O75452
Gene name |
RDH16 |
Protein name |
Retinol dehydrogenase 16 |
Names |
Human epidermal retinol dehydrogenase, hRDH-E, Microsomal NAD(+)-dependent retinol dehydrogenase 4, RoDH-4, Short chain dehydrogenase/reductase family 9C member 8, Sterol/retinol dehydrogenase |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:8608 |
EC number |
1.1.1.53: With NAD(+) or NADP(+) as acceptor |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for O75452
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-O75452-F1 | Predicted | AlphaFoldDB |
308 variants for O75452
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA237724645 rs967984690 |
2 | W>C | No |
ClinGen TOPMed |
|
|
rs767885626 COSM941829 CA6638581 |
2 | W>R | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1378605938 CA385399203 |
5 | L>Q | No |
ClinGen TOPMed |
|
|
rs201598560 CA6638580 |
6 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1592433666 CA385399168 |
7 | V>G | No |
ClinGen Ensembl |
|
|
CA385399164 rs1312890793 |
8 | F>L | No |
ClinGen gnomAD |
|
|
rs1322445503 CA385399137 |
9 | V>A | No |
ClinGen gnomAD |
|
|
rs773191923 CA6638577 |
9 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs773191923 CA6638576 |
9 | V>M | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 10 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1446020240 CA385399095 |
12 | Y>C | No |
ClinGen gnomAD |
|
|
rs549296240 CA237724622 |
13 | Y>C | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs200225418 CA385399069 |
14 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA385399060 rs1447278338 |
14 | L>P | No |
ClinGen gnomAD |
|
|
rs200225418 CA6638574 |
14 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA385399052 rs1389541387 |
15 | L>M | No |
ClinGen gnomAD |
|
|
rs528031298 CA6638573 |
16 | H>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA385399041 rs1161140654 |
16 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA385399012 rs1386158787 |
17 | W>C | No |
ClinGen TOPMed |
|
|
rs1301676636 CA385398993 |
18 | Y>* | No |
ClinGen TOPMed |
|
|
CA6638571 rs199814447 |
19 | R>Q | Variant assessed as Somatic; 4.621e-05 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs373912778 CA6638572 |
19 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 20 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs369508470 CA237724604 |
20 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA385398975 rs1256468873 |
20 | E>Q | No |
ClinGen TOPMed |
|
|
CA6638565 rs753136854 |
23 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs377361228 CA6638566 |
23 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638567 rs377361228 |
23 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638564 rs767973636 |
24 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1488840258 CA385398902 |
25 | S>C | No |
ClinGen gnomAD |
|
|
rs372821581 CA6638563 |
25 | S>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs751805506 CA6638562 |
25 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA6638561 rs766431340 |
26 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1191055150 CA385398861 |
28 | R>G | No |
ClinGen TOPMed |
|
| TCGA novel | 28 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773231549 CA6638559 |
28 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs376548420 CA6638558 CA385398819 |
30 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1422382481 CA385398822 |
30 | K>R | No |
ClinGen TOPMed |
|
|
rs761712647 CA6638557 |
31 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA6638556 rs776448532 |
35 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA6638555 rs201949802 |
35 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA385398740 rs1372049147 |
37 | C>R | No |
ClinGen gnomAD |
|
|
rs981109734 CA237724488 |
39 | S>C | No |
ClinGen Ensembl |
|
|
rs771558044 CA6638552 |
40 | G>V | No |
ClinGen ExAC gnomAD |
|
|
COSM4152899 CA6638550 rs778519223 |
42 | G>R | kidney [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
| TCGA novel | 43 | K>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1433945634 CA385398596 |
45 | L>P | No |
ClinGen gnomAD |
|
|
CA6638546 rs755360375 |
47 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs796932430 CA385398560 |
48 | Q>E | No |
ClinGen gnomAD |
|
|
rs796932430 CA237724470 |
48 | Q>K | No |
ClinGen gnomAD |
|
|
rs574033121 CA6638545 |
49 | L>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA385398503 rs1219504518 |
51 | A>E | No |
ClinGen TOPMed |
|
|
rs766651290 CA6638544 |
52 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs1272797536 CA385398491 |
52 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA385398444 rs761804355 |
55 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA6638540 rs761804355 |
55 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs200490309 CA6638541 |
55 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1592433484 CA385398427 |
56 | V>G | No |
ClinGen Ensembl |
|
|
CA6638539 rs201114307 |
56 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6638535 rs760523285 |
60 | C>R | No |
ClinGen ExAC gnomAD |
|
|
rs775108212 CA6638534 |
61 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
rs371699976 CA6638533 |
62 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA6638531 rs199635027 |
65 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA385398283 rs1488388012 |
65 | G>R | No |
ClinGen TOPMed |
|
|
CA6638529 rs748725495 |
67 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs781768839 CA6638528 |
68 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA6638527 rs768982376 |
68 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1276440879 CA385398214 |
68 | Q>R | No |
ClinGen gnomAD |
|
|
rs747418350 CA6638526 |
69 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs1370053053 CA385398190 |
69 | L>P | No |
ClinGen TOPMed |
|
|
rs1297301330 CA385398144 |
71 | G>D | No |
ClinGen TOPMed |
|
|
rs1297301330 CA385398148 |
71 | G>V | No |
ClinGen TOPMed |
|
|
CA237724354 rs61742012 |
73 | T>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs61742012 RCV000957085 CA6638524 COSM358714 |
73 | T>S | lung [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1278201809 CA385398098 |
74 | S>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1278201809 CA385398096 |
74 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
rs201207510 CA6638523 |
75 | D>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6638521 rs141054345 |
76 | R>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs753847694 CA6638520 |
76 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA6638519 rs764123846 |
78 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1396970933 CA385398023 |
78 | E>K | No |
ClinGen gnomAD |
|
|
rs760481504 CA6638518 |
79 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA385397978 rs1285722905 |
80 | V>L | No |
ClinGen TOPMed |
|
|
CA6638517 rs752588011 |
81 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638516 rs767187452 |
83 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1466786593 CA385397921 |
83 | D>V | No |
ClinGen gnomAD |
|
|
CA385397930 rs767187452 |
83 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA385397876 rs1445254634 |
86 | K>N | No |
ClinGen Ensembl |
|
|
rs996707311 CA237724306 |
87 | T>A | No |
ClinGen Ensembl |
|
|
CA385397864 rs1162684954 |
87 | T>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1482727880 CA385397837 |
88 | E>D | No |
ClinGen TOPMed |
|
|
rs1471877461 CA385397830 |
89 | S>G | No |
ClinGen gnomAD |
|
|
rs759331740 CA6638515 |
89 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 89 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs199511187 CA6638513 |
90 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA385397806 rs199511187 |
90 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200026161 CA6638512 |
92 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA237724231 rs202131585 |
94 | A>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA385397719 rs202131585 |
94 | A>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6638510 rs202131585 |
94 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA385397681 rs1357583244 |
95 | Q>H | No |
ClinGen TOPMed |
|
|
CA6638509 rs747439335 |
95 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA385397662 rs1227216028 |
96 | W>* | No |
ClinGen gnomAD |
|
|
rs772411066 CA6638508 |
97 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs772411066 CA6638507 |
97 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA6638506 rs746171553 |
98 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs779110641 CA6638504 |
99 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1592433320 CA385396929 |
100 | C>G | No |
ClinGen Ensembl |
|
|
rs200954284 CA237724153 |
100 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA6638501 rs200134176 |
101 | V>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6638503 rs201943662 |
101 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6638502 rs201943662 |
101 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1163921784 CA385396871 |
103 | D>G | No |
ClinGen gnomAD |
|
|
CA385396879 rs756118236 |
103 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638500 rs756118236 |
103 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638480 rs377240828 |
106 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs751444569 CA6638479 |
108 | G>S | No |
ClinGen ExAC |
|
|
CA385396617 rs766241981 |
109 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs922947877 CA237722590 |
110 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1318064655 CA385396559 |
112 | N>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA385396536 rs1278280524 |
113 | A>P | No |
ClinGen gnomAD |
|
|
rs373743478 CA6638476 |
114 | G>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638477 rs373743478 |
114 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs974365532 CA237722579 |
115 | I>F | No |
ClinGen gnomAD |
|
|
rs1399472757 CA385396457 |
116 | S>T | No |
ClinGen gnomAD |
|
|
rs761232991 CA6638475 |
119 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761232991 CA6638474 |
119 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747640607 CA237722527 |
120 | A>T | No |
ClinGen Ensembl |
|
|
rs1565618748 CA385395903 |
121 | P>T | No |
ClinGen Ensembl |
|
|
CA6638472 rs186803713 |
122 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1381239449 CA385395851 |
124 | L>F | No |
ClinGen TOPMed |
|
|
CA385395862 rs1175025362 |
124 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
rs199665669 CA237722512 |
125 | L>V | No |
ClinGen 1000Genomes |
|
|
CA385395775 rs1323113296 |
130 | F>V | No |
ClinGen TOPMed |
|
|
CA385395760 rs141418155 |
131 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6638467 rs141418155 |
131 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1592432411 CA385395733 |
133 | I>T | No |
ClinGen Ensembl |
|
|
rs773308590 CA6638466 |
135 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 136 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6638464 rs374555767 COSM1263964 |
136 | V>M | Variant assessed as Somatic; 0.0 impact. oesophagus [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs200375298 CA6638460 |
140 | G>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs746932996 CA6638461 |
140 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750176985 CA6638458 |
141 | V>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750176985 CA385395594 |
141 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758134985 CA385395598 |
141 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758134985 CA6638459 |
141 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1382866005 CA385395569 |
142 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA6638457 rs764820930 |
144 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1445541709 CA385395491 |
145 | T>I | No |
ClinGen gnomAD |
|
|
CA385395391 rs1210806383 |
150 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA385395399 rs1210806383 |
150 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
CA6638453 rs372580365 |
153 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1317158999 CA385395307 |
153 | R>K | No |
ClinGen TOPMed |
|
|
rs1242890638 CA385395282 |
154 | R>K | No |
ClinGen gnomAD |
|
|
rs760091836 CA6638451 |
155 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs374572590 CA237722426 |
155 | A>S | No |
ClinGen Ensembl |
|
|
CA385395241 rs760091836 |
155 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA385395211 rs1229648876 |
157 | G>S | No |
ClinGen TOPMed |
|
|
CA385395196 rs1260744006 |
158 | R>C | No |
ClinGen TOPMed |
|
|
rs200197274 CA6638449 |
158 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs200197274 CA6638450 |
158 | R>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA385395187 rs1244736111 |
159 | V>M | No |
ClinGen TOPMed |
|
|
rs763238197 CA6638448 |
160 | V>A | No |
ClinGen ExAC |
|
|
CA385395155 rs773573030 |
161 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA385395149 rs769936511 |
162 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638446 rs769936511 |
162 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA385395128 rs534703097 |
163 | S>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA385395126 rs534703097 |
163 | S>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs534703097 CA6638445 |
163 | S>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1592432320 CA385395084 |
165 | V>A | No |
ClinGen Ensembl |
|
|
CA385395051 rs1456570631 |
167 | G>R | No |
ClinGen gnomAD |
|
|
rs201496901 CA6638443 |
168 | R>Q | Variant assessed as Somatic; 0.0001855 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs539187159 CA6638444 |
168 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA385395017 rs200178029 |
169 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638441 rs200178029 |
169 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs201546365 CA6638440 |
170 | S>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs375015081 CA237722359 |
170 | S>P | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA6638439 rs530887405 |
171 | L>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA6638438 rs778739319 |
172 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1592432282 CA385394961 |
172 | F>V | No |
ClinGen Ensembl |
|
|
rs756909031 CA237722313 |
173 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756909031 CA6638437 |
173 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs777329739 CA6638435 |
175 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs1446928398 CA385394873 |
177 | C>Y | No |
ClinGen gnomAD |
|
|
rs1160254957 CA385394827 |
179 | S>F | No |
ClinGen gnomAD |
|
|
CA6638433 rs752142823 |
180 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1420189506 CA385394817 |
180 | K>R | No |
ClinGen gnomAD |
|
|
rs1178383236 CA385394797 |
181 | Y>* | No |
ClinGen TOPMed gnomAD |
|
|
CA385394810 rs1411321770 |
181 | Y>H | No |
ClinGen TOPMed |
|
|
CA385394789 rs1456744010 |
182 | G>D | No |
ClinGen gnomAD |
|
| TCGA novel | 183 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs572909088 CA6638431 |
183 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1223909817 CA385394685 |
190 | L>F | No |
ClinGen gnomAD |
|
|
rs1262481724 CA385394493 |
193 | E>D | No |
ClinGen gnomAD |
|
|
rs1480893776 CA385394500 |
193 | E>K | No |
ClinGen gnomAD |
|
|
rs769473817 CA6638399 |
195 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs747773253 CA6638398 |
195 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
RCV000961181 rs3215090 |
198 | G>* | No |
ClinVar dbSNP |
|
|
rs1157671378 COSM941828 CA385394457 |
199 | V>A | endometrium [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
rs552742274 CA6638397 |
199 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1400396480 CA385394440 |
202 | A>P | No |
ClinGen gnomAD |
|
|
CA385394436 rs1388527047 |
202 | A>V | No |
ClinGen TOPMed |
|
|
rs1323820345 CA385394430 |
203 | M>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs746449900 CA6638394 |
203 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA237720716 rs771263690 |
204 | I>T | No |
ClinGen Ensembl |
|
|
rs1395033976 CA385394408 |
206 | P>L | No |
ClinGen TOPMed |
|
|
CA385394411 rs1276976948 |
206 | P>S | No |
ClinGen gnomAD |
|
|
CA6638393 rs779499842 |
207 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1319604750 CA385394404 |
207 | G>V | No |
ClinGen gnomAD |
|
|
rs375368688 CA6638392 |
208 | Y>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 209 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA385394381 rs1356891084 |
210 | K>N | No |
ClinGen TOPMed |
|
|
CA6638391 rs200749701 |
211 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764532243 CA6638390 |
212 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764532243 CA385394374 |
212 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs140658779 CA6638389 |
213 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs752959923 CA6638388 |
217 | E>G | No |
ClinGen ExAC |
|
|
CA6638386 rs139020643 |
218 | R>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA385394319 rs1592431209 |
220 | L>* | No |
ClinGen Ensembl |
|
|
rs1168591077 CA385394312 |
221 | K>E | No |
ClinGen gnomAD |
|
|
CA6638385 rs759673658 |
223 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638384 rs774244547 |
224 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1592431187 CA385394223 |
225 | E>D | No |
ClinGen Ensembl |
|
|
rs1181431526 CA385394230 |
225 | E>G | No |
ClinGen TOPMed |
|
|
rs1193879706 CA385394209 |
226 | I>T | No |
ClinGen gnomAD |
|
|
rs1441788150 CA385394194 |
227 | W>* | No |
ClinGen gnomAD |
|
|
CA6638382 rs762842316 COSM1363194 |
229 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA6638383 rs377404302 |
229 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638381 rs773035320 |
230 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA6638380 rs576974173 |
231 | S>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA6638377 rs745788114 |
233 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1161757136 CA385394068 |
234 | V>A | No |
ClinGen TOPMed |
|
|
rs1244614283 CA385394036 |
236 | E>A | No |
ClinGen gnomAD |
|
|
rs746561570 CA385394020 |
237 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746561570 CA6638376 COSM145854 |
237 | A>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA385394017 rs1339049063 |
237 | A>V | No |
ClinGen gnomAD |
|
|
CA385393979 rs1465853330 |
239 | G>D | No |
ClinGen TOPMed |
|
| TCGA novel | 240 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778349385 CA6638372 |
240 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA6638373 COSM468688 rs368973096 |
240 | E>K | kidney Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA gnomAD |
|
rs377577175 CA6638371 |
242 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs913344919 CA237720616 |
243 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
CA237720620 rs913344919 |
243 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA385393913 rs1472405704 |
244 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA385393911 rs1383333672 |
245 | D>H | No |
ClinGen gnomAD |
|
|
rs1274529590 CA385393803 |
246 | Y>C | No |
ClinGen gnomAD |
|
|
CA385393902 rs1351056904 |
246 | Y>D | No |
ClinGen TOPMed |
|
|
CA385393735 rs1394735518 |
250 | A>T | No |
ClinGen TOPMed |
|
|
rs765193007 CA6638345 |
251 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs761625822 CA6638344 |
252 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs140730069 CA6638343 |
253 | M>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs760443742 CA6638341 |
254 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA6638342 rs763784087 |
254 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs200529763 CA6638340 |
257 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1363193 rs200529763 CA6638339 |
257 | C>Y | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1368708071 CA385393580 |
258 | T>P | No |
ClinGen TOPMed |
|
|
CA385393530 rs1171691440 |
260 | D>V | No |
ClinGen gnomAD |
|
|
CA385393514 rs1479258589 |
261 | L>P | No |
ClinGen gnomAD |
|
|
rs1270327031 CA385393494 |
262 | S>L | No |
ClinGen gnomAD |
|
|
rs368315464 CA237720069 |
263 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1231575586 CA385393436 |
265 | T>I | No |
ClinGen TOPMed |
|
|
CA385393410 rs1218354321 |
267 | C>R | No |
ClinGen gnomAD |
|
|
CA385393369 rs1278170411 |
269 | E>K | No |
ClinGen gnomAD |
|
|
rs1235954497 CA385393341 |
270 | H>R | No |
ClinGen TOPMed |
|
|
rs948802385 CA237720046 |
271 | A>T | No |
ClinGen gnomAD |
|
|
CA6638333 rs61741966 |
271 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1195848414 CA385393255 |
275 | C>F | No |
ClinGen TOPMed |
|
|
rs780280835 CA6638330 |
278 | R>C | No |
ClinGen ExAC TOPMed |
|
|
rs780280835 CA237719995 |
278 | R>G | No |
ClinGen ExAC TOPMed |
|
|
CA6638327 rs931225152 COSM3384522 |
278 | R>H | Variant assessed as Somatic; 0.0 impact. pancreas [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
| TCGA novel | 278 | R>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6638328 rs931225152 |
278 | R>P | No |
ClinGen TOPMed gnomAD |
|
| rs755216247 | 278 | R>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1592430722 CA385393198 |
279 | T>P | No |
ClinGen Ensembl |
|
|
CA6638326 rs758581189 |
280 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM270019 CA6638325 rs745990933 |
280 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 281 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA237719974 rs918497141 |
282 | S>L | No |
ClinGen TOPMed |
|
|
CA385393108 rs1592430703 |
284 | G>A | No |
ClinGen Ensembl |
|
|
rs1359678114 CA385393113 |
284 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs765232213 CA237719965 |
285 | W>* | No |
ClinGen gnomAD |
|
|
rs765232213 CA385393093 |
285 | W>S | No |
ClinGen gnomAD |
|
|
CA6638323 rs757278655 |
286 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA6638322 rs753715280 |
287 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA6638321 rs764026710 |
288 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA385393026 rs1417989547 |
289 | L>I | No |
ClinGen gnomAD |
|
|
CA385392980 rs1385538539 |
291 | Y>* | No |
ClinGen TOPMed |
|
|
CA385392977 rs1188861119 |
292 | L>I | No |
ClinGen gnomAD |
|
|
CA6638319 rs752491046 |
293 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1202206280 CA385392929 |
294 | M>I | No |
ClinGen gnomAD |
|
|
rs1462805997 CA385392914 |
295 | S>I | No |
ClinGen gnomAD |
|
|
CA6638318 rs767307105 |
295 | S>R | No |
ClinGen ExAC |
|
|
CA237719951 rs939289243 |
297 | M>L | No |
ClinGen TOPMed |
|
|
CA6638316 rs774051385 |
300 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA385392827 rs1305893595 |
300 | F>S | No |
ClinGen gnomAD |
|
|
CA385392774 rs1295008778 |
304 | A>T | No |
ClinGen TOPMed |
|
|
CA237719946 rs943669632 |
304 | A>V | No |
ClinGen Ensembl |
|
|
CA237719943 rs912345765 |
306 | M>T | No |
ClinGen gnomAD |
|
|
CA6638315 rs765789629 |
308 | W>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA385392683 rs765789629 |
308 | W>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6638314 rs201304555 |
312 | S>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs370686968 CA6638313 |
312 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6638312 rs368124263 |
313 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1337066665 CA385392566 |
315 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
rs373978070 CA385392561 |
316 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373978070 CA6638309 |
316 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA385392520 rs1429588526 |
318 | L>C | No |
ClinGen gnomAD |
|
|
rs779115746 CA6638307 |
318 | L>R | No |
ClinGen ExAC gnomAD |
No associated diseases with O75452
Functions
| Description | ||
|---|---|---|
| EC Number | 1.1.1.53 | With NAD(+) or NADP(+) as acceptor |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
7 GO annotations of molecular function
| Name | Definition |
|---|---|
| androstan-3-alpha,17-beta-diol dehydrogenase activity | Catalysis of the reaction: NAD+ + androstan-3-alpha,17-beta-diol = 17-beta-hydroxyandrostan-3-one + NADH + H+. |
| androsterone dehydrogenase activity | Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione. |
| electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
| identical protein binding | Binding to an identical protein or proteins. |
| NAD-retinol dehydrogenase activity | Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+. |
| oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
| steroid dehydrogenase activity | Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
| retinol metabolic process | The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A. |
| steroid metabolic process | The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. |
7 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q02337 | BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial | Bos taurus (Bovine) | PR |
| P80365 | HSD11B2 | 11-beta-hydroxysteroid dehydrogenase type 2 | Homo sapiens (Human) | PR |
| Q02338 | BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial | Homo sapiens (Human) | PR |
| Q8NEX9 | SDR9C7 | Short-chain dehydrogenase/reductase family 9C member 7 | Homo sapiens (Human) | PR |
| Q9R092 | Hsd17b6 | 17-beta-hydroxysteroid dehydrogenase type 6 | Mus musculus (Mouse) | PR |
| P50233 | Hsd11b2 | 11-beta-hydroxysteroid dehydrogenase type 2 | Rattus norvegicus (Rat) | PR |
| O54753 | Hsd17b6 | 17-beta-hydroxysteroid dehydrogenase type 6 | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MWLYLAVFVG | LYYLLHWYRE | RQVLSHLRDK | YVFITGCDSG | FGKLLARQLD | ARGLRVLAAC |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LTEKGAEQLR | GQTSDRLETV | TLDVTKTESV | AAAAQWVKEC | VRDKGLWGLV | NNAGISLPTA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| PNELLTKQDF | VTILDVNLLG | VIDVTLSLLP | LVRRARGRVV | NVSSVMGRVS | LFGGGYCISK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| YGVEAFSDSL | RRELSYFGVK | VAMIEPGYFK | TAVTSKERFL | KSFLEIWDRS | SPEVKEAYGE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| KFVADYKKSA | EQMEQKCTQD | LSLVTNCMEH | ALIACHPRTR | YSAGWDAKLL | YLPMSYMPTF |
| 310 | |||||
| LVDAIMYWVS | PSPAKAL |