P41219
Gene name |
PRPH (NEF4, PRPH1) |
Protein name |
Peripherin |
Names |
Neurofilament 4 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:5630 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for P41219
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-P41219-F1 | Predicted | AlphaFoldDB |
469 variants for P41219
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000057165 RCV001727557 CA217608 rs57451017 RCV002496748 |
9 | R>Q | Amyotrophic lateral sclerosis type 1 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV001095524 rs1943161245 |
64 | R>* | Amyotrophic lateral sclerosis [ClinVar] | Yes |
ClinVar dbSNP |
|
rs56843567 RCV000057164 RCV002295280 |
77 | R>missing | Amyotrophic lateral sclerosis, susceptibility to [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000057166 CA217610 VAR_083259 rs267607528 |
133 | R>P | ALS; unknown pathological significance [UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
rs58599399 RCV000057167 RCV000014706 RCV000523206 VAR_083260 CA123381 |
141 | D>Y | Amyotrophic lateral sclerosis, susceptibility to ALS; unknown pathological significance; leads to filamentous aggregate formation [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
| rs1208908386 | 1 | M>? | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1041094938 CA236660943 |
2 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1264598207 CA384683741 |
3 | H>Y | No |
ClinGen gnomAD |
|
|
rs1592295598 CA384683758 |
4 | H>P | No |
ClinGen Ensembl |
|
|
rs1471229386 CA384683772 |
5 | P>T | No |
ClinGen gnomAD |
|
|
CA6550754 rs754054521 |
6 | S>L | No |
ClinGen ExAC gnomAD |
|
|
rs1483760020 CA384683783 |
6 | S>P | No |
ClinGen gnomAD |
|
|
rs1309712192 CA384683798 |
7 | G>D | No |
ClinGen TOPMed |
|
|
rs779484903 CA6550755 |
10 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550757 rs772680117 |
11 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs373485129 CA6550756 |
11 | G>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA384683856 rs373485129 |
11 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA384683892 rs1363728891 |
13 | S>C | No |
ClinGen gnomAD |
|
|
CA384683896 rs1411743221 |
13 | S>N | No |
ClinGen gnomAD |
|
|
CA384683886 rs1363728891 |
13 | S>R | No |
ClinGen gnomAD |
|
|
CA236660966 rs923213032 |
14 | S>F | No |
ClinGen Ensembl |
|
|
CA6550758 rs778105468 |
14 | S>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1314564111 CA384683922 |
15 | T>P | No |
ClinGen gnomAD |
|
|
CA384683950 rs1322132882 |
16 | S>L | No |
ClinGen gnomAD |
|
|
CA6550760 rs376678474 |
17 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA384683959 rs1263321502 |
17 | Y>S | No |
ClinGen gnomAD |
|
|
CA236660975 rs888627788 |
18 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA384683970 rs888627788 |
18 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA6550761 rs542541750 |
19 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6550762 rs759251722 |
19 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1258643259 CA384684028 |
22 | G>S | No |
ClinGen gnomAD |
|
|
CA236660998 rs558026560 |
23 | P>L | No |
ClinGen Ensembl |
|
|
CA6550764 rs762608334 |
23 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1338698424 CA384684068 |
24 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA6550766 rs774087425 |
24 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA6550768 rs766623204 |
28 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550772 rs141815346 |
30 | G>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA384684162 rs1395309706 |
31 | A>D | No |
ClinGen gnomAD |
|
|
CA384684176 rs1383085693 |
32 | F>S | No |
ClinGen TOPMed |
|
|
rs1024637298 CA236661023 |
32 | F>V | No |
ClinGen TOPMed |
|
|
CA384684192 rs1228455551 |
33 | S>F | No |
ClinGen gnomAD |
|
|
CA6550773 rs765532063 |
34 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA236661029 rs756446756 |
35 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384684224 rs756446756 |
35 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756446756 CA6550774 |
35 | S>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758627336 CA384684245 |
37 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs758627336 CA6550775 |
37 | S>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 38 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384684261 rs1483779178 |
38 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
CA384684274 rs1241500550 |
39 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA384684279 rs1451600366 |
39 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA384684329 rs1386120108 |
42 | S>I | No |
ClinGen TOPMed |
|
|
CA236661041 rs1035810621 |
44 | R>H | No |
ClinGen Ensembl |
|
|
CA6550776 rs778359420 |
46 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1565657434 CA384684377 |
46 | L>V | No |
ClinGen Ensembl |
|
|
CA384684411 rs1565657450 |
49 | A>S | No |
ClinGen Ensembl |
|
| TCGA novel | 49 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 49 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384684445 rs780722021 |
50 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs780722021 CA6550779 |
50 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA384684462 rs1390603435 |
51 | P>A | No |
ClinGen gnomAD |
|
|
CA384684482 rs1435302223 |
51 | P>R | No |
ClinGen gnomAD |
|
|
rs1343593520 CA384684507 |
52 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1343593520 CA384684497 |
52 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1359167260 CA384684543 |
54 | S>* | No |
ClinGen gnomAD |
|
|
rs769460007 CA6550781 |
55 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs749111327 CA6550783 |
56 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749111327 CA6550784 |
56 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775084900 CA6550782 |
56 | R>S | No |
ClinGen ExAC gnomAD |
|
|
rs1261609683 CA384684637 |
58 | G>D | No |
ClinGen gnomAD |
|
|
CA384684659 rs1466543237 |
59 | S>R | No |
ClinGen gnomAD |
|
|
CA384684730 rs1247716927 |
61 | R>H | No |
ClinGen gnomAD |
|
|
rs767527547 CA236661083 |
63 | P>H | No |
ClinGen ExAC gnomAD |
|
|
rs767527547 CA6550787 |
63 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA6550790 rs564003476 |
64 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6550791 rs564003476 |
64 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1174211960 CA384684912 |
65 | A>T | No |
ClinGen gnomAD |
|
|
CA236661108 rs779739594 |
66 | G>E | No |
ClinGen Ensembl |
|
|
rs533069944 CA236661107 |
66 | G>R | No |
ClinGen 1000Genomes gnomAD |
|
|
CA6550794 rs543217008 |
67 | A>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs543217008 CA6550795 |
67 | A>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA384685019 rs1293643237 |
68 | G>D | No |
ClinGen gnomAD |
|
|
rs1295757248 CA384685016 |
68 | G>S | No |
ClinGen TOPMed |
|
|
CA6550797 rs757810945 |
69 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1281938939 CA384685119 |
72 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA6550798 rs781629755 |
72 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 72 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384685132 rs781629755 |
72 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384685225 rs1283800952 |
76 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA236661133 rs749659877 |
77 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550799 rs749659877 |
77 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 77 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6550800 rs755554237 |
77 | R>P | No |
ClinGen ExAC gnomAD |
|
|
CA384685318 rs1247316233 |
78 | L>V | No |
ClinGen gnomAD |
|
|
CA384685374 rs1490210583 |
79 | D>N | No |
ClinGen gnomAD |
|
|
rs779768102 CA6550801 |
80 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA384685444 rs1472787496 |
80 | F>L | No |
ClinGen gnomAD |
|
|
CA384685470 rs1435309414 |
81 | S>C | No |
ClinGen gnomAD |
|
|
rs1405304620 CA384685503 |
82 | M>T | No |
ClinGen TOPMed gnomAD |
|
|
CA6550803 rs748951608 |
83 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550802 rs748951608 |
83 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs373110647 CA6550804 |
84 | E>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA236661153 rs923098209 |
84 | E>V | No |
ClinGen TOPMed gnomAD |
|
|
CA6550805 rs188289949 |
86 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1301826636 CA384685650 |
86 | L>H | No |
ClinGen gnomAD |
|
|
rs1301826636 CA384685657 |
86 | L>P | No |
ClinGen gnomAD |
|
|
CA384685699 TCGA novel rs1410789523 |
87 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen gnomAD |
|
CA6550806 rs772155676 |
87 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA384685709 rs1279299343 |
88 | Q>* | No |
ClinGen gnomAD |
|
|
rs1279299343 CA384685716 |
88 | Q>K | No |
ClinGen gnomAD |
|
|
CA6550807 rs773240305 |
88 | Q>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 90 | F>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384685757 rs1592295898 |
90 | F>V | No |
ClinGen Ensembl |
|
|
CA6550808 rs759705655 |
91 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384685865 rs1290863566 |
92 | A>T | No |
ClinGen gnomAD |
|
|
CA384685944 rs1358814804 |
94 | R>H | No |
ClinGen gnomAD |
|
|
CA6550810 rs139616660 |
95 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA384686045 rs1483362381 |
96 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
CA6550812 rs763128503 |
99 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs1224101129 CA384686337 |
103 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA384686383 rs1330438270 |
104 | L>H | No |
ClinGen TOPMed |
|
|
CA384686366 rs1384291926 |
104 | L>I | No |
ClinGen gnomAD |
|
|
rs1169981613 CA384686472 |
106 | D>H | No |
ClinGen gnomAD |
|
|
rs1370671302 CA384686514 |
107 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA6550818 rs750870193 |
108 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA384686552 rs1328790298 |
108 | F>L | No |
ClinGen gnomAD |
|
|
CA6550819 rs756599531 |
109 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779496281 CA6550820 |
110 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1299862692 CA384686718 |
113 | E>A | No |
ClinGen gnomAD |
|
|
CA384686733 rs1342987599 |
113 | E>D | No |
ClinGen gnomAD |
|
|
CA384686817 rs1195090677 |
116 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA384686818 rs1195090677 |
116 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1270881574 CA384686827 |
116 | R>H | No |
ClinGen gnomAD |
|
|
rs769037340 CA6550823 |
117 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550824 rs202018401 RCV000913079 |
118 | L>M | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA384687036 rs1242110424 |
120 | Q>P | No |
ClinGen gnomAD |
|
|
rs548855985 CA6550825 |
123 | A>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 124 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384687223 rs1197221955 |
124 | A>T | No |
ClinGen TOPMed |
|
|
CA384687308 rs369251303 |
126 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs922629001 CA236661226 |
126 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA6550827 rs369251303 |
126 | R>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs775482707 CA6550829 |
127 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384687367 rs775482707 |
127 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384687417 rs1405845181 |
128 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
CA384687411 rs1405845181 |
128 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA384687413 rs1405845181 |
128 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA6550830 rs547795319 |
128 | E>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA384687486 rs1592296051 |
131 | Q>K | No |
ClinGen Ensembl |
|
|
rs1240951897 CA384687498 |
131 | Q>R | No |
ClinGen TOPMed |
|
|
rs1268328407 CA384687538 |
132 | A>G | No |
ClinGen gnomAD |
|
|
CA384687512 rs1226867192 |
132 | A>T | No |
ClinGen gnomAD |
|
|
rs1268328407 CA384687540 |
132 | A>V | No |
ClinGen gnomAD |
|
|
CA384687559 rs267607528 |
133 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA6550832 rs774567980 |
134 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs570825092 CA6550833 |
135 | Q>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA384689665 rs1210133700 |
137 | P>L | No |
ClinGen gnomAD |
|
|
rs1459825697 CA384689654 |
137 | P>S | No |
ClinGen gnomAD |
|
|
CA6550834 rs767924454 |
138 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1190460159 CA384689695 |
139 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs58599399 CA236661275 |
141 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1428955765 CA384689766 |
142 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
rs761209771 CA6550835 CA236661284 |
142 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1183691714 CA384689862 |
145 | Q>* | No |
ClinGen TOPMed |
|
|
rs1057230121 CA236661290 |
147 | E>* | No |
ClinGen Ensembl |
|
|
CA384690056 rs1332929942 |
150 | E>* | No |
ClinGen gnomAD |
|
|
rs1437037701 CA384690065 |
150 | E>V | No |
ClinGen gnomAD |
|
|
rs1230062634 CA384690088 |
151 | L>P | No |
ClinGen gnomAD |
|
|
CA6550837 rs766884197 |
152 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1203035663 CA384690153 |
154 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 154 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1268775215 CA384690173 |
155 | L>P | No |
ClinGen gnomAD |
|
|
rs183823142 CA236661296 |
156 | E>Q | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
CA384690250 rs1267185006 |
159 | G>D | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 160 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6550838 rs753306967 |
160 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1364774068 CA384690275 |
161 | E>K | No |
ClinGen gnomAD |
|
|
CA384690315 rs906212871 |
162 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA384690331 rs1157061609 |
162 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA236661306 rs906212871 |
162 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA384690345 rs1392889969 |
163 | D>E | No |
ClinGen gnomAD |
|
|
CA6550840 rs778432292 |
164 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs748642294 CA384690411 |
165 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs748642294 CA236661313 |
165 | V>E | No |
ClinGen TOPMed gnomAD |
|
|
CA384690374 rs1302454838 |
165 | V>L | No |
ClinGen gnomAD |
|
|
CA384690455 rs1411393724 |
166 | Q>H | No |
ClinGen gnomAD |
|
|
rs1384483492 CA384690445 |
166 | Q>R | No |
ClinGen TOPMed |
|
|
CA236661316 rs1030647594 |
167 | V>M | No |
ClinGen TOPMed |
|
|
rs1221158690 CA384690721 |
175 | D>G | No |
ClinGen gnomAD |
|
|
CA384690687 rs1356429099 |
175 | D>N | No |
ClinGen gnomAD |
|
|
CA384690761 rs1489992625 |
177 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1489992625 CA384690762 |
177 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1185002008 CA384690785 |
178 | A>V | No |
ClinGen gnomAD |
|
|
CA384690844 rs1418868491 |
180 | K>N | No |
ClinGen gnomAD |
|
|
CA6550843 rs758122139 |
181 | Q>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs772250266 CA6550852 |
182 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA6550855 rs547436039 |
185 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6550856 rs547436039 |
185 | E>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1466295863 CA384691089 |
186 | E>K | No |
ClinGen gnomAD |
|
|
CA384691127 rs374240342 |
187 | T>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6550858 rs374240342 COSM1239959 |
187 | T>M | oesophagus [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs763900023 CA6550860 |
188 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1429649764 CA384691141 |
188 | R>H | No |
ClinGen gnomAD |
|
|
rs763900023 CA384691136 |
188 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs997994269 CA236661541 |
189 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs758177562 CA6550861 |
190 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA384691211 rs1430780401 |
191 | E>D | No |
ClinGen gnomAD |
|
|
rs763791625 CA384691198 |
191 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA6550862 rs763791625 |
191 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA6550865 rs373867021 |
193 | A>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6550866 rs373867021 |
193 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1362099 CA6550864 rs757012126 |
193 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA6550867 rs373867021 |
193 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6550869 rs748203416 |
194 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550870 rs748203416 |
194 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384691328 rs1592296581 |
196 | N>T | No |
ClinGen Ensembl |
|
|
rs201461661 CA236661572 |
197 | L>F | No |
ClinGen 1000Genomes |
|
|
COSM357209 rs867804476 CA236661592 |
198 | V>M | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA6550872 rs550236164 |
199 | L>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1318919618 CA384691429 |
201 | R>L | No |
ClinGen gnomAD |
|
| TCGA novel | 201 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771266311 CA384691433 |
202 | K>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771266311 CA6550873 |
202 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384691562 rs1218002916 |
203 | D>A | No |
ClinGen TOPMed |
|
|
CA384691563 rs1218002916 |
203 | D>G | No |
ClinGen TOPMed |
|
|
CA6550894 rs770455313 |
205 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs762568255 CA6550896 |
207 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1356640295 CA384691638 |
207 | A>V | No |
ClinGen gnomAD |
|
|
CA384691651 rs1443460916 |
208 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA384691643 rs1303146893 |
208 | T>S | No |
ClinGen TOPMed |
|
|
rs566340428 CA6550899 |
209 | L>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs566340428 CA6550898 |
209 | L>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1248480832 CA384691679 |
210 | S>Y | No |
ClinGen gnomAD |
|
|
CA6550900 rs767054458 |
211 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1565658401 CA384691715 |
213 | E>Q | No |
ClinGen Ensembl |
|
|
rs760342609 CA6550903 |
214 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs1592296787 CA384691764 |
216 | R>C | No |
ClinGen Ensembl |
|
|
rs1438170924 CA384691767 |
216 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1438170924 CA384691771 |
216 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA384691851 rs879191404 |
219 | E>D | No |
ClinGen gnomAD |
|
|
CA384691837 rs1456556198 |
219 | E>G | No |
ClinGen TOPMed |
|
|
rs766304398 CA6550904 |
220 | S>P | No |
ClinGen ExAC gnomAD |
|
|
CA384691897 rs1402620071 |
222 | M>T | No |
ClinGen TOPMed |
|
|
rs753714614 CA6550905 |
223 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA6550907 rs754893736 |
224 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550908 rs777872950 |
225 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774399677 CA6550906 |
227 | F>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1434081849 CA384692070 |
228 | L>R | No |
ClinGen TOPMed |
|
|
rs757526225 CA6550910 |
229 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
CA384692139 rs781236534 |
231 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1382114754 CA384692188 |
232 | H>Q | No |
ClinGen gnomAD |
|
|
CA384692177 rs1337638152 |
232 | H>R | No |
ClinGen gnomAD |
|
|
CA6550914 rs780554890 |
232 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs143427105 CA6550915 |
233 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6550916 rs535335349 |
234 | E>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA384692386 rs1565658650 |
235 | E>K | No |
ClinGen Ensembl |
|
|
rs749647167 CA6550931 |
236 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA6550932 COSM269952 rs559134311 |
237 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1400254853 CA384692459 |
240 | Q>* | No |
ClinGen gnomAD |
|
|
CA6550935 rs771422817 |
242 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA6550936 rs772761984 |
242 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1592297158 CA384692593 |
248 | V>G | No |
ClinGen Ensembl |
|
|
rs770551629 CA6550938 |
249 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384692616 rs770551629 |
249 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776436316 CA6550939 |
251 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs776436316 CA384692684 |
251 | V>G | No |
ClinGen ExAC gnomAD |
|
|
CA384692672 rs1240652388 |
251 | V>M | No |
ClinGen gnomAD |
|
|
rs759290424 CA6550940 |
252 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1592297183 CA384692725 |
253 | V>G | No |
ClinGen Ensembl |
|
|
CA384692715 rs1286605440 |
253 | V>M | No |
ClinGen Ensembl |
|
|
CA236662013 rs1012944743 |
254 | E>D | No |
ClinGen TOPMed |
|
|
rs775233209 CA6550942 |
254 | E>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA6550941 rs765228843 |
254 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs377519456 CA6550943 |
256 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1466082233 CA384692817 |
257 | V>G | No |
ClinGen TOPMed |
|
|
rs1268545592 CA384692932 |
261 | L>P | No |
ClinGen gnomAD |
|
|
CA384692972 rs1199913683 |
264 | A>T | No |
ClinGen TOPMed |
|
|
rs1364649865 CA384692981 |
264 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA6550947 rs766658115 |
266 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA6550948 rs754285563 |
267 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755327114 CA384693044 |
269 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755327114 CA6550949 |
269 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1053264674 CA236662047 |
271 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
rs1435392946 CA384693089 |
271 | Q>H | No |
ClinGen TOPMed |
|
|
CA6550951 rs748657555 |
272 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA384693143 rs1334844444 |
273 | E>D | No |
ClinGen gnomAD |
|
|
rs372527655 CA6550952 |
273 | E>K | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1368252959 CA384693186 |
275 | I>V | No |
ClinGen TOPMed |
|
|
rs144049800 CA6550953 |
276 | A>D | No |
ClinGen ESP ExAC |
|
|
RCV000057175 rs62636520 CA217621 |
277 | A>T | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA384693354 rs1487697198 |
283 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
TCGA novel CA6550956 rs745681247 |
284 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen ExAC gnomAD |
|
CA384693405 rs907173485 |
285 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs769538569 CA6550957 |
285 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA384693437 rs1387091733 |
286 | W>C | No |
ClinGen gnomAD |
|
|
CA384693415 rs1592297297 |
286 | W>G | No |
ClinGen Ensembl |
|
|
rs372095080 CA6550959 |
287 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs775353808 CA6550958 |
287 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs1454003804 CA384693512 |
289 | S>C | No |
ClinGen TOPMed |
|
| TCGA novel | 289 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384693537 rs1251318817 |
290 | K>R | No |
ClinGen TOPMed |
|
|
CA6550977 rs771978173 |
291 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA6550979 rs749060913 |
292 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA6550982 rs774360634 |
293 | D>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1565658961 CA384693882 |
297 | A>G | No |
ClinGen Ensembl |
|
|
CA384693932 rs1301844517 |
299 | N>S | No |
ClinGen gnomAD |
|
|
rs1217233140 CA384693945 |
300 | R>G | No |
ClinGen gnomAD |
|
|
rs1265192073 CA384694045 |
302 | H>L | No |
ClinGen gnomAD |
|
|
rs1265192073 CA384694050 |
302 | H>R | No |
ClinGen gnomAD |
|
|
rs994708350 CA236662280 |
303 | E>G | No |
ClinGen Ensembl |
|
|
CA6550985 rs771193001 |
303 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA6550986 rs367835294 |
304 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759715168 CA6550987 |
304 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA384694193 rs1261017451 |
306 | R>C | No |
ClinGen gnomAD |
|
|
rs1484921082 CA384694232 |
308 | A>T | No |
ClinGen TOPMed |
|
|
rs1201266678 CA384694280 |
309 | K>R | No |
ClinGen gnomAD |
|
|
rs1429769447 CA384694373 |
312 | M>I | No |
ClinGen gnomAD |
|
|
CA6550990 rs763312227 |
314 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs752122598 CA384694457 |
315 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752122598 CA6550992 |
315 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550993 rs757760129 |
316 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6550994 rs757760129 |
316 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 317 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1379844629 CA384694506 |
317 | R>L | No |
ClinGen TOPMed |
|
|
rs1026096225 CA236662346 |
317 | R>S | No |
ClinGen TOPMed |
|
|
CA384694604 rs1285529799 |
321 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
rs755741665 CA6550997 |
321 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749037769 CA6550999 |
323 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778838111 CA6551002 |
324 | C>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA384694659 rs1157043047 |
324 | C>S | No |
ClinGen TOPMed |
|
|
rs778838111 CA6551001 |
324 | C>W | No |
ClinGen ExAC gnomAD |
|
|
rs1425592059 CA384694686 |
325 | E>K | No |
ClinGen TOPMed |
|
|
rs759622647 CA6551005 |
328 | G>W | No |
ClinGen ExAC gnomAD |
|
|
CA6551007 rs563743745 |
331 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 331 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6551006 rs563743745 |
331 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1281351800 CA384694818 |
332 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
CA6551026 rs768846672 |
333 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA6551027 rs774723000 |
334 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384694902 rs1166004455 |
334 | E>A | No |
ClinGen gnomAD |
|
|
rs774723000 CA6551028 |
334 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs980280041 CA236662569 |
335 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs768013983 CA6551029 |
335 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA6551030 rs773707575 |
337 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1356654705 CA384694982 |
338 | R>G | No |
ClinGen gnomAD |
|
|
rs1331013106 CA384695026 |
339 | Q>E | No |
ClinGen gnomAD |
|
|
rs1454697514 CA384695078 |
341 | R>G | No |
ClinGen gnomAD |
|
| TCGA novel | 344 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753255815 CA6551034 |
345 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754725165 CA6551035 |
346 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1274782916 CA384695277 |
348 | A>T | No |
ClinGen gnomAD |
|
|
rs377665045 CA236662594 |
349 | L>P | No |
ClinGen ESP |
|
|
rs764932638 CA6551037 |
351 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA6551039 rs758211963 |
352 | G>E | No |
ClinGen ExAC gnomAD |
|
| rs765336123 | 353 | G>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs777418543 CA6551040 |
353 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777418543 CA384695429 |
353 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 354 | Y>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6551043 rs757115552 |
355 | Q>E | No |
ClinGen ExAC |
|
|
rs757115552 CA6551042 |
355 | Q>K | No |
ClinGen ExAC |
|
|
rs749320316 CA384695520 |
356 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6551044 rs749320316 |
356 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6551045 rs768899850 |
357 | G>C | No |
ClinGen ExAC gnomAD |
|
|
rs989014427 CA236662682 |
357 | G>D | No |
ClinGen gnomAD |
|
|
rs748522272 CA6551047 |
358 | A>D | No |
ClinGen ExAC gnomAD |
|
|
rs748522272 CA6551048 |
358 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA6551049 rs773441319 |
359 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs370910135 CA6551050 |
360 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA384695595 rs1592297740 |
360 | R>W | No |
ClinGen Ensembl |
|
|
rs796364482 CA236662744 |
361 | L>R | No |
ClinGen Ensembl |
|
|
CA6551053 rs764997995 |
362 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs759075246 CA6551052 |
362 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs762690778 CA6551055 |
364 | E>* | No |
ClinGen ExAC gnomAD |
|
|
rs1255955007 CA384695727 |
364 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs762690778 CA384695695 |
364 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs763994010 CA384695737 |
365 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6551058 rs757243807 |
366 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
RCV000057158 rs59827092 CA217600 |
370 | E>K | No |
ClinGen ClinVar Ensembl dbSNP |
|
| TCGA novel | 371 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6551060 rs535948895 |
372 | M>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs372792711 CA236662811 |
372 | M>T | No |
ClinGen ESP TOPMed |
|
|
CA384695992 rs1438745279 |
373 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1478337414 CA384695996 |
374 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA384696088 rs1193341068 |
377 | R>T | No |
ClinGen gnomAD |
|
|
rs778946909 CA6551061 |
379 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA384696151 rs1461905306 |
380 | Q>* | No |
ClinGen TOPMed |
|
|
rs1412896660 CA384696290 |
385 | V>I | No |
ClinGen gnomAD |
|
|
rs1320180235 CA384696378 |
387 | M>I | No |
ClinGen gnomAD |
|
|
CA384696386 rs1433424002 |
388 | A>T | No |
ClinGen TOPMed |
|
|
CA236662865 rs573517274 |
390 | D>G | No |
ClinGen Ensembl |
|
|
CA384696415 rs1345673942 |
390 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA384696454 rs1277031848 |
391 | I>M | No |
ClinGen gnomAD |
|
|
CA384696461 rs1366107167 |
392 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
COSM1222189 rs374358956 CA6551064 |
394 | A>T | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs1276008196 CA384696501 |
394 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1592297826 CA384696504 |
395 | T>P | No |
ClinGen Ensembl |
|
|
CA384696517 rs1223747220 |
396 | Y>N | No |
ClinGen gnomAD |
|
|
CA384696532 rs1273943639 |
397 | R>G | No |
ClinGen gnomAD |
|
|
CA236662888 rs898613415 |
397 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA384696536 rs898613415 |
397 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
rs867829554 CA236662897 |
398 | K>E | No |
ClinGen Ensembl |
|
|
rs771499140 CA6551067 |
399 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs777222242 CA6551068 |
400 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs760108980 CA6551069 |
402 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs769495956 CA6551070 |
403 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA384696748 rs1377333073 |
405 | S>G | No |
ClinGen TOPMed gnomAD |
|
|
CA6551071 rs775110656 |
405 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA384696790 rs1160325784 |
406 | R>Q | No |
ClinGen gnomAD |
|
|
CA384698420 rs1375285473 |
408 | S>T | No |
ClinGen TOPMed |
|
|
CA6551092 rs761510804 |
409 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6551094 rs772957397 |
410 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760653849 CA6551095 |
412 | H>P | No |
ClinGen ExAC gnomAD |
|
|
CA236663136 rs1024153286 |
414 | F>L | No |
ClinGen Ensembl |
|
|
CA6551097 rs752803181 |
414 | F>S | No |
ClinGen ExAC gnomAD |
|
|
rs1592298055 CA384698553 |
415 | A>G | No |
ClinGen Ensembl |
|
|
rs1565659443 CA384698571 |
416 | S>F | No |
ClinGen Ensembl |
|
| TCGA novel | 418 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6551099 rs764222014 |
419 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384698627 rs1468123702 |
419 | I>R | No |
ClinGen TOPMed |
|
|
rs758341559 CA6551098 |
419 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA384698747 rs1397070597 |
423 | V>G | No |
ClinGen TOPMed |
|
|
rs1565659564 CA384698755 |
424 | P>L | No |
ClinGen Ensembl |
|
|
rs1487220220 CA384698778 |
426 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs778332226 CA6551127 |
428 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs755474867 CA6551126 |
428 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs1468125082 CA384698837 |
430 | Q>E | No |
ClinGen TOPMed |
|
|
rs747644623 CA6551128 |
430 | Q>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 430 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1436328226 CA384698860 |
431 | D>N | No |
ClinGen gnomAD |
|
|
rs777337968 CA6551130 |
432 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs1421982636 CA384698933 |
433 | H>Q | No |
ClinGen gnomAD |
|
|
CA384698973 rs1438829657 |
435 | R>Q | No |
ClinGen TOPMed |
|
|
CA6551132 rs146828143 |
435 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6551133 rs776458294 |
436 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6551134 rs759441068 |
436 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA384699012 rs1213123705 |
437 | T>A | No |
ClinGen TOPMed |
|
|
rs1213123705 CA384699014 |
437 | T>S | No |
ClinGen TOPMed |
|
|
CA384699065 rs1368522131 |
440 | I>V | No |
ClinGen gnomAD |
|
|
CA236663534 rs1015261524 |
441 | K>T | No |
ClinGen TOPMed |
|
|
CA6551138 rs767867687 |
442 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs750734860 CA6551139 |
442 | T>S | No |
ClinGen ExAC gnomAD |
|
|
COSM3720309 rs1285284536 CA384699143 |
443 | I>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs1240769688 CA384699131 |
443 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1353797667 CA384699165 |
444 | E>G | No |
ClinGen TOPMed |
|
|
rs1351195700 CA384699209 |
445 | T>I | No |
ClinGen gnomAD |
|
|
rs1351195700 CA384699207 |
445 | T>N | No |
ClinGen gnomAD |
|
|
rs1238078859 CA384699186 |
445 | T>P | No |
ClinGen gnomAD |
|
|
rs1415924526 CA384699270 |
447 | N>K | No |
ClinGen TOPMed |
|
|
rs1592298577 CA384699483 |
450 | V>G | No |
ClinGen Ensembl |
|
|
CA384699505 rs1592298593 |
451 | V>G | No |
ClinGen Ensembl |
|
|
CA236663733 rs141716253 |
451 | V>L | No |
ClinGen ESP gnomAD |
|
|
CA384699622 rs1177428198 |
453 | E>D | No |
ClinGen gnomAD |
|
|
rs147068303 CA6551153 |
454 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368012227 CA6551154 |
456 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA384699791 rs1290903130 |
457 | E>K | No |
ClinGen TOPMed |
|
|
rs772341743 CA6551156 |
459 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA384699901 rs982729267 |
459 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA236663754 rs982729267 |
459 | R>L | No |
ClinGen gnomAD |
|
|
CA384699911 rs1344753881 |
460 | S>G | No |
ClinGen TOPMed |
|
|
rs890579840 CA236663757 |
461 | E>D | No |
ClinGen TOPMed |
|
|
rs1472909636 CA384699944 |
461 | E>K | No |
ClinGen gnomAD |
|
|
rs1402673878 CA384699989 |
463 | D>H | No |
ClinGen gnomAD |
|
|
rs773391662 CA6551157 |
465 | S>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761025113 CA6551158 |
467 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1450117653 CA384700087 |
468 | H>N | No |
ClinGen gnomAD |
|
| TCGA novel | 470 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA384700167 rs1378149052 |
470 | Y>H | No |
ClinGen gnomAD |
|
|
CA384700176 rs1164699387 |
470 | Y>S | No |
ClinGen TOPMed |
|
|
rs138186252 CA6551161 |
471 | Y>R | No |
ClinGen ESP ExAC gnomAD |
1 associated diseases with P41219
[MIM: 105400]: Amyotrophic lateral sclerosis (ALS)
A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. {ECO:0000269|PubMed:15322088, ECO:0000269|PubMed:15446584, ECO:0000269|PubMed:20363051}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
Without disease ID
- A neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. {ECO:0000269|PubMed:15322088, ECO:0000269|PubMed:15446584, ECO:0000269|PubMed:20363051}. Note=Disease susceptibility may be associated with variants affecting the gene represented in this entry.
8 GO annotations of cellular component
| Name | Definition |
|---|---|
| axon | The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| intermediate filament | A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| perikaryon | The portion of the cell soma (neuronal cell body) that excludes the nucleus. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| type III intermediate filament | A type of intermediate filament, typically made up of one or more of the proteins vimentin, desmin, glial fibrillary acidic protein (GFAP), and peripherin. Unlike the keratins, the type III proteins can form both homo- and heteropolymeric IF filaments. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. |
| structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| intermediate filament organization | Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking. |
8 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P17661 | DES | Desmin | Homo sapiens (Human) | PR |
| P14136 | GFAP | Glial fibrillary acidic protein | Homo sapiens (Human) | PR |
| P08670 | VIM | Vimentin | Homo sapiens (Human) | PR |
| P03995 | Gfap | Glial fibrillary acidic protein | Mus musculus (Mouse) | PR |
| P31001 | Des | Desmin | Mus musculus (Mouse) | PR |
| P20152 | Vim | Vimentin | Mus musculus (Mouse) | PR |
| P15331 | Prph | Peripherin | Mus musculus (Mouse) | PR |
| P21807 | Prph | Peripherin | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSHHPSGLRA | GFSSTSYRRT | FGPPPSLSPG | AFSYSSSSRF | SSSRLLGSAS | PSSSVRLGSF |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RSPRAGAGAL | LRLPSERLDF | SMAEALNQEF | LATRSNEKQE | LQELNDRFAN | FIEKVRFLEQ |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QNAALRGELS | QARGQEPARA | DQLCQQELRE | LRRELELLGR | ERDRVQVERD | GLAEDLAALK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| QRLEEETRKR | EDAEHNLVLF | RKDVDDATLS | RLELERKIES | LMDEIEFLKK | LHEEELRDLQ |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VSVESQQVQQ | VEVEATVKPE | LTAALRDIRA | QYESIAAKNL | QEAEEWYKSK | YADLSDAANR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| NHEALRQAKQ | EMNESRRQIQ | SLTCEVDGLR | GTNEALLRQL | RELEEQFALE | AGGYQAGAAR |
| 370 | 380 | 390 | 400 | 410 | 420 |
| LEEELRQLKE | EMARHLREYQ | ELLNVKMALD | IEIATYRKLL | EGEESRISVP | VHSFASLNIK |
| 430 | 440 | 450 | 460 | ||
| TTVPEVEPPQ | DSHSRKTVLI | KTIETRNGEV | VTESQKEQRS | ELDKSSAHSY |