Q02880
Gene name |
TOP2B |
Protein name |
DNA topoisomerase 2-beta |
Names |
DNA topoisomerase II, beta isozyme |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:7155 |
EC number |
5.6.2.2: Enzymes altering nucleic acid conformation |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
16 structures for Q02880
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 3QX3 | X-ray | 216 A | A/B | 450-1206 | PDB |
| 4G0U | X-ray | 270 A | A/B | 450-1206 | PDB |
| 4G0V | X-ray | 255 A | A/B | 450-1206 | PDB |
| 4G0W | X-ray | 270 A | A/B | 450-1206 | PDB |
| 4J3N | X-ray | 230 A | A/B | 450-1206 | PDB |
| 5GWI | X-ray | 274 A | A/B | 450-1206 | PDB |
| 5GWJ | X-ray | 257 A | A/B | 450-1206 | PDB |
| 5ZAD | X-ray | 254 A | A/B | 450-1206 | PDB |
| 5ZEN | X-ray | 275 A | A | 450-1206 | PDB |
| 5ZQF | X-ray | 387 A | A | 450-1206 | PDB |
| 5ZRF | X-ray | 230 A | A/B | 450-1206 | PDB |
| 7QFN | X-ray | 262 A | A | 50-449 | PDB |
| 7QFO | X-ray | 190 A | A | 50-449 | PDB |
| 7YQ8 | EM | 390 A | A/B | 1-1626 | PDB |
| 7ZBG | X-ray | 230 A | A | 50-449 | PDB |
| AF-Q02880-F1 | Predicted | AlphaFoldDB |
919 variants for Q02880
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA2288979 RCV001326224 rs772611515 RCV002546166 CA351915044 |
34 | K>N | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ExAC TOPMed gnomAD ClinVar dbSNP |
|
CA10588830 RCV000256202 VAR_079273 rs886039770 |
63 | H>Y | Autism spectrum disorder probable disease-associated variant found in patients with global developmental delay and autism spectrum disorder [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
TCGA novel VAR_086569 |
488 | S>L | Variant assessed as Somatic; impact. BILU; loss-of-function variant in a yeast complementation assay [NCI-TCGA, UniProt] | Yes |
NCI-TCGA UniProt |
| VAR_086570 | 490 | A>P | BILU; decreased protein abundance; severely decreased DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [UniProt] | Yes | UniProt |
| VAR_086571 | 593 | E>del | BILU; loss-of-function variant in a yeast complementation assay [UniProt] | Yes | UniProt |
|
RCV001266592 RCV003222291 rs1702879491 |
634 | Y>C | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_086572 | 638 | G>S | BILU; loss-of-function variant in a yeast complementation assay [UniProt] | Yes | UniProt |
|
RCV002282511 rs1702479861 RCV001295817 |
1151 | L>V | B-cell immunodeficiency, distal limb anomalies, and urogenital malformations [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV002538463 CA2287949 RCV001295977 rs187350468 |
1620 | V>I | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1374710745 CA351887572 |
2 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA351887578 rs1219277355 |
2 | A>T | No |
ClinGen gnomAD |
|
|
rs1374710745 CA351887569 |
2 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1439695278 CA351887556 |
3 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA351887540 rs1273825089 |
4 | S>L | No |
ClinGen TOPMed gnomAD |
|
|
CA351887533 rs1445687893 |
5 | G>A | No |
ClinGen TOPMed |
|
|
CA2289002 rs771779926 |
5 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA351887522 rs1235525179 |
7 | C>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA2289001 rs759290825 |
8 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs759290825 CA351887507 |
8 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA351887481 rs1349954555 |
10 | G>E | No |
ClinGen TOPMed |
|
|
rs1355553493 CA351887466 |
11 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
rs145455403 CA2288999 |
11 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA351887464 rs1355553493 |
11 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA351887453 rs1428485179 |
12 | G>D | No |
ClinGen gnomAD |
|
|
CA351887462 rs1328982836 |
12 | G>S | No |
ClinGen gnomAD |
|
|
rs1340109717 CA351887451 |
13 | V>M | No |
ClinGen TOPMed |
|
|
CA351887439 rs1368370246 |
14 | G>S | No |
ClinGen gnomAD |
|
|
CA351887420 rs1435179959 |
15 | G>D | No |
ClinGen gnomAD |
|
|
CA351887406 rs1189187915 |
16 | G>V | No |
ClinGen gnomAD |
|
|
rs1421480465 CA351887402 |
17 | N>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1233350573 CA351887387 |
18 | G>R | No |
ClinGen gnomAD |
|
|
rs777837072 CA71640604 |
19 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288997 rs777837072 |
19 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1482094817 CA351887371 |
19 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs945093763 CA71640595 |
21 | T>A | No |
ClinGen TOPMed |
|
|
CA351887355 rs1282814678 |
21 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1282814678 CA351887357 |
21 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
CA71640593 rs913543039 |
23 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
CA351887344 rs913543039 |
23 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA2288982 rs774190550 |
27 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA351915196 rs1559506961 |
27 | D>N | No |
ClinGen Ensembl |
|
|
CA2288983 rs370167709 |
27 | D>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs770563756 CA2288981 |
28 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs1423294607 CA351915178 |
28 | Q>R | No |
ClinGen gnomAD |
|
|
CA2288980 rs762587075 |
30 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1327115055 CA351915136 |
31 | A>V | No |
ClinGen Ensembl |
|
|
CA2288978 rs769705803 |
35 | E>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 35 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs1185227770 | 35 | E>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1207146744 CA351915014 |
39 | T>A | No |
ClinGen gnomAD |
|
|
rs1470246857 CA351915007 |
40 | A>P | No |
ClinGen gnomAD |
|
|
rs1470246857 CA351915006 |
40 | A>S | No |
ClinGen gnomAD |
|
|
rs748068791 CA2288976 |
41 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA351914999 rs780918375 |
41 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288975 rs780918375 |
41 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288973 rs746084958 |
43 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288970 rs753885014 |
44 | D>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757433433 CA2288972 |
44 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757433433 CA2288971 |
44 | D>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1432570087 CA351914970 |
46 | S>A | No |
ClinGen gnomAD |
|
|
rs1383841349 CA351914965 |
46 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1454739421 CA351914943 |
49 | L>F | No |
ClinGen TOPMed |
|
|
rs777742617 CA2288969 |
49 | L>W | No |
ClinGen ExAC gnomAD |
|
|
rs756592268 CA351914940 |
50 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs756592268 CA2288968 |
50 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs908101912 CA71666865 |
50 | S>P | No |
ClinGen Ensembl |
|
|
CA351914917 rs1378865143 |
54 | V>M | No |
ClinGen TOPMed |
|
|
rs1297511160 CA351914899 |
56 | Q>R | No |
ClinGen gnomAD |
|
|
CA351914855 rs1172551855 |
62 | E>G | No |
ClinGen gnomAD |
|
|
CA2288966 rs767965549 |
64 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200396829 CA2288965 |
65 | L>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA351914812 rs1187094677 |
66 | L>F | No |
ClinGen gnomAD |
|
|
CA71666812 rs370924487 |
73 | G>A | No |
ClinGen ESP |
|
|
CA2288962 rs762521027 |
74 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1415402074 CA351914710 |
75 | V>M | No |
ClinGen gnomAD |
|
| TCGA novel | 77 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351914664 rs1163325494 |
78 | L>S | No |
ClinGen gnomAD |
|
|
CA2288958 rs557902062 |
79 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1322779749 CA351914512 |
81 | F>V | No |
ClinGen TOPMed |
|
|
CA351914479 rs1329297501 |
82 | M>I | No |
ClinGen gnomAD |
|
|
rs1309034515 CA351914464 |
83 | W>* | No |
ClinGen gnomAD |
|
|
rs1559506200 CA351914453 |
84 | V>A | No |
ClinGen Ensembl |
|
|
CA2288940 rs750095679 |
84 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs764796902 COSM3660467 CA2288939 |
85 | Y>C | liver [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA351914356 rs1466888766 |
91 | M>I | No |
ClinGen TOPMed |
|
|
CA351914347 rs1403128546 |
92 | N>T | No |
ClinGen gnomAD |
|
|
CA2288937 rs763948503 |
93 | C>F | No |
ClinGen ExAC gnomAD |
|
|
CA2288936 COSM1043381 rs763948503 |
93 | C>Y | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA2288935 rs760637179 |
95 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351914295 rs1184486100 |
98 | F>L | No |
ClinGen TOPMed |
|
|
rs1472666365 CA351914263 |
100 | P>L | No |
ClinGen gnomAD |
|
|
rs1167069512 CA351914261 |
101 | G>S | No |
ClinGen TOPMed |
|
|
rs1415732249 CA351914207 |
105 | I>L | No |
ClinGen TOPMed |
|
|
rs1215677739 CA351913939 |
118 | Q>H | No |
ClinGen gnomAD |
|
|
rs1410369484 CA351913932 |
119 | R>T | No |
ClinGen TOPMed |
|
|
CA351913912 rs1357137757 |
120 | D>E | No |
ClinGen gnomAD |
|
|
CA2288918 rs372592161 RCV001344964 |
121 | K>M | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs752614363 CA2288917 |
124 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs1434764984 CA351913843 |
126 | I>M | No |
ClinGen gnomAD |
|
|
rs767342178 CA2288916 |
126 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs976190364 CA71664131 |
127 | K>E | No |
ClinGen TOPMed |
|
|
rs1413567205 CA351913820 |
130 | I>T | No |
ClinGen TOPMed |
|
|
CA71664102 rs553516268 |
130 | I>V | No |
ClinGen 1000Genomes TOPMed |
|
|
rs1328482377 CA351913810 |
131 | D>E | No |
ClinGen gnomAD |
|
|
rs774209671 CA2288914 |
132 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1575579734 CA351913473 |
133 | E>* | No |
ClinGen Ensembl |
|
|
rs1368227324 CA351913472 |
133 | E>A | No |
ClinGen gnomAD |
|
|
RCV001324785 rs1703158547 |
135 | N>* | No |
ClinVar dbSNP |
|
|
rs1332793833 CA351913455 |
135 | N>K | No |
ClinGen gnomAD |
|
|
CA351913445 rs1246008535 |
137 | I>V | No |
ClinGen gnomAD |
|
|
rs1196912366 CA351913438 |
138 | S>G | No |
ClinGen gnomAD |
|
| TCGA novel | 142 | N>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs777233432 CA2288893 |
143 | G>R | No |
ClinGen ExAC |
|
|
CA351913379 rs1252899660 |
146 | I>V | No |
ClinGen gnomAD |
|
|
CA71660578 rs4681031 |
150 | E>K | No |
ClinGen Ensembl |
|
|
CA2288890 rs767301754 |
150 | E>V | No |
ClinGen ExAC |
|
|
rs185542969 CA71660555 |
155 | K>R | No |
ClinGen 1000Genomes |
|
|
CA351913302 rs1220141426 |
157 | Y>C | No |
ClinGen gnomAD |
|
|
rs1184292539 CA351913294 |
158 | V>A | No |
ClinGen TOPMed |
|
|
CA351913298 rs1344977549 |
158 | V>I | No |
ClinGen gnomAD |
|
|
CA2288886 rs762108479 |
162 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs777036476 CA2288885 |
166 | L>V | No |
ClinGen ExAC |
|
|
rs1351796911 CA351913226 |
169 | S>P | No |
ClinGen gnomAD |
|
|
CA2288883 rs760612076 |
173 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760612076 CA71660516 |
173 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351913189 rs1178003980 |
174 | D>N | No |
ClinGen gnomAD |
|
|
rs775641676 CA2288882 |
175 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351913170 rs1408602630 |
176 | E>D | No |
ClinGen gnomAD |
|
|
CA351913173 rs1473650062 |
176 | E>G | No |
ClinGen gnomAD |
|
|
CA2288881 rs540231638 |
176 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA351913146 rs1432164040 |
180 | T>A | No |
ClinGen TOPMed |
|
|
rs867000913 CA71660489 |
181 | G>C | No |
ClinGen Ensembl |
|
|
CA351913108 rs1559503671 |
183 | R>H | No |
ClinGen Ensembl |
|
|
rs1244047807 CA351913090 |
184 | N>S | No |
ClinGen TOPMed |
|
| TCGA novel | 190 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288871 rs780785206 |
192 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1207609376 CA351912943 |
193 | I>T | No |
ClinGen gnomAD |
|
|
rs1180278357 CA351912917 |
195 | S>G | No |
ClinGen TOPMed |
|
| TCGA novel | 195 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1228536434 CA351912877 |
197 | K>R | No |
ClinGen gnomAD |
|
|
CA351912843 rs1377914245 |
199 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1022631364 CA71659744 |
200 | V>A | No |
ClinGen Ensembl |
|
|
CA71659743 rs868359051 |
201 | E>* | No |
ClinGen Ensembl |
|
|
rs766248264 CA2288868 |
202 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA71659725 rs919085098 |
203 | A>G | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 203 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs867930067 CA71659720 |
204 | C>F | No |
ClinGen Ensembl |
|
|
rs1389354130 CA351912568 |
205 | K>Q | No |
ClinGen gnomAD |
|
|
CA351912515 rs1351692530 |
208 | K>E | No |
ClinGen gnomAD |
|
|
rs147912364 CA2288867 |
209 | H>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2288865 rs202236498 |
210 | S>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2288866 rs202236498 |
210 | S>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs747858990 CA2288854 |
216 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs746592444 CA71658865 |
216 | M>K | No |
ClinGen TOPMed |
|
|
rs568021848 CA71658876 |
216 | M>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2288855 rs568021848 |
216 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 217 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288853 rs750737822 |
220 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288852 rs754560171 |
222 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA351912292 rs1444350238 |
222 | T>S | No |
ClinGen TOPMed |
|
|
CA351912283 rs1170702260 |
224 | E>K | No |
ClinGen gnomAD |
|
|
rs1208221642 CA351912274 |
225 | A>P | No |
ClinGen TOPMed |
|
|
rs1430870897 CA351912265 |
226 | K>R | No |
ClinGen gnomAD |
|
|
rs1389949549 CA351912246 |
229 | H>N | No |
ClinGen gnomAD |
|
|
CA71658813 rs368569356 |
231 | D>G | No |
ClinGen ESP gnomAD |
|
|
CA2288851 rs746918200 |
233 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288850 rs780200993 |
234 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs758411041 CA2288849 |
235 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1185034976 CA351912189 |
237 | C>R | No |
ClinGen TOPMed |
|
|
rs1434685416 CA351912183 |
237 | C>W | No |
ClinGen gnomAD |
|
|
CA2288847 rs765141504 |
238 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1575578580 CA351912171 |
239 | T>I | No |
ClinGen Ensembl |
|
|
CA351912139 rs1224916396 |
244 | L>V | No |
ClinGen gnomAD |
|
| TCGA novel | 245 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351912108 rs1410378172 |
248 | K>M | No |
ClinGen TOPMed |
|
|
CA351912103 rs1301865383 |
249 | M>V | No |
ClinGen gnomAD |
|
|
rs968420858 CA71658760 |
250 | E>G | No |
ClinGen Ensembl |
|
|
CA71658757 rs1015927365 |
254 | K>M | No |
ClinGen TOPMed gnomAD |
|
|
rs759718578 CA2288843 |
256 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs759718578 CA351912051 |
256 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs766807580 CA2288841 |
260 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs376005813 CA351912016 |
261 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288840 rs376005813 |
261 | T>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1479706479 CA351911957 |
270 | S>L | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 270 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1440401891 CA351911954 |
271 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
CA351911944 rs1575578533 |
272 | R>K | No |
ClinGen Ensembl |
|
|
rs747728982 CA2288837 |
273 | G>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 273 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351911932 rs1483196850 |
274 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1250576222 CA351911929 |
274 | V>G | No |
ClinGen gnomAD |
|
|
rs1483196850 CA351911934 |
274 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA351911915 rs1575578515 |
276 | V>G | No |
ClinGen Ensembl |
|
|
rs1006383846 CA71658691 |
279 | N>S | No |
ClinGen TOPMed |
|
|
rs867773200 CA71658668 |
280 | G>* | No |
ClinGen gnomAD |
|
|
CA351911890 rs867773200 |
280 | G>R | No |
ClinGen gnomAD |
|
|
rs1175761381 CA351911878 |
281 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA2288817 rs201071120 |
285 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201071120 CA2288818 |
285 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765519487 CA2288816 |
288 | F>V | No |
ClinGen ExAC gnomAD |
|
|
CA2288814 rs776876327 |
289 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA2288813 rs768311598 |
289 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs776876327 CA2288815 |
289 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA2288809 rs745795484 |
295 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
CA351911757 rs1379402113 |
298 | D>H | No |
ClinGen gnomAD |
|
|
rs749046868 CA2288806 |
301 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs932624509 CA71656964 |
302 | E>A | No |
ClinGen Ensembl |
|
|
CA2288805 rs61756346 |
303 | T>I | No |
ClinGen ESP ExAC gnomAD |
|
|
rs61756346 CA71656960 |
303 | T>N | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1391533191 CA351911715 |
304 | G>E | No |
ClinGen gnomAD |
|
|
rs1391533191 CA351911713 |
304 | G>V | No |
ClinGen gnomAD |
|
|
CA351911711 rs1321792917 |
305 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1156241206 CA351911645 |
315 | N>D | No |
ClinGen TOPMed gnomAD |
|
|
rs780079585 CA2288802 |
318 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA351911610 rs758545072 |
319 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA71656939 rs376377866 |
319 | D>N | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA351911593 rs1442518869 |
322 | L>V | No |
ClinGen gnomAD |
|
|
rs1024439985 CA71656935 |
323 | T>I | No |
ClinGen TOPMed |
|
|
rs762255155 CA2288798 |
331 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs762255155 CA351911530 |
331 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs1357373192 CA351911495 |
335 | V>G | No |
ClinGen gnomAD |
|
|
CA351911488 rs376501583 |
336 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288795 rs563383223 |
337 | S>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1000291125 CA71656911 |
340 | T>A | No |
ClinGen TOPMed |
|
|
rs769567284 CA2288767 |
344 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA351910877 rs1174241309 |
345 | R>Q | No |
ClinGen gnomAD |
|
|
rs772229888 CA2288764 |
345 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM730398 CA2288762 rs372468052 |
347 | V>L | lung [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA2288761 rs372468052 |
347 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA351910858 rs1357930313 |
348 | D>G | No |
ClinGen TOPMed |
|
|
CA351910852 rs1223099460 |
349 | Y>H | No |
ClinGen gnomAD |
|
|
rs1291004474 CA351910838 |
351 | V>A | No |
ClinGen TOPMed |
|
|
rs369506905 CA351910839 |
351 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288760 rs369506905 |
351 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs947590543 CA71655853 |
352 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA2288757 rs753069547 |
359 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA2288759 rs778366146 |
359 | I>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 361 | V>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749741390 CA71655844 |
361 | V>I | No |
ClinGen Ensembl |
|
|
CA351910746 rs1281091591 |
365 | K>R | No |
ClinGen gnomAD |
|
| TCGA novel | 365 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351910734 rs1231014625 |
366 | N>K | No |
ClinGen gnomAD |
|
|
rs1020693245 CA71655843 |
368 | A>G | No |
ClinGen Ensembl |
|
|
CA351910707 rs1323396185 |
371 | S>P | No |
ClinGen gnomAD |
|
|
rs192936167 CA71655652 |
381 | I>V | No |
ClinGen 1000Genomes |
|
|
CA71655651 rs868678549 |
387 | C>F | No |
ClinGen Ensembl |
|
|
CA2288731 rs764772489 |
389 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1416194713 CA351910557 |
390 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 391 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs867758232 CA71655645 |
392 | P>S | No |
ClinGen Ensembl |
|
|
rs1239258454 CA351910538 |
393 | T>A | No |
ClinGen TOPMed |
|
|
CA2288730 rs761704180 |
393 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs763932948 CA2288728 |
402 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA2288727 rs760328220 |
403 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs374630212 CA2288726 |
404 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1466916403 CA351910450 |
405 | Q>H | No |
ClinGen TOPMed |
|
|
CA351910447 rs1172766643 |
406 | P>S | No |
ClinGen TOPMed |
|
|
rs1314805712 CA351910409 |
411 | S>C | No |
ClinGen gnomAD |
|
|
CA2288723 rs773404223 |
413 | C>G | No |
ClinGen ExAC gnomAD |
|
|
CA351910386 rs1246511019 CA351910385 |
414 | Q>H | No |
ClinGen gnomAD |
|
|
rs866591796 CA71655618 |
415 | L>M | No |
ClinGen Ensembl |
|
|
CA351910366 rs1358455310 COSM1043376 |
418 | K>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
| TCGA novel | 420 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 422 | A>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs761928881 CA2288702 |
423 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs776858356 CA2288701 |
425 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769008832 CA2288700 |
426 | C>F | No |
ClinGen ExAC gnomAD |
|
|
rs1435355077 CA351910087 |
427 | G>D | No |
ClinGen gnomAD |
|
|
rs775683110 CA2288698 |
428 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200329755 CA2288697 |
429 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 430 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351910069 rs1266305512 |
430 | E>G | No |
ClinGen gnomAD |
|
|
rs1207109854 CA351910062 |
431 | S>N | No |
ClinGen gnomAD |
|
| TCGA novel | 440 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288696 rs745503698 |
443 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs988067844 CA71654418 |
445 | N>Y | No |
ClinGen Ensembl |
|
|
CA351909900 rs1222947464 |
454 | S>G | No |
ClinGen gnomAD |
|
|
CA2288693 rs748754892 |
454 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 455 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs777365271 CA2288692 |
456 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 459 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs202152951 CA2288691 |
459 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776118307 CA2288679 |
472 | H>R | No |
ClinGen ExAC |
|
| TCGA novel | 473 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1398137194 CA351909565 |
474 | L>P | No |
ClinGen gnomAD |
|
|
CA2288677 RCV001350007 rs746161334 |
475 | E>D | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1468639579 CA351909528 |
479 | I>T | No |
ClinGen gnomAD |
|
|
rs1245537288 CA351909499 |
484 | D>N | No |
ClinGen TOPMed |
|
|
rs1362826451 CA351909454 |
491 | V>M | No |
ClinGen gnomAD |
|
|
rs866815621 CA71654088 |
493 | G>R | No |
ClinGen Ensembl |
|
|
CA351909431 rs1575575398 |
494 | L>F | No |
ClinGen Ensembl |
|
|
CA351909426 rs1575575394 |
495 | G>A | No |
ClinGen Ensembl |
|
|
rs1187294492 CA351909416 |
497 | I>F | No |
ClinGen TOPMed |
|
|
CA351909414 rs1364807137 |
497 | I>T | No |
ClinGen TOPMed |
|
|
rs866352076 CA71654074 |
499 | R>Q | No |
ClinGen gnomAD |
|
|
rs1575575375 CA351909367 |
504 | V>G | No |
ClinGen Ensembl |
|
|
CA351909283 rs1408227039 |
510 | K>R | No |
ClinGen TOPMed |
|
|
rs1259176041 CA351909098 |
519 | H>Y | No |
ClinGen gnomAD |
|
|
CA351909072 rs1575575348 |
520 | K>R | No |
ClinGen Ensembl |
|
|
CA351908946 rs1559500847 |
522 | I>N | No |
ClinGen Ensembl |
|
|
RCV001325923 rs1702914857 |
526 | A>P | No |
ClinVar dbSNP |
|
| TCGA novel | 529 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288662 rs754151946 |
530 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA351908697 rs1490561186 |
535 | V>I | No |
ClinGen gnomAD |
|
| TCGA novel | 537 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351908582 rs1244201294 |
540 | K>N | No |
ClinGen gnomAD |
|
|
CA2288660 RCV001314884 rs760747357 |
547 | E>D | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1271271402 CA351908443 |
547 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA2288659 rs775433798 |
550 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA71653798 COSM1422208 rs748179631 |
553 | R>H | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
rs771324506 CA2288654 |
562 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA351908312 rs1168433979 |
563 | Q>P | No |
ClinGen gnomAD |
|
|
rs1302829713 CA351908201 |
570 | I>V | No |
ClinGen gnomAD |
|
|
rs1436617787 CA351908056 |
580 | H>Y | No |
ClinGen gnomAD |
|
|
CA351907941 rs1575574700 |
588 | H>Y | No |
ClinGen Ensembl |
|
|
rs941984985 CA71653074 |
589 | G>D | No |
ClinGen gnomAD |
|
|
CA351907930 rs1261905838 |
589 | G>S | No |
ClinGen gnomAD |
|
|
CA71653071 rs909036265 |
599 | V>I | No |
ClinGen Ensembl |
|
| TCGA novel | 600 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs745633495 CA2288622 |
603 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351907094 rs745633495 |
603 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288620 rs756336705 |
604 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 604 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs752902234 CA2288619 |
604 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA2288621 rs756336705 |
604 | N>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288617 rs755109284 |
606 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA2288618 rs529577438 |
606 | Q>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 610 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1633107 CA2288615 rs766805795 |
615 | E>A | liver [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1198127705 CA351906988 |
618 | E>G | No |
ClinGen TOPMed |
|
|
CA2288613 rs750753876 |
618 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA351906955 rs376162589 |
622 | H>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288611 rs376162589 |
622 | H>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1390516419 CA351906956 |
622 | H>Y | No |
ClinGen TOPMed |
|
|
rs776496462 CA2288610 |
623 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763847568 CA2288609 |
625 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1346084884 CA351906933 |
625 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1575574610 CA351906924 |
626 | Q>H | No |
ClinGen Ensembl |
|
| TCGA novel | 633 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 640 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1028363501 CA71651661 |
647 | E>Q | No |
ClinGen TOPMed |
|
| TCGA novel | 650 | A>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288595 rs765633968 |
654 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs1173166728 CA351906496 |
656 | R>C | No |
ClinGen gnomAD |
|
|
rs757502615 CA2288594 COSM183990 |
656 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1185386412 CA351906461 |
657 | I>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1351628681 CA351906347 |
660 | R>T | No |
ClinGen TOPMed |
|
|
rs760423678 CA2288591 |
662 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1490127061 CA351906184 |
667 | D>A | No |
ClinGen gnomAD |
|
|
CA2288589 rs766974741 |
668 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA351906165 rs1575573659 |
668 | A>P | No |
ClinGen Ensembl |
|
|
rs766974741 CA351906162 |
668 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA71651612 rs532925587 |
669 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
| TCGA novel | 669 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA71651245 rs944499512 |
673 | A>S | No |
ClinGen Ensembl |
|
|
CA2288566 rs375889905 |
676 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1575573464 CA351905899 |
677 | K>R | No |
ClinGen Ensembl |
|
|
rs1575573454 CA351905781 |
685 | W>R | No |
ClinGen Ensembl |
|
| TCGA novel | 696 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351905647 rs1237274129 |
696 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1292783449 CA351905563 |
703 | E>G | No |
ClinGen TOPMed |
|
| rs1314965615 | 704 | Q>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351905476 rs1243172481 |
705 | F>Y | No |
ClinGen gnomAD |
|
|
rs1475308006 CA351905430 |
708 | G>S | No |
ClinGen Ensembl |
|
|
rs750415299 CA2288548 |
709 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1426301001 CA351905359 |
713 | H>Y | No |
ClinGen gnomAD |
|
|
CA351905294 rs1314235103 |
717 | N>S | No |
ClinGen TOPMed |
|
|
rs1162590623 CA351905277 |
718 | D>V | No |
ClinGen TOPMed gnomAD |
|
|
CA2288544 rs772148625 |
722 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA351905123 rs1261289154 |
729 | N>D | No |
ClinGen gnomAD |
|
|
CA351905088 rs1225276596 |
731 | D>N | No |
ClinGen gnomAD |
|
| TCGA novel | 746 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288533 rs754554733 |
748 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA351903884 rs1246519283 |
748 | R>W | No |
ClinGen gnomAD |
|
|
CA2288531 RCV000886509 rs200930765 |
751 | L>I | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs749936333 CA2288529 |
758 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA2288528 rs765115114 |
761 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 762 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351903321 rs1424754243 |
771 | S>C | No |
ClinGen TOPMed |
|
| TCGA novel | 771 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351903284 rs1434014668 |
776 | S>L | No |
ClinGen gnomAD |
|
|
CA2288524 rs781633604 |
777 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351903277 rs1162333855 |
778 | Y>H | No |
ClinGen TOPMed |
|
| TCGA novel | 780 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA71640091 rs753154522 |
783 | Q>R | No |
ClinGen Ensembl |
|
|
rs372310695 CA2288500 COSM3660466 |
785 | L>F | liver [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs1458841406 CA351903196 |
787 | M>T | No |
ClinGen TOPMed |
|
|
rs765406415 CA2288499 |
789 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288498 rs762212071 |
789 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs765406415 CA351903185 |
789 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 791 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs769043942 CA2288497 |
792 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs769043942 CA2288496 |
792 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1215593958 CA351903164 |
792 | L>W | No |
ClinGen gnomAD |
|
|
rs368712197 CA2288494 |
800 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1025888594 CA71640054 |
801 | N>D | No |
ClinGen TOPMed |
|
|
rs374915408 CA71640048 |
802 | I>V | No |
ClinGen ESP |
|
|
rs771685976 CA2288492 |
803 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs767985627 CA2288491 |
806 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351903055 rs1361375764 |
808 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
rs530627462 CA2288490 |
808 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs950258326 CA71640024 |
814 | R>Q | No |
ClinGen gnomAD |
|
|
CA2288488 rs748753622 |
817 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA351902858 rs1179580152 |
830 | M>V | No |
ClinGen gnomAD |
|
|
CA351902602 rs1262305413 |
833 | T>A | No |
ClinGen TOPMed |
|
|
rs1318823818 CA351902589 |
833 | T>I | No |
ClinGen TOPMed |
|
|
rs769739428 CA2288469 |
834 | L>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351902538 rs1325892579 |
836 | R>S | No |
ClinGen gnomAD |
|
|
CA351902431 rs1366192670 |
842 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs373490528 CA2288468 |
845 | N>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288466 rs754886368 |
845 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs373490528 CA2288467 |
845 | N>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA351902318 rs1330040822 |
847 | L>P | No |
ClinGen gnomAD |
|
|
rs1479769291 CA351902324 |
847 | L>V | No |
ClinGen TOPMed |
|
|
CA351900825 rs1575571597 |
850 | L>P | No |
ClinGen Ensembl |
|
|
rs1463770679 CA351900817 |
851 | Y>C | No |
ClinGen gnomAD |
|
|
rs1199086075 CA351900769 |
855 | Q>E | No |
ClinGen TOPMed |
|
|
CA2288465 rs528995984 |
856 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 856 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288464 rs779135229 |
857 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351900723 rs1422730266 |
858 | E>D | No |
ClinGen gnomAD |
|
|
CA71639535 rs574427954 |
861 | W>* | No |
ClinGen Ensembl |
|
|
rs757437706 CA2288463 |
861 | W>L | No |
ClinGen ExAC gnomAD |
|
|
rs764132639 CA2288461 |
863 | I>S | No |
ClinGen ExAC gnomAD |
|
|
CA351900646 rs775618314 |
865 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288460 rs775618314 |
865 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351900612 rs1408833933 |
868 | M>V | No |
ClinGen TOPMed |
|
|
rs1462872787 CA351900560 |
874 | A>V | No |
ClinGen gnomAD |
|
|
rs1325958233 CA351900477 |
886 | P>L | No |
ClinGen gnomAD |
|
|
rs1310820547 CA351900465 |
888 | Y>C | No |
ClinGen gnomAD |
|
|
rs1332708734 CA351900467 |
888 | Y>N | No |
ClinGen TOPMed |
|
|
CA2288456 rs774601517 |
890 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1376770591 CA351900448 |
890 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 894 | V>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351900410 rs1443919019 |
896 | N>D | No |
ClinGen gnomAD |
|
|
CA351900397 rs1439771558 |
898 | R>G | No |
ClinGen gnomAD |
|
|
CA2288455 rs770579247 |
899 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs1303080575 CA351900389 |
899 | R>Q | No |
ClinGen gnomAD |
|
|
CA2288454 rs762553343 |
900 | M>I | No |
ClinGen ExAC gnomAD |
|
|
CA351900382 rs1172324114 |
900 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1160204621 CA351900367 |
902 | D>E | No |
ClinGen gnomAD |
|
|
CA351900369 rs1559498331 |
902 | D>G | No |
ClinGen Ensembl |
|
| TCGA novel | 902 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351900342 rs1282324185 |
906 | P>R | No |
ClinGen TOPMed |
|
|
CA351900334 rs1467517835 |
907 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1440295926 CA351900325 |
909 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
rs764984075 CA2288431 |
910 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs1488175992 CA351899811 |
910 | L>P | No |
ClinGen gnomAD |
|
|
CA351899808 rs1263856875 |
911 | P>A | No |
ClinGen TOPMed |
|
|
CA351899799 rs1284261303 |
912 | N>D | No |
ClinGen gnomAD |
|
|
rs1326636788 CA351899766 |
914 | K>E | No |
ClinGen Ensembl |
|
|
CA351899759 rs1488299159 |
914 | K>R | No |
ClinGen TOPMed |
|
|
CA2288430 rs372579874 |
919 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs768670311 CA2288428 |
921 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs746971399 CA71637507 |
923 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA2288427 rs746971399 |
923 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA2288426 rs759564813 |
935 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA351899427 rs1575569989 |
936 | V>A | No |
ClinGen Ensembl |
|
|
CA2288425 rs771831835 |
936 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351899396 rs1296072087 |
939 | R>G | No |
ClinGen gnomAD |
|
|
rs1188480316 CA351899341 |
941 | T>S | No |
ClinGen TOPMed |
|
|
rs1386449143 CA351899321 |
942 | V>A | No |
ClinGen TOPMed |
|
|
CA351899330 rs1368067227 |
942 | V>I | No |
ClinGen gnomAD |
|
|
rs745682659 CA2288424 |
951 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA2288423 rs564436755 |
951 | T>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1456452061 CA351899189 |
953 | T>A | No |
ClinGen gnomAD |
|
|
rs1457086465 CA351899070 |
956 | Y>C | No |
ClinGen gnomAD |
|
|
rs748419748 CA2288402 |
963 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs368588412 CA2288401 |
964 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
| TCGA novel | 966 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1446121457 CA351898907 |
969 | D>H | No |
ClinGen gnomAD |
|
|
CA2288400 rs768684309 |
971 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs1415211894 CA351898723 |
980 | E>A | No |
ClinGen gnomAD |
|
| TCGA novel | 981 | Y>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs188724401 CA71636882 |
982 | H>L | No |
ClinGen 1000Genomes |
|
|
rs1381459732 CA351898586 |
986 | T>A | No |
ClinGen gnomAD |
|
|
CA351898573 rs1178786940 |
986 | T>S | No |
ClinGen gnomAD |
|
|
CA351898501 rs1446363855 |
991 | V>M | No |
ClinGen TOPMed |
|
|
rs1230617892 COSM3767387 CA351898470 |
993 | M>V | liver [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1187928629 CA351898438 |
994 | T>N | No |
ClinGen TOPMed |
|
|
rs750775397 CA2288396 |
995 | E>D | No |
ClinGen ExAC |
|
|
rs371790869 CA2288394 |
1000 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA351898273 rs1413033829 |
1006 | L>R | No |
ClinGen TOPMed |
|
| TCGA novel | 1008 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 1010 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351898152 rs1355847168 |
1014 | T>S | No |
ClinGen gnomAD |
|
|
CA351898131 rs1286653884 |
1016 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 1019 | N>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1192643104 CA351897880 |
1023 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
CA351897883 rs1192643104 |
1023 | L>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 1025 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288372 rs767104853 |
1026 | H>L | No |
ClinGen ExAC gnomAD |
|
|
CA2288370 rs751563680 |
1027 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs759379681 CA2288371 |
1027 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA351897791 rs1271297127 |
1028 | G>E | No |
ClinGen gnomAD |
|
|
rs1575568775 CA351897805 |
1028 | G>R | No |
ClinGen Ensembl |
|
| TCGA novel | 1031 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288369 rs766308401 |
1036 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs766308401 CA351897568 |
1036 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1037 | Q>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288367 rs773012621 |
1041 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1310802188 CA351897401 |
1044 | F>L | No |
ClinGen gnomAD |
|
|
rs1294641230 CA351897354 |
1047 | R>* | No |
ClinGen gnomAD |
|
|
RCV000585374 rs1553640695 CA351897351 |
1047 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ClinVar Ensembl NCI-TCGA dbSNP |
|
rs1436322277 CA351897338 |
1048 | L>I | No |
ClinGen gnomAD |
|
| TCGA novel | 1049 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs776314891 CA2288364 |
1052 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288362 rs745953350 |
1054 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs774945475 CA2288361 |
1056 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1426524992 CA351897137 |
1057 | W>C | No |
ClinGen gnomAD |
|
|
rs75813619 CA2288360 CA2288359 |
1059 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1477634387 CA351897010 |
1063 | G>R | No |
ClinGen gnomAD |
|
|
CA351896982 rs1575568703 |
1064 | A>G | No |
ClinGen Ensembl |
|
|
CA351896951 rs1200588459 |
1066 | S>A | No |
ClinGen gnomAD |
|
|
rs564996284 CA71635962 |
1067 | T>A | No |
ClinGen 1000Genomes TOPMed |
|
|
rs1377585498 CA351896920 |
1067 | T>K | No |
ClinGen gnomAD |
|
|
rs1575568690 CA351896910 |
1068 | K>N | No |
ClinGen Ensembl |
|
|
rs754416844 CA2288354 |
1071 | N>D | No |
ClinGen ExAC |
|
|
CA2288353 rs751083091 |
1071 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1202622029 CA351896827 |
1072 | Q>R | No |
ClinGen gnomAD |
|
|
rs766255221 CA2288352 |
1074 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs768271461 CA71635933 |
1074 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs61756345 CA71635923 |
1075 | F>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1369405674 CA351896629 |
1081 | Q>E | No |
ClinGen gnomAD |
|
|
CA351896632 rs1369405674 |
1081 | Q>K | No |
ClinGen gnomAD |
|
|
CA71635907 rs868538857 |
1083 | K>E | No |
ClinGen Ensembl |
|
|
rs1559496502 CA351896595 |
1083 | K>R | No |
ClinGen Ensembl |
|
|
rs758360626 CA2288351 |
1086 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1087 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1452326060 CA351896481 |
1089 | R>S | No |
ClinGen TOPMed |
|
|
CA351896485 rs1257946580 |
1089 | R>T | No |
ClinGen gnomAD |
|
|
rs1559496450 CA351896477 |
1090 | S>P | No |
ClinGen Ensembl |
|
|
rs1389359921 CA351896400 |
1094 | L>M | No |
ClinGen gnomAD |
|
|
CA2288336 CA2288337 rs371050869 |
1096 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA351896332 rs1393829676 |
1097 | M>T | No |
ClinGen TOPMed |
|
|
rs1454077803 CA351896293 |
1099 | V>L | No |
ClinGen TOPMed |
|
|
CA351896265 rs1303281301 |
1100 | Q>R | No |
ClinGen gnomAD |
|
|
rs1013024921 CA71635778 |
1102 | G>R | No |
ClinGen TOPMed |
|
|
rs1702570767 RCV001192890 |
1103 | Y>C | No |
ClinVar dbSNP |
|
|
CA351896162 rs1373329654 |
1106 | D>E | No |
ClinGen gnomAD |
|
|
rs1160405354 CA351896136 |
1108 | V>L | No |
ClinGen gnomAD |
|
|
CA351896087 rs1463183477 |
1111 | W>C | No |
ClinGen TOPMed |
|
|
CA351896034 rs1420188084 |
1115 | Q>* | No |
ClinGen gnomAD |
|
|
rs746482048 CA2288335 |
1115 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351896002 rs1213981610 |
1118 | A>T | No |
ClinGen TOPMed |
|
|
CA71634128 rs941639397 |
1119 | A>S | No |
ClinGen TOPMed |
|
|
CA71634117 rs199573413 |
1120 | E>K | No |
ClinGen Ensembl |
|
|
CA351895978 rs1194817424 |
1121 | E>D | No |
ClinGen gnomAD |
|
|
rs1426286180 CA351895980 |
1121 | E>G | No |
ClinGen gnomAD |
|
|
rs763366235 CA2288323 |
1122 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351895956 rs1260266071 |
1124 | T>I | No |
ClinGen gnomAD |
|
|
rs1212091493 CA351895950 |
1125 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs867663436 CA71634105 |
1125 | Q>K | No |
ClinGen Ensembl |
|
|
rs1489187750 CA351895933 |
1127 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1265472340 CA351895926 |
1128 | H>Q | No |
ClinGen gnomAD |
|
|
rs1332183516 CA351895913 |
1130 | D>G | No |
ClinGen gnomAD |
|
|
CA2288322 rs773701354 |
1130 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1332183516 CA351895912 |
1130 | D>V | No |
ClinGen gnomAD |
|
|
rs1055233963 CA71634081 |
1131 | S>C | No |
ClinGen TOPMed |
|
|
CA2288321 rs770214865 |
1132 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs776890647 CA351895891 |
1134 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288319 rs776890647 |
1134 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1391586729 CA351895869 |
1137 | T>I | No |
ClinGen gnomAD |
|
|
rs1391586729 CA351895868 |
1137 | T>N | No |
ClinGen gnomAD |
|
|
CA71634052 rs867919882 |
1139 | S>* | No |
ClinGen Ensembl |
|
|
CA351895823 rs1460117891 |
1144 | N>S | No |
ClinGen gnomAD |
|
|
CA351895787 rs1162175211 |
1149 | M>L | No |
ClinGen TOPMed |
|
|
CA351895776 rs1475298548 |
1150 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
CA351895775 rs1475298548 |
1150 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs771634906 CA2288315 |
1154 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1212504028 CA351895720 |
1158 | K>N | No |
ClinGen gnomAD |
|
|
CA71634025 rs751607153 |
1159 | V>I | No |
ClinGen Ensembl |
|
|
CA2288312 rs369059292 |
1161 | E>G | No |
ClinGen ESP ExAC |
|
|
CA351895660 rs1466914723 |
1167 | D>G | No |
ClinGen gnomAD |
|
|
rs1400287615 CA351895664 |
1167 | D>N | No |
ClinGen TOPMed |
|
|
CA351895652 rs1337825991 |
1168 | A>G | No |
ClinGen TOPMed |
|
|
rs1195963469 CA351895656 |
1168 | A>T | No |
ClinGen gnomAD |
|
|
CA2288293 rs749242036 |
1170 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs777708678 CA2288292 |
1171 | R>* | No |
ClinGen ExAC gnomAD |
|
|
CA2288291 rs200043349 |
1171 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1375163082 CA351895612 |
1173 | V>F | No |
ClinGen gnomAD |
|
|
CA351895614 rs1375163082 |
1173 | V>I | No |
ClinGen gnomAD |
|
|
CA2288289 rs780372964 |
1174 | N>S | No |
ClinGen ExAC TOPMed |
|
|
rs758578708 CA2288288 |
1176 | L>I | No |
ClinGen ExAC gnomAD |
|
|
CA351895590 rs1349960311 |
1176 | L>P | No |
ClinGen TOPMed |
|
|
CA351895584 rs1381669519 |
1177 | K>R | No |
ClinGen gnomAD |
|
|
rs1280895431 CA351895564 |
1180 | S>P | No |
ClinGen TOPMed |
|
|
rs1441188108 CA351895557 |
1181 | P>S | No |
ClinGen TOPMed |
|
|
rs1158617573 CA351895541 |
1183 | D>E | No |
ClinGen gnomAD |
|
|
CA2288287 rs535234636 |
1186 | K>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs376036396 CA2288286 |
1187 | E>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373228314 CA2288285 |
1190 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs534487496 CA2288283 |
1191 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760982587 CA2288282 COSM1043365 |
1191 | A>V | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA2288280 rs767170715 |
1193 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA71633807 rs1026567968 |
1194 | E>D | No |
ClinGen Ensembl |
|
|
CA351895468 rs1263810161 |
1194 | E>V | No |
ClinGen TOPMed gnomAD |
|
|
RCV001301071 rs1702473280 |
1197 | D>H | No |
ClinVar dbSNP |
|
|
rs767831760 CA2288259 |
1198 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA351895420 rs1478686652 |
1199 | V>G | No |
ClinGen gnomAD |
|
|
CA71632405 rs886127233 |
1201 | S>C | No |
ClinGen Ensembl |
|
|
CA351895388 rs1248583050 |
1204 | R>Q | No |
ClinGen gnomAD |
|
|
rs1214386792 CA351895375 |
1206 | D>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs766070395 CA2288256 |
1207 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1208 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288255 rs762502755 |
1209 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs202045855 CA2288254 |
1209 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2288253 rs775581953 |
1210 | G>* | No |
ClinGen ExAC gnomAD |
|
|
rs775581953 CA71632370 |
1210 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs748145044 CA2288252 |
1210 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA351894954 rs1559494154 |
1212 | S>C | No |
ClinGen Ensembl |
|
|
rs1370339260 CA351894950 |
1213 | G>E | No |
ClinGen gnomAD |
|
|
rs768399732 CA2288250 |
1215 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA351894933 rs1441005998 |
1216 | I>V | No |
ClinGen gnomAD |
|
|
rs575822857 CA2288249 |
1217 | K>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1323511255 CA351894915 |
1218 | G>V | No |
ClinGen gnomAD |
|
|
rs778941587 CA2288248 |
1220 | V>D | No |
ClinGen ExAC gnomAD |
|
|
CA2288247 rs757532708 |
1221 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1427175440 CA351894885 |
1223 | P>R | No |
ClinGen gnomAD |
|
|
CA2288246 rs749338596 |
1223 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1194112676 CA351894875 |
1225 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA71632336 rs980344015 |
1226 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs868144278 CA71632332 |
1228 | L>F | No |
ClinGen Ensembl |
|
|
CA71632325 rs969883654 |
1228 | L>H | No |
ClinGen TOPMed |
|
|
rs374961196 CA2288244 |
1229 | Q>H | No |
ClinGen ESP ExAC |
|
|
rs1481069366 CA351894814 |
1234 | M>V | No |
ClinGen gnomAD |
|
|
rs555678688 CA2288240 |
1237 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs765906123 CA2288239 |
1238 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 1238 | Y>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351894760 rs1281680192 |
1242 | I>V | No |
ClinGen gnomAD |
|
|
CA351894750 rs1234136744 |
1243 | I>S | No |
ClinGen gnomAD |
|
|
rs749929449 CA2288238 |
1246 | I>S | No |
ClinGen ExAC gnomAD |
|
|
rs749929449 CA2288237 |
1246 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA2288235 rs761832827 |
1248 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288236 rs761832827 |
1248 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA351894717 rs1394927951 |
1249 | M>V | No |
ClinGen TOPMed |
|
|
CA351894701 rs1373594960 |
1251 | A>T | No |
ClinGen gnomAD |
|
|
rs1439761739 CA351894683 |
1253 | A>G | No |
ClinGen gnomAD |
|
|
COSM1043363 rs1297460082 CA351894687 |
1253 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
| TCGA novel | 1253 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1376988121 CA351894676 |
1254 | S>N | No |
ClinGen gnomAD |
|
|
rs1174211425 CA351894652 |
1257 | L>F | No |
ClinGen gnomAD |
|
|
rs768648887 CA71632274 |
1258 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
CA2288233 rs768648887 |
1258 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA2288232 rs760336286 |
1259 | K>T | No |
ClinGen ExAC gnomAD |
|
|
CA2288231 rs775398433 |
1261 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA2288230 rs771122264 |
1262 | K>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1263 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1236659306 CA351894582 |
1266 | D>G | No |
ClinGen TOPMed |
|
|
CA351894575 rs1301841330 |
1267 | T>I | No |
ClinGen TOPMed |
|
|
CA351894567 rs1419097094 |
1268 | A>V | No |
ClinGen gnomAD |
|
|
rs761346137 CA351894563 |
1269 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761346137 CA2288216 |
1269 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs374639096 CA71630280 |
1270 | V>I | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs374639096 CA71630278 |
1270 | V>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1265982013 CA351894529 |
1274 | F>S | No |
ClinGen gnomAD |
|
|
rs370835943 CA351894515 |
1275 | D>A | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA71630268 rs370835943 |
1275 | D>G | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA351894375 rs1259590962 |
1285 | G>S | No |
ClinGen gnomAD |
|
|
CA351894366 rs1213271286 |
1285 | G>V | No |
ClinGen gnomAD |
|
|
CA351894364 rs1392660662 |
1286 | A>T | No |
ClinGen Ensembl |
|
|
rs1336474982 CA351894347 |
1287 | G>E | No |
ClinGen gnomAD |
|
|
CA71630262 rs545080682 |
1287 | G>R | No |
ClinGen 1000Genomes TOPMed |
|
|
rs763909276 CA2288214 |
1290 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288212 rs775137220 |
1292 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA351894260 rs1382670607 |
1294 | S>T | No |
ClinGen gnomAD |
|
|
rs773366637 CA2288209 |
1295 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745498342 CA71630245 |
1297 | I>V | No |
ClinGen gnomAD |
|
|
rs576183684 CA2288208 |
1299 | K>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1023791529 CA71630193 |
1300 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs970274336 CA71630216 |
1300 | G>C | No |
ClinGen Ensembl |
|
|
rs1023791529 CA71630206 |
1300 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
rs769021123 CA2288205 |
1301 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776811297 CA2288206 |
1301 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1305 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288204 rs374634133 |
1305 | R>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1398451866 CA351894069 |
1308 | K>E | No |
ClinGen TOPMed gnomAD |
|
| rs781031811 | 1308 | K>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs780561278 CA2288202 |
1309 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288200 rs746245807 |
1310 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288201 rs746245807 |
1310 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1337749114 CA351893982 |
1312 | T>I | No |
ClinGen gnomAD |
|
|
rs922691747 CA71629565 |
1314 | V>E | No |
ClinGen Ensembl |
|
|
CA71629550 rs1053040496 |
1315 | R>K | No |
ClinGen Ensembl |
|
|
rs1329710272 CA351893911 |
1317 | T>I | No |
ClinGen gnomAD |
|
|
CA2288183 rs746192893 |
1318 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA2288182 rs17016875 |
1319 | T>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs756849814 CA2288181 |
1321 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749040597 CA2288180 |
1322 | G>C | No |
ClinGen ExAC |
|
|
rs777299582 CA2288179 |
1322 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs755593586 CA2288178 |
1324 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1365192265 COSM3427487 CA351893811 |
1326 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA351893770 rs1182016525 |
1330 | K>E | No |
ClinGen gnomAD |
|
|
CA2288176 rs767404382 |
1332 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs1437042753 CA351893754 |
1332 | R>W | No |
ClinGen gnomAD |
|
|
rs970727542 CA71629493 |
1337 | D>V | No |
ClinGen Ensembl |
|
|
CA351893651 rs1357785946 |
1340 | S>F | No |
ClinGen TOPMed |
|
|
rs754950050 CA2288175 |
1341 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs751332309 CA2288174 |
1342 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA351893628 rs1217548503 |
1343 | E>K | No |
ClinGen gnomAD |
|
|
CA351893614 rs1352852717 |
1344 | S>G | No |
ClinGen gnomAD |
|
|
rs766218507 CA2288173 |
1344 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA2288172 rs761936230 |
1346 | L>* | No |
ClinGen ExAC gnomAD |
|
|
rs1334394723 CA351893572 |
1346 | L>F | No |
ClinGen gnomAD |
|
| TCGA novel | 1348 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1315150677 CA351893546 |
1348 | E>G | No |
ClinGen gnomAD |
|
|
CA2288171 rs776846543 |
1353 | V>I | No |
ClinGen ExAC TOPMed |
|
|
CA2288170 rs561264666 |
1354 | I>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA71629474 rs867534073 |
1355 | P>S | No |
ClinGen Ensembl |
|
|
rs1409477202 CA351893411 |
1358 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs760755554 CA2288169 |
1360 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1469283526 CA351893374 |
1361 | R>T | No |
ClinGen gnomAD |
|
|
rs984814787 CA71624192 |
1366 | E>K | No |
ClinGen gnomAD |
|
|
CA351892849 rs1235974436 |
1373 | D>H | No |
ClinGen TOPMed |
|
|
CA351892829 rs1559492059 |
1374 | F>C | No |
ClinGen Ensembl |
|
|
rs1257386336 CA351892801 |
1377 | E>K | No |
ClinGen TOPMed |
|
|
CA2288158 rs538155573 |
1378 | E>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
RCV001306518 rs754798424 |
1378 | E>missing | No |
ClinVar dbSNP |
|
|
rs1337732642 CA351892751 |
1379 | D>E | No |
ClinGen gnomAD |
|
|
CA2288156 rs139649989 |
1380 | D>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA2288155 RCV001310479 rs779856514 |
1380 | D>E | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA351892730 rs1214501209 |
1381 | D>A | No |
ClinGen gnomAD |
|
|
CA71624153 rs1029237923 |
1381 | D>N | No |
ClinGen Ensembl |
|
|
COSM149342 CA351892717 rs1307919022 |
1382 | A>D | Variant assessed as Somatic; 0.0 impact. stomach [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA2288154 rs369748980 |
1383 | D>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs369748980 CA351892701 |
1383 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs766683917 CA71624145 |
1384 | D>A | No |
ClinGen Ensembl |
|
|
CA71624137 rs905375654 |
1384 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs750206462 CA2288153 |
1385 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351892651 rs1433538123 |
1386 | D>G | No |
ClinGen TOPMed |
|
|
rs764336382 CA2288152 |
1387 | D>Y | No |
ClinGen ExAC gnomAD |
|
| rs746857248 | 1388 | D>missing | Variant assessed as Somatic; 5.893e-05 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1469509639 CA351892599 |
1389 | N>D | No |
ClinGen TOPMed |
|
|
rs1433725542 CA351892562 |
1391 | D>Y | No |
ClinGen gnomAD |
|
|
rs1327532516 CA351892512 |
1394 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA351892500 rs115100264 |
1395 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs61751635 CA2288145 |
1398 | K>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs774941339 CA2288144 |
1399 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs1171171856 CA351892469 |
1399 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 1401 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288141 rs566991124 |
1401 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA351892456 rs1194552177 |
1402 | I>V | No |
ClinGen gnomAD |
|
|
rs1343214280 CA351892447 |
1403 | T>K | No |
ClinGen TOPMed |
|
|
rs1343214280 RCV001280715 CA351892446 |
1403 | T>R | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
CA2288140 rs769468426 |
1406 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs200166487 CA2288139 |
1408 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA2288138 rs780673104 |
1409 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA71624074 rs937253830 |
1411 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA351892393 rs937253830 |
1411 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
CA351892387 rs1575562317 |
1412 | P>A | No |
ClinGen Ensembl |
|
| TCGA novel | 1415 | G>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs768083848 CA2288137 |
1418 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1441252536 CA351892325 |
1420 | E>D | No |
ClinGen gnomAD |
|
|
CA2288135 rs202024012 |
1421 | Y>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA351892296 rs1354851315 |
1425 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA351892295 rs1354851315 |
1425 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA71624054 rs925047330 |
1426 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
CA71624039 rs74958133 |
1428 | S>* | No |
ClinGen Ensembl |
|
|
rs1397024084 CA351892272 |
1429 | K>E | No |
ClinGen gnomAD |
|
|
CA71624014 rs376657102 |
1430 | A>T | No |
ClinGen ESP TOPMed |
|
|
rs1169845159 CA351892260 |
1431 | T>P | No |
ClinGen TOPMed |
|
|
CA351892251 rs1454051920 |
1432 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1459928196 CA351892243 |
1433 | E>V | No |
ClinGen TOPMed |
|
|
CA351892224 rs1217564585 |
1434 | K>R | No |
ClinGen gnomAD |
|
|
rs1317130367 CA351892215 |
1435 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1317130367 CA351892217 |
1435 | S>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA71623094 rs1031171127 |
1437 | H>R | No |
ClinGen TOPMed |
|
|
CA71623093 rs944696965 |
1438 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1308794847 CA351892193 |
1439 | K>Q | No |
ClinGen TOPMed |
|
|
CA351892184 rs1357072633 |
1440 | K>E | No |
ClinGen gnomAD |
|
|
CA351892183 rs1357072633 |
1440 | K>Q | No |
ClinGen gnomAD |
|
| TCGA novel | 1441 | S>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA71623076 rs911869283 |
1441 | S>R | No |
ClinGen Ensembl |
|
| rs1293862281 | 1441 | S>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 1443 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA2288118 rs746482078 |
1446 | N>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288117 rs369645443 |
1447 | L>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| rs1354762612 | 1448 | F>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1290694927 CA351892115 |
1449 | S>L | No |
ClinGen gnomAD |
|
|
CA351892078 rs1454562451 |
1455 | Q>* | No |
ClinGen gnomAD |
|
|
rs1388182853 CA351892075 |
1455 | Q>L | No |
ClinGen gnomAD |
|
|
rs1157141731 CA351892069 |
1456 | K>T | No |
ClinGen gnomAD |
|
|
CA71623035 rs1043941524 |
1457 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
CA71623027 rs550510329 |
1458 | E>K | No |
ClinGen 1000Genomes gnomAD |
|
|
rs772022318 CA2288116 |
1459 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs370666167 CA2288101 |
1461 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1187202113 CA351891895 |
1463 | K>I | No |
ClinGen TOPMed |
|
|
CA351891859 rs1267880131 |
1465 | D>G | No |
ClinGen gnomAD |
|
| TCGA novel | 1466 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351891812 rs1353921390 |
1468 | E>G | No |
ClinGen gnomAD |
|
|
rs1264411814 CA351891794 |
1469 | E>G | No |
ClinGen TOPMed |
|
|
rs771418956 CA2288099 |
1470 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM264141 rs1253027961 CA351891782 |
1470 | D>Y | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA351891719 rs1188531188 |
1475 | F>L | No |
ClinGen TOPMed |
|
|
rs745398662 CA2288098 |
1476 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs954666241 CA71621710 |
1476 | S>P | No |
ClinGen Ensembl |
|
|
CA351891691 rs1295466684 |
1477 | P>L | No |
ClinGen gnomAD |
|
|
rs1372001389 CA351891658 |
1480 | G>C | No |
ClinGen gnomAD |
|
| TCGA novel | 1484 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351891597 rs1323070037 |
1485 | D>Y | No |
ClinGen gnomAD |
|
| TCGA novel | 1486 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771023574 CA2288096 |
1487 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs749064753 CA2288095 |
1489 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1022708055 CA71621674 |
1491 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs61751634 CA2288094 |
1491 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2288092 rs747263680 |
1494 | A>G | No |
ClinGen ExAC gnomAD |
|
|
CA71621660 rs895655528 |
1494 | A>T | No |
ClinGen TOPMed |
|
|
CA2288091 rs780325291 |
1496 | K>R | No |
ClinGen ExAC gnomAD |
|
|
RCV001304845 rs780325291 |
1496 | K>T | No |
ClinVar dbSNP |
|
|
CA71617747 rs970848715 |
1498 | K>E | No |
ClinGen TOPMed |
|
|
CA2288079 rs375477555 |
1499 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA351891265 rs1212879437 |
1501 | S>L | No |
ClinGen gnomAD |
|
|
CA351891264 rs1462307050 |
1502 | D>N | No |
ClinGen gnomAD |
|
|
rs1417575880 CA351891255 |
1502 | D>V | No |
ClinGen gnomAD |
|
|
rs370334603 CA71617686 |
1503 | T>I | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs572010388 CA2288076 |
1503 | T>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2288077 rs572010388 |
1503 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA2288075 rs773139821 |
1504 | V>F | No |
ClinGen ExAC gnomAD |
|
|
rs1192587351 CA351891219 |
1505 | P>L | No |
ClinGen gnomAD |
|
|
rs114586748 CA2288074 |
1505 | P>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2288072 rs780086570 |
1507 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA2288073 rs372987117 |
1507 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1463564581 CA351891191 |
1508 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs370692332 CA71617628 |
1508 | K>R | No |
ClinGen ESP TOPMed |
|
|
CA351891154 rs1340603495 |
1510 | A>V | No |
ClinGen gnomAD |
|
|
CA2288070 rs745904730 |
1512 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288068 rs757745774 |
1514 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs754408618 CA2288067 |
1515 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA2288065 rs756386480 |
1517 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs377505092 CA71617562 |
1518 | E>Q | No |
ClinGen ESP |
|
|
rs1473075676 CA351891012 |
1520 | V>L | No |
ClinGen gnomAD |
|
| TCGA novel | 1521 | N>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1237041601 CA351890993 |
1521 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA351890980 rs1185509246 |
1522 | S>Y | No |
ClinGen gnomAD |
|
|
rs1026762780 CA71617557 |
1523 | D>N | No |
ClinGen Ensembl |
|
|
CA2288064 rs374212244 |
1524 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA71617548 rs997012390 |
1524 | S>T | No |
ClinGen Ensembl |
|
|
CA2288062 rs759285369 |
1530 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs536401162 CA71617491 |
1530 | I>M | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA351890865 rs1216301360 |
1531 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
rs766056779 CA2288061 |
1531 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA2288060 rs766056779 |
1531 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs762560179 CA2288059 |
1532 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1445197376 CA351890811 |
1535 | T>A | No |
ClinGen gnomAD |
|
|
rs773221985 CA2288057 |
1536 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1433868032 CA351890796 |
1536 | T>I | No |
ClinGen gnomAD |
|
|
CA351890801 rs773221985 |
1536 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1339969530 CA351890789 |
1537 | P>S | No |
ClinGen gnomAD |
|
|
CA2288056 rs769790327 |
1538 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA71617459 rs769790327 |
1538 | K>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2288055 rs761472190 |
1539 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351890428 rs1483663562 |
1540 | K>E | No |
ClinGen gnomAD |
|
|
rs749334778 CA2288032 |
1542 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs773390957 CA2288031 |
1544 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA2288030 rs770192435 |
1545 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1302994452 CA351890379 |
1547 | R>S | No |
ClinGen gnomAD |
|
|
rs748760684 CA2288029 |
1549 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs549547888 CA2288026 |
1551 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1307278441 CA351890344 |
1553 | E>G | No |
ClinGen gnomAD |
|
|
rs1427932181 CA351890336 |
1554 | N>S | No |
ClinGen gnomAD |
|
|
CA2288022 rs764860175 |
1557 | D>N | Variant assessed as Somatic; 4.643e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1179318345 CA351890279 |
1562 | R>K | No |
ClinGen gnomAD |
|
|
CA351890257 rs1281095780 |
1565 | S>Y | No |
ClinGen TOPMed |
|
|
RCV000974971 CA2288019 rs17016865 |
1568 | T>A | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA71615469 rs924112348 |
1568 | T>R | No |
ClinGen TOPMed |
|
|
CA351890235 rs1164724604 |
1569 | S>G | No |
ClinGen Ensembl |
|
|
rs760424687 CA2288018 |
1569 | S>I | No |
ClinGen ExAC gnomAD |
|
|
CA351890228 rs1453970005 |
1570 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1453970005 CA351890229 |
1570 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA2287988 COSM1633105 rs777658332 |
1571 | K>T | liver [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs62638670 CA2287987 |
1572 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA71614168 rs375861627 |
1574 | K>T | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs767371578 CA2287985 |
1576 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs745816721 RCV001323462 |
1576 | S>missing | No |
ClinVar dbSNP |
|
|
rs759335330 CA2287984 |
1576 | S>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 1576 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs761909414 CA2287980 |
1580 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA351890144 rs576675356 |
1580 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs765403902 CA2287981 |
1580 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351890148 rs765403902 |
1580 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1382823491 CA541717187 |
1581 | S>* | No |
ClinGen gnomAD |
|
|
rs371211985 CA2287975 |
1587 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA351890089 rs1489309812 |
1588 | S>L | No |
ClinGen gnomAD |
|
|
CA2287974 rs775992395 |
1589 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA351890077 rs1383866836 |
1590 | F>S | No |
ClinGen TOPMed |
|
|
rs1575556818 CA351890068 |
1591 | P>L | No |
ClinGen Ensembl |
|
|
rs374901845 CA71614029 |
1592 | T>N | No |
ClinGen ESP |
|
|
rs894117804 CA71614027 |
1593 | E>K | No |
ClinGen TOPMed |
|
|
rs1229498309 CA351890036 |
1597 | L>V | No |
ClinGen gnomAD |
|
|
CA2287970 rs778588509 |
1598 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778588509 CA2287969 |
1598 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2287968 rs770531780 |
1599 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351890028 rs770531780 |
1599 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2287967 COSM264140 rs184041688 |
1599 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA gnomAD |
|
rs777323473 CA2287966 |
1600 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777323473 CA351890022 |
1600 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1600 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs192180550 CA2287963 |
1601 | G>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs752568171 CA2287964 |
1601 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA351890013 rs1449475384 |
1602 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1169938358 CA351890015 |
1602 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs764317223 CA2287962 |
1607 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs764317223 CA2287961 |
1607 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 1612 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA351889945 rs951523057 |
1612 | E>A | No |
ClinGen Ensembl |
|
|
CA71613984 rs951523057 |
1612 | E>G | No |
ClinGen Ensembl |
|
|
CA351889940 rs1559487871 |
1613 | S>P | No |
ClinGen Ensembl |
|
|
rs111812268 CA71613972 |
1614 | D>E | No |
ClinGen Ensembl |
|
|
CA71613976 rs1025788498 |
1614 | D>Y | No |
ClinGen TOPMed |
|
|
rs1575556701 CA351889906 |
1615 | E>V | No |
ClinGen Ensembl |
|
|
CA2287957 rs61739570 |
1617 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA2287955 rs374745650 |
1618 | D>E | No |
ClinGen ESP ExAC TOPMed |
|
|
rs764335718 CA2287956 |
1618 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA351889557 rs764335718 |
1618 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA2287952 rs776082271 |
1619 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA2287950 rs187350468 |
1620 | V>F | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA351889525 rs1332091071 |
1623 | A>T | No |
ClinGen gnomAD |
|
|
rs1301005143 CA351889514 |
1624 | M>I | No |
ClinGen gnomAD |
|
|
rs774627996 CA2287946 |
1624 | M>V | No |
ClinGen ExAC |
2 associated diseases with Q02880
[MIM: 609296]: B-cell immunodeficiency, distal limb anomalies, and urogenital malformations (BILU)
An autosomal dominant disorder characterized by humoral immunodeficiency with undetectable B cells, distal limb anomalies, dysmorphic facial features, and urogenital malformations. {ECO:0000269|PubMed:31409799, ECO:0000269|PubMed:32128574, ECO:0000269|PubMed:33459963}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant disorder characterized by humoral immunodeficiency with undetectable B cells, distal limb anomalies, dysmorphic facial features, and urogenital malformations. {ECO:0000269|PubMed:31409799, ECO:0000269|PubMed:32128574, ECO:0000269|PubMed:33459963}. Note=The disease is caused by variants affecting the gene represented in this entry.
No regional properties for Q02880
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q02880 | |||
Functions
| Description | ||
|---|---|---|
| EC Number | 5.6.2.2 | Enzymes altering nucleic acid conformation |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| ribonucleoprotein complex | A macromolecular complex that contains both RNA and protein molecules. |
10 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| chromatin binding | Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined, driven by ATP hydrolysis. The enzyme changes the linking number in multiples of 2. |
| enzyme binding | Binding to an enzyme, a protein with catalytic activity. |
| histone deacetylase binding | Binding to histone deacetylase. |
| metal ion binding | Binding to a metal ion. |
| protein C-terminus binding | Binding to a protein C-terminus, the end of a peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. |
| protein heterodimerization activity | Binding to a nonidentical protein to form a heterodimer. |
| protein kinase C binding | Binding to protein kinase C. |
8 GO annotations of biological process
| Name | Definition |
|---|---|
| axonogenesis | De novo generation of a long process of a neuron, including the terminal branched region. Refers to the morphogenesis or creation of shape or form of the developing axon, which carries efferent (outgoing) action potentials from the cell body towards target cells. |
| B cell differentiation | The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity. |
| DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
| forebrain development | The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions). |
| neuron migration | The characteristic movement of an immature neuron from germinal zones to specific positions where they will reside as they mature. |
| positive regulation of single stranded viral RNA replication via double stranded DNA intermediate | Any process that activates or increases the frequency, rate or extent of retroviral genome replication. |
| resolution of meiotic recombination intermediates | The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged. |
| sister chromatid segregation | The cell cycle process in which sister chromatids are organized and then physically separated and apportioned to two or more sets. |
6 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P11388 | TOP2A | DNA topoisomerase 2-alpha | Homo sapiens (Human) | PR |
| Q01320 | Top2a | DNA topoisomerase 2-alpha | Mus musculus (Mouse) | PR |
| Q64511 | Top2b | DNA topoisomerase 2-beta | Mus musculus (Mouse) | PR |
| O46374 | TOP2A | DNA topoisomerase 2-alpha | Sus scrofa (Pig) | PR |
| P41516 | Top2a | DNA topoisomerase 2-alpha | Rattus norvegicus (Rat) | PR |
| Q23670 | top-2 | DNA topoisomerase 2 top-2 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAKSGGCGAG | AGVGGGNGAL | TWVTLFDQNN | AAKKEESETA | NKNDSSKKLS | VERVYQKKTQ |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LEHILLRPDT | YIGSVEPLTQ | FMWVYDEDVG | MNCREVTFVP | GLYKIFDEIL | VNAADNKQRD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KNMTCIKVSI | DPESNIISIW | NNGKGIPVVE | HKVEKVYVPA | LIFGQLLTSS | NYDDDEKKVT |
| 190 | 200 | 210 | 220 | 230 | 240 |
| GGRNGYGAKL | CNIFSTKFTV | ETACKEYKHS | FKQTWMNNMM | KTSEAKIKHF | DGEDYTCITF |
| 250 | 260 | 270 | 280 | 290 | 300 |
| QPDLSKFKME | KLDKDIVALM | TRRAYDLAGS | CRGVKVMFNG | KKLPVNGFRS | YVDLYVKDKL |
| 310 | 320 | 330 | 340 | 350 | 360 |
| DETGVALKVI | HELANERWDV | CLTLSEKGFQ | QISFVNSIAT | TKGGRHVDYV | VDQVVGKLIE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VVKKKNKAGV | SVKPFQVKNH | IWVFINCLIE | NPTFDSQTKE | NMTLQPKSFG | SKCQLSEKFF |
| 430 | 440 | 450 | 460 | 470 | 480 |
| KAASNCGIVE | SILNWVKFKA | QTQLNKKCSS | VKYSKIKGIP | KLDDANDAGG | KHSLECTLIL |
| 490 | 500 | 510 | 520 | 530 | 540 |
| TEGDSAKSLA | VSGLGVIGRD | RYGVFPLRGK | ILNVREASHK | QIMENAEINN | IIKIVGLQYK |
| 550 | 560 | 570 | 580 | 590 | 600 |
| KSYDDAESLK | TLRYGKIMIM | TDQDQDGSHI | KGLLINFIHH | NWPSLLKHGF | LEEFITPIVK |
| 610 | 620 | 630 | 640 | 650 | 660 |
| ASKNKQELSF | YSIPEFDEWK | KHIENQKAWK | IKYYKGLGTS | TAKEAKEYFA | DMERHRILFR |
| 670 | 680 | 690 | 700 | 710 | 720 |
| YAGPEDDAAI | TLAFSKKKID | DRKEWLTNFM | EDRRQRRLHG | LPEQFLYGTA | TKHLTYNDFI |
| 730 | 740 | 750 | 760 | 770 | 780 |
| NKELILFSNS | DNERSIPSLV | DGFKPGQRKV | LFTCFKRNDK | REVKVAQLAG | SVAEMSAYHH |
| 790 | 800 | 810 | 820 | 830 | 840 |
| GEQALMMTIV | NLAQNFVGSN | NINLLQPIGQ | FGTRLHGGKD | AASPRYIFTM | LSTLARLLFP |
| 850 | 860 | 870 | 880 | 890 | 900 |
| AVDDNLLKFL | YDDNQRVEPE | WYIPIIPMVL | INGAEGIGTG | WACKLPNYDA | REIVNNVRRM |
| 910 | 920 | 930 | 940 | 950 | 960 |
| LDGLDPHPML | PNYKNFKGTI | QELGQNQYAV | SGEIFVVDRN | TVEITELPVR | TWTQVYKEQV |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| LEPMLNGTDK | TPALISDYKE | YHTDTTVKFV | VKMTEEKLAQ | AEAAGLHKVF | KLQTTLTCNS |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| MVLFDHMGCL | KKYETVQDIL | KEFFDLRLSY | YGLRKEWLVG | MLGAESTKLN | NQARFILEKI |
| 1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
| QGKITIENRS | KKDLIQMLVQ | RGYESDPVKA | WKEAQEKAAE | EDETQNQHDD | SSSDSGTPSG |
| 1150 | 1160 | 1170 | 1180 | 1190 | 1200 |
| PDFNYILNMS | LWSLTKEKVE | ELIKQRDAKG | REVNDLKRKS | PSDLWKEDLA | AFVEELDKVE |
| 1210 | 1220 | 1230 | 1240 | 1250 | 1260 |
| SQEREDVLAG | MSGKAIKGKV | GKPKVKKLQL | EETMPSPYGR | RIIPEITAMK | ADASKKLLKK |
| 1270 | 1280 | 1290 | 1300 | 1310 | 1320 |
| KKGDLDTAAV | KVEFDEEFSG | APVEGAGEEA | LTPSVPINKG | PKPKREKKEP | GTRVRKTPTS |
| 1330 | 1340 | 1350 | 1360 | 1370 | 1380 |
| SGKPSAKKVK | KRNPWSDDES | KSESDLEETE | PVVIPRDSLL | RRAAAERPKY | TFDFSEEEDD |
| 1390 | 1400 | 1410 | 1420 | 1430 | 1440 |
| DADDDDDDNN | DLEELKVKAS | PITNDGEDEF | VPSDGLDKDE | YTFSPGKSKA | TPEKSLHDKK |
| 1450 | 1460 | 1470 | 1480 | 1490 | 1500 |
| SQDFGNLFSF | PSYSQKSEDD | SAKFDSNEED | SASVFSPSFG | LKQTDKVPSK | TVAAKKGKPS |
| 1510 | 1520 | 1530 | 1540 | 1550 | 1560 |
| SDTVPKPKRA | PKQKKVVEAV | NSDSDSEFGI | PKKTTTPKGK | GRGAKKRKAS | GSENEGDYNP |
| 1570 | 1580 | 1590 | 1600 | 1610 | 1620 |
| GRKTSKTTSK | KPKKTSFDQD | SDVDIFPSDF | PTEPPSLPRT | GRARKEVKYF | AESDEEEDDV |
| DFAMFN |