rs780394333 |
619 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs373091690 CA8689470 |
620 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
rs775093972 CA8689471 |
620 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1279945164 CA400476779 |
622 | S>R | No |
ClinGen gnomAD |
|
| TCGA novel | 625 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8689472 rs760471565 |
625 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA8689473 rs768543958 |
626 | I>N | No |
ClinGen ExAC gnomAD |
|
|
rs1278938634 CA400476809 |
627 | P>A | No |
ClinGen gnomAD |
|
|
CA400476812 rs776574836 |
627 | P>L | Variant assessed as Somatic; 0.0001388 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs776574836 CA8689474 |
627 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA8689476 rs764623072 |
628 | V>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400476819 rs1477822012 |
629 | T>A | No |
ClinGen gnomAD |
|
|
rs147052385 CA8689477 |
631 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8689479 rs766068207 |
633 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1427588954 CA400476844 |
633 | S>N | No |
ClinGen gnomAD |
|
|
CA8689480 rs751904464 |
636 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs755423150 CA8689481 |
639 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA292249757 rs201661096 |
640 | G>E | No |
ClinGen Ensembl |
|
|
CA8689483 rs753230872 |
640 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756680844 CA8689484 |
642 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749403783 CA8689486 |
645 | G>C | No |
ClinGen ExAC gnomAD |
|
|
rs377687643 CA8689487 |
649 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1231627362 CA400477030 |
650 | G>S | No |
ClinGen gnomAD |
|
| TCGA novel | 651 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA400477058 rs1279090119 |
652 | N>D | No |
ClinGen gnomAD |
|
|
CA8689488 rs779229096 |
653 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA8689490 rs746759936 |
654 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689492 rs149614309 |
654 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8689489 rs746759936 |
654 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689493 rs769827285 |
655 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA292249796 rs986503687 |
656 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs772538088 CA8689494 |
656 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA400477151 CA8689495 rs762527982 |
657 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765906139 CA8689496 |
658 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA292249806 rs924184903 |
660 | P>L | No |
ClinGen TOPMed |
|
|
rs759307454 CA8689498 |
661 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400477197 rs759307454 |
661 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292249813 rs936913573 |
663 | A>T | No |
ClinGen Ensembl |
|
|
rs767959344 CA8689499 |
663 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA8689500 rs753175622 |
664 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8689502 rs34493156 |
665 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs764671010 CA8689503 |
665 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1438378054 CA400477269 |
666 | K>E | No |
ClinGen gnomAD |
|
|
rs753824335 CA8689504 |
667 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400477310 rs1603242108 |
668 | G>A | No |
ClinGen Ensembl |
|
| TCGA novel | 668 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs367963765 CA8689505 |
669 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA8689506 rs779016245 |
669 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746060657 CA8689507 |
671 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs113424512 CA8689508 |
672 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM3421754 CA8689509 rs780953070 |
672 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs948234669 CA292249861 |
673 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA400477394 rs1441759858 |
674 | A>V | No |
ClinGen gnomAD |
|
|
CA400477405 rs1179825768 |
675 | L>P | No |
ClinGen gnomAD |
|
|
CA400477421 rs1458420643 |
676 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8689513 COSM3691720 rs61751978 |
677 | P>L | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA400477433 rs61751978 |
677 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs773230802 CA8689512 |
677 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA400477446 rs1324945636 |
678 | S>T | No |
ClinGen gnomAD |
|
|
CA400477465 rs1256188257 |
680 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
CA400477464 rs1256188257 |
680 | S>W | No |
ClinGen TOPMed gnomAD |
|
|
CA400477471 rs1448528595 |
681 | A>V | No |
ClinGen gnomAD |
|
|
rs1206505563 CA400477482 |
683 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
CA400477491 rs1304331917 |
684 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
CA400477492 rs1304331917 |
684 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1334676220 CA400477499 |
685 | A>V | No |
ClinGen gnomAD |
|
|
CA8689515 rs528883638 |
686 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1244821600 CA400477504 |
686 | N>S | No |
ClinGen gnomAD |
|
|
rs1057989 CA292249885 |
689 | Q>L | No |
ClinGen Ensembl |
|
|
CA400477530 rs1259099213 |
690 | S>N | No |
ClinGen gnomAD |
|
| TCGA novel | 693 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1194305286 CA400477562 |
695 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA8689517 rs771904517 |
696 | S>N | No |
ClinGen ExAC |
|
|
rs1004517871 CA292249897 |
697 | G>R | No |
ClinGen Ensembl |
|
|
rs1379296399 CA400477606 |
701 | Q>R | No |
ClinGen TOPMed |
|
|
rs1014995360 CA292249899 |
702 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA292249906 rs899163658 |
702 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1419996654 CA400477612 |
703 | A>T | No |
ClinGen gnomAD |
|
|
rs1427020569 CA400477626 |
705 | S>A | No |
ClinGen gnomAD |
|
|
rs775935102 CA8689518 |
708 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA400477643 rs1164038671 |
708 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
rs1296116503 CA400477659 |
710 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
rs761134753 CA8689519 |
712 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA292249930 rs373456109 |
712 | K>Q | No |
ClinGen Ensembl |
|
|
rs890619577 CA292249935 |
713 | K>R | No |
ClinGen TOPMed |
1 associated diseases with Q13207
[MIM: 618223]: Vertebral anomalies and variable endocrine and T-cell dysfunction (VETD)
An autosomal dominant syndrome characterized by skeletal malformations primarily involving the vertebrae, immunodeficiency, endocrine abnormalities such as hypoparathyroidism and growth hormone deficiency, craniofacial dysmorphism, congenital cardiac anomalies consisting of double-outlet right ventricle, pulmonary valve stenosis and atrial septal defect, and developmental impairments. {ECO:0000269|PubMed:29726930}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant syndrome characterized by skeletal malformations primarily involving the vertebrae, immunodeficiency, endocrine abnormalities such as hypoparathyroidism and growth hormone deficiency, craniofacial dysmorphism, congenital cardiac anomalies consisting of double-outlet right ventricle, pulmonary valve stenosis and atrial septal defect, and developmental impairments. {ECO:0000269|PubMed:29726930}. Note=The disease is caused by variants affecting the gene represented in this entry.
4 regional properties for Q13207
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| conserved_site | Transcription factor, T-box, conserved site | 114 - 133 | IPR018186-1 |
| conserved_site | Transcription factor, T-box, conserved site | 188 - 206 | IPR018186-2 |
| domain | T-box transcription factor 2/3, transcription activation domain | 305 - 382 | IPR022582 |
| domain | T-box transcription factor, DNA-binding domain | 104 - 292 | IPR046360 |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| transcription regulator complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. |
8 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| DNA-binding transcription factor activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II. |
| DNA-binding transcription factor binding | Binding to a DNA-binding transcription factor, a protein that interacts with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. |
| DNA-binding transcription repressor activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II. |
| histone deacetylase binding | Binding to histone deacetylase. |
| RNA polymerase II cis-regulatory region sequence-specific DNA binding | Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II. |
| sequence-specific DNA binding | Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
| sequence-specific double-stranded DNA binding | Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding. |
43 GO annotations of biological process
| Name | Definition |
|---|---|
| aorta morphogenesis | The process in which the anatomical structures of an aorta are generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body. |
| apoptotic process | A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. |
| atrioventricular canal development | The progression of the atrioventricular canal over time, from its formation to the mature structure. The atrioventricular canal is the part of the heart connecting the atrium to the cardiac ventricle. |
| atrioventricular canal morphogenesis | The developmental process by which an atrioventricular canal is generated and organized. |
| cardiac jelly development | The process whose specific outcome is the progression of cardiac jelly over time, from its formation to the mature structure. The cardiac jelly is an acellular gelatinous matrix secreted by the myocardium and plays a central role in the septation of the heart. |
| cardiac muscle cell myoblast differentiation | The process in which a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life. |
| cardiac muscle tissue development | The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure. |
| cell fate specification | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. |
| cellular senescence | A cell aging process stimulated in response to cellular stress, whereby normal cells lose the ability to divide through irreversible cell cycle arrest. |
| cochlea morphogenesis | The process in which the cochlea is generated and organized. |
| developmental growth involved in morphogenesis | The increase in size or mass of an anatomical structure that contributes to the structure attaining its shape. |
| embryonic camera-type eye morphogenesis | The process in which the anatomical structures of the eye are generated and organized during embryonic development. |
| embryonic digit morphogenesis | The process, occurring in the embryo, by which the anatomical structures of the digit are generated and organized. A digit is one of the terminal divisions of an appendage, such as a finger or toe. |
| embryonic heart tube development | The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field. |
| endocardial cushion formation | The developmental process pertaining to the initial formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. |
| endocardial cushion morphogenesis | The process in which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves. |
| epithelial tube branching involved in lung morphogenesis | The process in which a highly ordered sequence of patterning events generates the branched epithelial tubes of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units. |
| fibroblast growth factor receptor signaling pathway | The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands. |
| heart looping | The tube morphogenesis process in which the primitive heart tube loops asymmetrically. This looping brings the primitive heart chambers into alignment preceding their future integration. Heart looping begins with dextral-looping and ends when the main regional divisions of the mature heart and primordium of the great arterial trunks become established preceeding septation. |
| mammary placode formation | The developmental process in which the mammary placode forms. The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper. |
| melanocyte proliferation | The multiplication or reproduction of melanocytes, resulting in the expansion of a cell population. A melanocyte is a pigment cell derived from the neural crest. It contains melanin-filled pigment granules, which give a brown to black appearance. |
| mesenchymal cell proliferation involved in lung development | The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population that contributes to the progression of the lung over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets. |
| muscle cell fate determination | The cell fate determination process in which a cell becomes capable of differentiating autonomously into a muscle cell regardless of its environment; upon determination, the cell fate cannot be reversed. |
| negative regulation of cardiac chamber formation | Any process that stops, prevents or reduces the frequency, rate or extent of cardiac chamber formation. |
| negative regulation of cellular senescence | Any process that stops, prevents or reduces the frequency, rate or extent of cellular senescence. |
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| negative regulation of heart looping | Any process that stops, prevents or reduces the frequency, rate or extent of heart looping. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| neurogenesis | Generation of cells within the nervous system. |
| Notch signaling pathway | The series of molecular signals initiated by an extracellular ligand binding to the receptor Notch on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. |
| outflow tract morphogenesis | The process in which the anatomical structures of the outflow tract are generated and organized. The outflow tract is the portion of the heart through which blood flows into the arteries. |
| outflow tract septum morphogenesis | The process in which the anatomical structures of the outflow tract septum are generated and organized. The outflow tract septum is a partition in the outflow tract. |
| pharynx development | The biological process whose specific outcome is the progression of a pharynx from an initial condition to its mature state. The pharynx is the part of the digestive system immediately posterior to the mouth. |
| pigment metabolic process involved in pigmentation | The chemical reactions and pathways involving a pigment, any general or particular coloring matter in living organisms, resulting in the deposition or aggregation of pigment in an organism, tissue or cell. |
| positive regulation of cardiac muscle cell proliferation | Any process that activates or increases the frequency, rate or extent of cardiac muscle cell proliferation. |
| positive regulation of cell cycle G1/S phase transition | Any signalling pathway that activates or increases the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the cell cycle. |
| positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| regulation of heart contraction | Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| response to retinoic acid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus. |
| roof of mouth development | The biological process whose specific outcome is the progression of the roof of the mouth from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The roof of the mouth is the partition that separates the nasal and oral cavities. |
| smooth muscle cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell; smooth muscle lacks transverse striations in its constituent fibers and are almost always involuntary. |
| ureteric peristalsis | A wavelike sequence of involuntary muscular contraction and relaxation that passes along the ureter, impelling the contents onwards. The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder. |
7 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P79779 | TBX6L | T-box-containing protein TBX6L | Gallus gallus (Chicken) | PR |
| Q16650 | TBR1 | T-box brain protein 1 | Homo sapiens (Human) | PR |
| Q64336 | Tbr1 | T-box brain protein 1 | Mus musculus (Mouse) | PR |
| Q60707 | Tbx2 | T-box transcription factor TBX2 | Mus musculus (Mouse) | PR |
| Q20257 | tbx-11 | Putative T-box protein 11 | Caenorhabditis elegans | PR |
| Q22289 | tbx-9 | T-box transcription factor tbx-9 | Caenorhabditis elegans | PR |
| Q9N2K7 | tbx-30 | Putative T-box protein 30/42 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MREPALAASA | MAYHPFHAPR | PADFPMSAFL | AAAQPSFFPA | LALPPGALAK | PLPDPGLAGA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AAAAAAAAAA | AEAGLHVSAL | GPHPPAAHLR | SLKSLEPEDE | VEDDPKVTLE | AKELWDQFHK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| LGTEMVITKS | GRRMFPPFKV | RVSGLDKKAK | YILLMDIVAA | DDCRYKFHNS | RWMVAGKADP |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EMPKRMYIHP | DSPATGEQWM | AKPVAFHKLK | LTNNISDKHG | FTILNSMHKY | QPRFHIVRAN |
| 250 | 260 | 270 | 280 | 290 | 300 |
| DILKLPYSTF | RTYVFPETDF | IAVTAYQNDK | ITQLKIDNNP | FAKGFRDTGN | GRREKRKQLT |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LPSLRLYEEH | CKPERDGAES | DASSCDPPPA | REPPTSPGAA | PSPLRLHRAR | AEEKSCAADS |
| 370 | 380 | 390 | 400 | 410 | 420 |
| DPEPERLSEE | RAGAPLGRSP | APDSASPTRL | TEPERARERR | SPERGKEPAE | SGGDGPFGLR |
| 430 | 440 | 450 | 460 | 470 | 480 |
| SLEKERAEAR | RKDEGRKEAA | EGKEQGLAPL | VVQTDSASPL | GAGHLPGLAF | SSHLHGQQFF |
| 490 | 500 | 510 | 520 | 530 | 540 |
| GPLGAGQPLF | LHPGQFTMGP | GAFSAMGMGH | LLASVAGGGN | GGGGGPGTAA | GLDAGGLGPA |
| 550 | 560 | 570 | 580 | 590 | 600 |
| ASAASTAAPF | PFHLSQHMLA | SQGIPMPTFG | GLFPYPYTYM | AAAAAAASAL | PATSAAAAAA |
| 610 | 620 | 630 | 640 | 650 | 660 |
| AAAGSLSRSP | FLGSARPRLR | FSPYQIPVTI | PPSTSLLTTG | LASEGSKAAG | GNSREPSPLP |
| 670 | 680 | 690 | 700 | 710 | |
| ELALRKVGAP | SRGALSPSGS | AKEAANELQS | IQRLVSGLES | QRALSPGRES | PK |