Q86SR1
Gene name |
GALNT10 |
Protein name |
Polypeptide N-acetylgalactosaminyltransferase 10 |
Names |
Polypeptide GalNAc transferase 10, GalNAc-T10, pp-GaNTase 10, Protein-UDP acetylgalactosaminyltransferase 10, UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:55568 |
EC number |
2.4.1.41: Hexosyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for Q86SR1
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2D7I | X-ray | 250 A | A | 40-603 | PDB |
| 2D7R | X-ray | 280 A | A | 40-603 | PDB |
| AF-Q86SR1-F1 | Predicted | AlphaFoldDB |
468 variants for Q86SR1
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1180666667 CA362003962 |
4 | K>N | No |
ClinGen TOPMed |
|
|
CA362003966 rs1296682318 |
5 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
CA362003970 rs1264426885 |
5 | E>D | No |
ClinGen TOPMed |
|
|
CA362003964 rs1296682318 |
5 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1218339723 CA362003986 |
8 | L>F | No |
ClinGen TOPMed |
|
|
CA362003996 rs1236055836 |
10 | Q>* | No |
ClinGen TOPMed gnomAD |
|
|
CA362003998 rs1236055836 |
10 | Q>K | No |
ClinGen TOPMed gnomAD |
|
|
CA362004004 rs1244919944 |
11 | A>T | No |
ClinGen TOPMed |
|
|
CA362004032 rs1264454912 |
15 | V>G | No |
ClinGen gnomAD |
|
|
rs1205250896 CA362004027 |
15 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1320098287 CA362004034 |
16 | L>V | No |
ClinGen gnomAD |
|
|
CA362004045 rs1192917283 |
18 | A>T | No |
ClinGen gnomAD |
|
|
CA362004074 rs1172042784 |
23 | P>S | No |
ClinGen gnomAD |
|
|
CA362004079 rs1394748135 |
24 | N>D | No |
ClinGen gnomAD |
|
|
CA362004085 rs1216811572 |
24 | N>K | No |
ClinGen gnomAD |
|
|
CA362004082 rs1454353725 |
24 | N>S | No |
ClinGen gnomAD |
|
|
CA362004086 rs1290766945 |
25 | V>M | No |
ClinGen gnomAD |
|
|
rs541523345 CA3525728 |
26 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA362004093 rs1383102450 |
26 | G>R | No |
ClinGen TOPMed |
|
|
CA362004105 rs1250712577 |
28 | W>R | No |
ClinGen gnomAD |
|
|
rs1319572643 CA362004112 |
29 | A>T | No |
ClinGen gnomAD |
|
|
rs1371482562 CA362004117 |
29 | A>V | No |
ClinGen gnomAD |
|
|
CA362004131 rs1235996066 |
32 | R>S | No |
ClinGen gnomAD |
|
|
CA362004139 rs1458447134 |
33 | E>A | No |
ClinGen TOPMed |
|
|
rs377183023 CA130393504 |
33 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA gnomAD |
|
CA3525729 rs553318217 |
34 | R>W | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs929000327 CA130393505 |
36 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1349080032 CA362004168 |
37 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1208665035 CA362004172 |
38 | G>D | No |
ClinGen gnomAD |
|
|
rs777582011 CA3525730 |
40 | P>A | No |
ClinGen ExAC |
|
|
CA3525731 rs748909453 |
40 | P>H | No |
ClinGen ExAC gnomAD |
|
|
rs750282728 CA130393506 |
42 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA3525732 rs770677796 |
44 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA362004210 rs1252595960 |
45 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
CA362004211 rs1252595960 |
45 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1252595960 CA362004212 |
45 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA362004215 rs1161292748 |
46 | A>T | No |
ClinGen gnomAD |
|
|
CA362004224 rs1561623703 |
47 | V>G | No |
ClinGen Ensembl |
|
|
CA362004228 rs1451472348 |
48 | A>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1362146235 CA362004225 |
48 | A>T | No |
ClinGen gnomAD |
|
|
rs1158369720 CA362004242 |
50 | A>V | No |
ClinGen gnomAD |
|
|
CA362004248 rs1232535027 |
51 | A>V | No |
ClinGen TOPMed |
|
|
CA362004253 rs774055519 |
52 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA3525734 rs774055519 |
52 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA130393508 rs984202808 |
53 | Q>E | No |
ClinGen gnomAD |
|
|
rs1408674074 CA362004656 |
54 | G>S | No |
ClinGen gnomAD |
|
|
rs1293443641 CA362004667 |
55 | S>L | No |
ClinGen gnomAD |
|
|
CA3525742 rs765419989 |
57 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA362004678 rs1232009146 |
57 | S>N | No |
ClinGen gnomAD |
|
|
rs750524622 CA3525743 |
58 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525744 rs370969922 |
58 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362004685 rs370969922 |
58 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM3429180 CA362004684 COSM3429179 rs370969922 |
58 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA130404450 rs958844634 |
60 | K>N | No |
ClinGen Ensembl |
|
|
rs1207108682 CA362004697 |
60 | K>R | No |
ClinGen gnomAD |
|
|
CA3525745 rs780995129 COSM4155569 COSM4155568 |
62 | T>M | kidney [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
| TCGA novel | 62 | T>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 63 | F>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1407197178 CA362004739 |
66 | G>R | No |
ClinGen TOPMed |
|
| TCGA novel | 67 | D>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA362004763 rs1178855492 |
69 | Q>R | No |
ClinGen TOPMed |
|
|
CA3525749 rs749070888 |
73 | D>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362004799 rs1377158268 |
74 | W>S | No |
ClinGen TOPMed |
|
|
rs770767701 CA3525750 |
75 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
rs142239169 CA3525751 |
80 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA3525752 rs745377742 |
81 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1352394102 CA362004848 |
81 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA362004866 rs1413428054 |
84 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs146720050 CA3525755 COSM294398 |
86 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs200653755 CA3525756 |
86 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3525758 rs140354249 |
87 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1064713 CA362004987 rs1182876835 |
99 | T>I | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA3525782 rs748567978 |
100 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs759683121 CA3525783 |
101 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA362005007 rs939642021 |
102 | E>D | No |
ClinGen gnomAD |
|
|
rs764129503 CA3525784 |
103 | R>T | No |
ClinGen ExAC gnomAD |
|
|
rs1368967086 CA362005033 |
106 | Q>P | No |
ClinGen gnomAD |
|
|
CA362005047 rs1280160046 |
108 | Y>* | No |
ClinGen gnomAD |
|
|
CA3525786 rs757136989 |
108 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
CA3525787 rs765038396 |
109 | R>Q | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 112 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA362005080 rs1331109192 |
113 | F>C | No |
ClinGen Ensembl |
|
|
CA362005076 rs1222175505 |
113 | F>L | No |
ClinGen gnomAD |
|
|
rs750157494 CA3525789 |
115 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs750157494 CA3525788 |
115 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA362005105 rs144259960 |
117 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3525791 rs144259960 |
117 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3525792 rs754420824 |
118 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs781674331 CA362005120 |
119 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1561653918 CA362005116 |
119 | D>N | No |
ClinGen Ensembl |
|
|
rs781674331 CA3525793 |
119 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs1561653928 CA362005160 |
125 | R>C | No |
ClinGen Ensembl |
|
|
CA362005162 rs1470861749 |
125 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1470861749 CA362005163 |
125 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1290322305 CA362005169 |
126 | S>C | No |
ClinGen TOPMed |
|
|
CA130404774 rs890227372 |
127 | L>F | No |
ClinGen TOPMed |
|
|
rs1179453803 CA362005180 |
128 | P>R | No |
ClinGen gnomAD |
|
|
CA362005184 rs1454122827 |
129 | D>N | No |
ClinGen gnomAD |
|
|
CA3525796 rs369164195 |
130 | I>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3525795 rs369164195 |
130 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3525798 rs756983564 |
131 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs538296822 CA3525797 |
131 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs973621370 CA130404775 |
132 | H>N | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 137 | S>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1424187728 CA362004312 |
138 | K>E | No |
ClinGen TOPMed |
|
|
COSM1064714 rs150192577 CA3525823 |
139 | R>C | endometrium [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
COSM3661635 rs762822794 COSM269222 CA3525824 |
139 | R>H | Variant assessed as Somatic; 0.0 impact. liver large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1243781940 CA362004326 |
140 | Y>C | No |
ClinGen gnomAD |
|
|
rs1243781940 CA362004325 |
140 | Y>S | No |
ClinGen gnomAD |
|
|
CA3525826 rs191295808 |
142 | E>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3525828 rs767143079 |
145 | P>S | No |
ClinGen ExAC |
|
|
CA3525829 rs376432659 |
149 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362004399 rs1581976384 |
151 | I>T | No |
ClinGen Ensembl |
|
|
rs1461400576 CA362004395 |
151 | I>V | No |
ClinGen TOPMed |
|
|
CA362004429 rs201614245 |
155 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1301016919 CA362004431 |
156 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA3525831 rs778355260 |
158 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA3525832 rs754248171 |
159 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525833 rs757669323 |
161 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA130407941 rs934984053 |
163 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA362004477 rs1395963489 |
163 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA362004479 rs1395963489 |
163 | R>L | No |
ClinGen gnomAD |
|
|
CA3525835 rs746209138 |
164 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362004486 rs780422451 |
165 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525837 COSM1064715 rs780422451 |
165 | V>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA3525838 rs747119934 |
166 | H>P | No |
ClinGen ExAC gnomAD |
|
|
rs1420673753 CA362004514 |
169 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs143021082 CA3525842 |
170 | N>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3525841 rs143021082 |
170 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs111378217 CA3525843 |
171 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs111378217 CA130407943 |
171 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3525844 rs759320997 |
172 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1344858036 CA362004542 |
174 | P>S | No |
ClinGen gnomAD |
|
|
CA362004555 rs775064214 |
176 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760251759 CA3525847 |
177 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760251759 CA3525848 |
177 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757748797 CA362004563 |
178 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757748797 CA362004564 |
178 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1064716 rs757748797 CA3525850 |
178 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA362004568 COSM3612884 COSM3612885 rs1455800951 |
179 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA3525852 rs750888067 |
180 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA362004590 rs1465448209 |
182 | L>Q | No |
ClinGen gnomAD |
|
|
rs922626660 CA130407945 |
183 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA130407946 rs200640486 |
184 | D>N | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 186 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1371188603 CA362004638 |
189 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
CA362004637 rs1371188603 |
189 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs200301599 CA3525856 |
189 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs866441565 CA130412665 |
190 | E>V | No |
ClinGen Ensembl |
|
|
rs1220100969 CA362005236 |
191 | H>Y | No |
ClinGen gnomAD |
|
| TCGA novel | 192 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA130412666 rs370485575 |
196 | L>F | No |
ClinGen ESP TOPMed |
|
|
CA362005291 rs1180691505 |
199 | Y>H | No |
ClinGen gnomAD |
|
|
CA3525922 rs751467853 |
200 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs781081604 CA3525924 |
202 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA362005316 rs1343249287 |
202 | L>R | No |
ClinGen TOPMed |
|
|
CA3525925 rs201987167 |
204 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA130412668 rs755889551 |
205 | S>I | No |
ClinGen ExAC gnomAD |
|
|
rs755889551 CA3525926 |
205 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs777563929 CA3525927 |
206 | V>M | No |
ClinGen ExAC |
|
|
CA362005354 rs1408120667 |
208 | I>M | No |
ClinGen gnomAD |
|
|
COSM126718 CA362005362 rs1306080842 |
210 | R>* | upper_aerodigestive_tract Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA362005363 rs1335161429 |
210 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA362005370 rs1581998954 |
211 | T>S | No |
ClinGen Ensembl |
|
|
CA130412669 COSM1285112 rs760733045 |
214 | R>W | Variant assessed as Somatic; 0.0 impact. autonomic_ganglia [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA3525929 rs770426085 |
216 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1176591241 CA362005431 |
221 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
COSM1435407 rs746426348 CA3525931 |
221 | R>Q | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA3525932 rs772434071 |
224 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA362005453 rs1561675806 |
225 | A>T | No |
ClinGen Ensembl |
|
|
CA362005461 rs1484659162 |
226 | S>A | No |
ClinGen TOPMed |
|
|
rs775888631 CA3525933 |
228 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525934 rs761019467 |
228 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA130412671 rs1005948664 |
231 | D>H | No |
ClinGen Ensembl |
|
|
rs1335092464 CA362005501 |
233 | I>V | No |
ClinGen Ensembl |
|
|
CA362005519 rs1472568295 COSM3827493 COSM3827494 |
235 | F>L | Variant assessed as Somatic; impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs761825866 CA3525937 |
240 | C>S | No |
ClinGen ExAC gnomAD |
|
|
rs1168114626 CA362005565 |
242 | A>T | No |
ClinGen gnomAD |
|
|
CA3525938 rs116636563 |
243 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs750441555 CA3525939 |
245 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1296342224 CA362005588 |
245 | N>S | No |
ClinGen TOPMed |
|
|
rs1216573576 CA362005591 |
246 | W>R | No |
ClinGen TOPMed |
|
|
rs997094257 CA130412673 |
247 | L>R | No |
ClinGen Ensembl |
|
|
CA3525941 rs754994216 |
248 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362005613 rs1297853224 |
249 | P>H | No |
ClinGen TOPMed gnomAD |
|
| rs540440277 | 250 | L>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA130413074 rs368297109 |
252 | D>G | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA3525954 rs776871894 |
253 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA3525955 rs762137832 |
253 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762137832 CA3525956 |
253 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA362005652 rs1268373860 |
254 | I>V | No |
ClinGen gnomAD |
|
|
CA3525957 rs372572304 |
256 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM3941204 CA130413076 COSM3941203 rs1036938665 |
256 | R>W | Variant assessed as Somatic; 0.0 impact. oesophagus [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs540856217 CA3525958 |
257 | N>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3525959 rs767568340 |
258 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525960 rs752631938 |
258 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA362005694 rs1287901142 |
261 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
rs764021056 CA3525962 |
262 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756987983 CA3525964 |
264 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs753553696 CA3525963 |
264 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA362005726 rs1201074220 |
266 | I>V | No |
ClinGen TOPMed |
|
|
rs200328783 CA362005738 |
267 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA362005732 rs1561677044 |
267 | D>N | No |
ClinGen Ensembl |
|
|
CA362005749 rs1327489320 |
269 | I>N | No |
ClinGen gnomAD |
|
|
CA362005751 rs1327489320 |
269 | I>T | No |
ClinGen gnomAD |
|
|
rs1326142127 CA362005765 |
271 | H>R | No |
ClinGen Ensembl |
|
|
CA3525970 rs747477375 |
273 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs780564646 CA3525969 |
273 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs780564646 CA362005778 |
273 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750156119 CA130413078 |
274 | F>* | No |
ClinGen Ensembl |
|
|
CA3525971 rs769124558 |
274 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs781588576 CA362005793 |
275 | R>P | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3525972 rs781588576 |
275 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1182774029 CA362005791 |
275 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA3525976 CA3525975 rs770121388 |
276 | Y>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3525977 rs771092965 |
277 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA130413079 rs868139541 |
277 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA362005814 rs1421118196 |
279 | Q>E | No |
ClinGen TOPMed gnomAD |
|
|
CA3525978 rs377273675 |
282 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA362005857 rs1310370303 |
285 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs760742738 CA3525979 |
285 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs753728855 CA3525981 |
289 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA130413080 rs894990403 |
290 | W>* | No |
ClinGen TOPMed |
|
|
rs1323676503 CA362005907 |
292 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA362005901 rs1313896255 |
292 | M>L | No |
ClinGen gnomAD |
|
|
rs761445838 CA3525982 |
293 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA362005921 rs1479217607 |
294 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA130413082 rs2351476 |
295 | K>* | No |
ClinGen Ensembl |
|
|
CA362005931 rs1198650111 |
295 | K>N | No |
ClinGen TOPMed |
|
|
rs1267713448 CA362005928 |
295 | K>R | No |
ClinGen TOPMed |
|
|
rs764954032 CA362005934 |
296 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525983 rs764954032 |
296 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA130413083 rs2161344 |
296 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA3525984 rs749998278 |
297 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA362005946 rs1194548910 |
298 | P>L | No |
ClinGen TOPMed |
|
|
rs1253878344 CA362005941 |
298 | P>T | No |
ClinGen gnomAD |
|
|
CA362005959 rs1263772085 |
300 | P>L | No |
ClinGen TOPMed |
|
|
rs368896641 CA3525985 |
303 | L>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed |
|
|
CA362005979 rs1256624195 |
304 | Q>E | No |
ClinGen gnomAD |
|
|
CA3525986 rs779584554 |
306 | A>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 306 | A>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs751050579 CA3525987 |
308 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1429813684 CA362006010 |
308 | P>L | No |
ClinGen gnomAD |
|
|
CA362006011 rs1429813684 |
308 | P>R | No |
ClinGen gnomAD |
|
|
CA362006008 rs751050579 |
308 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200736059 CA3525989 |
310 | D>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3525990 rs748552291 |
312 | F>I | No |
ClinGen ExAC |
|
|
CA3526009 rs768084638 |
313 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3525991 rs769997712 |
313 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs921043684 CA130033160 |
314 | S>T | No |
ClinGen TOPMed |
|
|
rs952352426 CA130033168 |
316 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 318 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1485251045 CA361901001 |
319 | G>D | No |
ClinGen gnomAD |
|
|
rs1225296139 CA361900993 |
319 | G>S | No |
ClinGen TOPMed |
|
|
rs1191337886 CA361901040 |
322 | F>L | No |
ClinGen gnomAD |
|
|
CA3526015 rs139262954 |
323 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361901061 rs1176103102 |
323 | A>V | No |
ClinGen gnomAD |
|
|
CA3526016 rs775372012 |
324 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771993302 CA3526017 |
325 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA3526020 rs377526323 |
326 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3526021 rs377526323 |
326 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs776665628 CA3526018 |
326 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA361901118 rs762733735 |
327 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA3526022 rs762733735 |
327 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs370165932 CA130033237 |
327 | K>R | No |
ClinGen ESP TOPMed |
|
|
rs144099170 CA3526025 |
333 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs773937139 CA3526024 |
333 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526027 rs752228142 |
334 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs374511506 CA3526026 |
334 | G>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs756637698 CA3526028 |
335 | Y>D | No |
ClinGen ExAC gnomAD |
|
|
CA130033260 rs556767050 |
337 | P>S | No |
ClinGen 1000Genomes gnomAD |
|
|
CA3526030 rs376469597 |
338 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1253231050 CA361901442 |
340 | E>A | No |
ClinGen gnomAD |
|
|
CA3526032 rs779298067 |
340 | E>D | No |
ClinGen ExAC |
|
|
CA361901477 rs1582003906 |
341 | I>T | No |
ClinGen Ensembl |
|
|
CA361901519 rs1473769585 |
342 | W>C | No |
ClinGen gnomAD |
|
|
rs746044673 CA3526033 |
344 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs1039768826 CA130033319 |
345 | E>G | No |
ClinGen Ensembl |
|
|
rs1561678644 CA361901589 |
346 | Q>* | No |
ClinGen Ensembl |
|
|
CA361901617 rs1303609758 |
347 | Y>C | No |
ClinGen TOPMed |
|
|
CA361901605 rs1406189695 |
347 | Y>D | No |
ClinGen gnomAD |
|
|
CA361901602 rs1406189695 |
347 | Y>N | No |
ClinGen gnomAD |
|
|
CA3526035 rs202216584 |
350 | S>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA361901693 rs1292113808 |
350 | S>F | No |
ClinGen TOPMed |
|
|
rs148741733 CA3526036 |
351 | F>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA361901755 rs1351101222 |
352 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA3526074 rs201377561 |
353 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| rs1320790513 | 358 | G>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361904084 rs1379955753 |
358 | G>D | No |
ClinGen gnomAD |
|
|
CA3526077 rs142364912 |
359 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs745659437 CA3526078 |
359 | R>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 360 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771848465 CA3526079 |
364 | P>A | No |
ClinGen ExAC |
|
|
rs371395496 CA3526080 |
364 | P>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA361904143 rs1323250970 |
367 | R>T | No |
ClinGen gnomAD |
|
|
CA3526082 rs768403210 |
369 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs776342363 CA3526084 |
371 | I>M | No |
ClinGen ExAC gnomAD |
|
|
CA361904194 rs1280234355 |
374 | K>N | No |
ClinGen Ensembl |
|
|
rs761407846 CA3526085 |
374 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361904207 rs1452072700 |
376 | V>A | No |
ClinGen gnomAD |
|
|
rs1266753095 CA361904227 |
378 | Y>C | No |
ClinGen gnomAD |
|
|
CA361904261 rs1561684621 |
379 | K>N | No |
ClinGen Ensembl |
|
|
rs773711751 CA3526087 |
381 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs773711751 CA361904286 |
381 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1451203322 CA361904292 |
382 | A>T | No |
ClinGen gnomAD |
|
|
CA3526090 rs540121328 |
383 | G>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1406293735 CA361904323 |
384 | V>I | No |
ClinGen gnomAD |
|
|
rs912590775 CA130047868 |
385 | S>G | No |
ClinGen TOPMed |
|
|
rs752778520 CA3526093 |
385 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA361904410 rs1309622151 |
388 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs756129164 CA3526094 |
388 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526130 rs776840464 |
392 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs768745296 CA3526129 |
392 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs761735906 CA3526131 |
393 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA130051915 rs968419437 |
395 | E>D | No |
ClinGen Ensembl |
|
| TCGA novel | 395 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs751497664 CA3526133 COSM3827498 |
395 | E>K | Variant assessed as Somatic; 4.62e-05 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs199954427 CA3526134 |
397 | W>* | No |
ClinGen 1000Genomes ExAC TOPMed |
|
|
CA3526135 rs140453579 |
398 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs752519701 CA3526136 |
399 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA361906728 rs1166579379 |
401 | Y>D | No |
ClinGen gnomAD |
|
|
CA361906726 rs1166579379 |
401 | Y>H | No |
ClinGen gnomAD |
|
|
rs202225318 CA130051942 |
402 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs202225318 CA3526138 |
402 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772113975 CA130051953 |
403 | E>D | No |
ClinGen Ensembl |
|
|
rs753401443 CA3526139 |
404 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs756672155 CA3526140 |
405 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361906829 rs1359719352 |
406 | Y>D | No |
ClinGen gnomAD |
|
|
CA361906879 rs1315029260 |
408 | R>C | No |
ClinGen gnomAD |
|
|
CA3526141 rs147103681 |
408 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs764097403 CA361906897 |
409 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526143 rs764097403 |
409 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs202239148 CA3526142 |
409 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs267600504 CA130051974 |
411 | E>K | No |
ClinGen gnomAD |
|
|
CA361906957 rs1262120665 |
412 | Y>F | No |
ClinGen gnomAD |
|
|
rs780452300 CA3526144 |
413 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361906979 rs1217244433 |
413 | R>H | No |
ClinGen gnomAD |
|
|
rs747372600 CA3526145 |
414 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1200754006 CA361907011 |
415 | L>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1353126432 CA361907028 |
416 | S>P | No |
ClinGen TOPMed |
|
|
CA130051994 rs375000619 |
417 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA TOPMed gnomAD |
|
rs369435277 CA3526148 COSM1207841 |
421 | A>T | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3526149 rs769721586 |
422 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs759599396 CA3526151 |
427 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361907201 rs1561686498 COSM327580 |
427 | R>H | large_intestine Variant assessed as Somatic; impact. haematopoietic_and_lymphoid_tissue [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA3526152 rs767552067 |
429 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs751593382 CA3526154 |
430 | L>I | No |
ClinGen ExAC gnomAD |
|
|
rs139635794 CA3526155 |
433 | K>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 437 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA361907405 rs1382411297 |
438 | F>Y | No |
ClinGen TOPMed |
|
|
rs147745456 CA361907437 |
440 | T>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs147745456 COSM1435409 CA3526156 |
440 | T>M | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA3526157 rs147745456 |
440 | T>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs758969315 CA3526160 |
444 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1222670857 CA361907508 |
444 | W>C | No |
ClinGen gnomAD |
|
|
rs758969315 CA361907504 |
444 | W>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1294502034 CA361907518 |
445 | D>N | No |
ClinGen gnomAD |
|
|
rs1199089845 CA361907558 |
447 | P>R | No |
ClinGen gnomAD |
|
|
CA361907553 rs1582018725 |
447 | P>S | No |
ClinGen Ensembl |
|
|
CA3526162 rs747389070 |
448 | K>R | No |
ClinGen ExAC TOPMed |
|
|
rs768855508 CA3526164 |
452 | P>S | No |
ClinGen ExAC |
|
|
rs117925322 CA3526166 |
453 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3526168 rs773486061 |
455 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526170 rs200478812 |
456 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3526169 rs200478812 |
456 | P>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA361907686 rs754234880 |
460 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM4159667 rs754234880 CA3526175 CA3526174 |
460 | W>C | thyroid [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA361907683 rs1322850349 |
460 | W>L | No |
ClinGen gnomAD |
|
|
rs373237804 CA3526176 |
461 | G>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA361907697 rs749942538 |
462 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs777013321 | 462 | E>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3526177 rs764863010 |
462 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753010738 CA3526202 |
463 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1300954685 CA361908595 |
464 | R>* | No |
ClinGen gnomAD |
|
|
CA3526204 rs142635658 |
464 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs142635658 RCV000895997 CA3526203 |
464 | R>Q | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1476379508 CA361908608 |
466 | V>A | No |
ClinGen gnomAD |
|
|
rs200600903 CA361908605 |
466 | V>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs200600903 CA3526205 |
466 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs778917084 CA3526207 |
468 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745955681 CA3526208 |
468 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526211 rs747919127 |
469 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs370371473 CA3526209 CA3526210 |
469 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3526212 rs143091614 |
474 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs577854465 CA3526214 |
477 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs373562892 CA361908676 |
478 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373562892 CA3526215 |
478 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1324647293 CA361908691 |
480 | G>D | No |
ClinGen gnomAD |
|
|
rs201408248 CA3526216 |
481 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361908704 rs1192405787 |
482 | P>L | No |
ClinGen TOPMed |
|
|
CA3526218 rs767929676 |
485 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs917161082 CA130054685 |
486 | E>G | No |
ClinGen TOPMed |
|
|
rs1205768103 COSM1064723 CA361908741 |
487 | G>D | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA3526220 rs761229479 |
489 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs146258951 CA130054711 |
489 | V>I | No |
ClinGen 1000Genomes ESP TOPMed gnomAD |
|
|
CA3526221 rs764597753 |
490 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA3526222 rs754240894 |
490 | R>Q | Variant assessed as Somatic; 4.707e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3526223 rs757619293 |
492 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs779123658 CA3526224 |
492 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs909875125 CA361908857 |
495 | A>P | No |
ClinGen gnomAD |
|
|
rs909875125 CA130054764 |
495 | A>T | No |
ClinGen gnomAD |
|
|
rs1398468613 CA361908893 |
497 | W>* | No |
ClinGen gnomAD |
|
|
CA3526246 rs1263911922 CA361909530 |
507 | W>C | No |
ClinGen TOPMed |
|
| TCGA novel | 508 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM3674369 CA361909553 rs1252215886 |
509 | E>D | Variant assessed as Somatic; 0.0 impact. prostate [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs1369983616 CA361909546 |
509 | E>K | No |
ClinGen gnomAD |
|
| TCGA novel | 510 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs777623511 CA3526249 |
512 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
| TCGA novel | 517 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1308727698 CA361909643 |
519 | T>N | No |
ClinGen gnomAD |
|
|
rs1323478085 CA361909658 |
521 | K>R | No |
ClinGen TOPMed |
|
|
rs1314725134 CA361909664 |
522 | F>V | No |
ClinGen gnomAD |
|
|
rs778538784 CA3526252 |
525 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs745580007 CA3526253 |
526 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1582022733 CA361909719 |
528 | S>P | No |
ClinGen Ensembl |
|
|
CA361909744 rs1582022735 |
530 | T>P | No |
ClinGen Ensembl |
|
|
rs771607017 CA3526254 |
530 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs775206773 CA361909770 |
532 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526255 rs775206773 |
532 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1232557436 CA361909765 |
532 | P>S | No |
ClinGen TOPMed |
|
|
CA3526257 rs35810347 |
534 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM449164 rs200092315 CA3526260 |
537 | D>N | breast [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs551289075 CA130057018 |
540 | S>G | No |
ClinGen 1000Genomes |
|
|
rs766509677 CA3526263 |
543 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1252896374 CA361909929 |
545 | Q>P | No |
ClinGen gnomAD |
|
|
CA3526264 rs751647664 |
546 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1462213616 CA361909992 |
550 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA361909991 rs1462213616 |
550 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs145995359 CA3526267 |
550 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs145995359 CA3526266 |
550 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3526268 rs145995359 |
550 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3526291 rs750246554 |
552 | D>G | No |
ClinGen ExAC gnomAD |
|
|
CA361910492 rs1418659566 |
553 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
CA361910523 rs1582023563 |
556 | Y>S | No |
ClinGen Ensembl |
|
|
CA361910537 rs1582023570 |
557 | H>P | No |
ClinGen Ensembl |
|
|
CA361910533 rs1162720679 |
557 | H>Y | No |
ClinGen gnomAD |
|
|
rs751299218 CA3526294 CA3526295 |
560 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1346970084 CA361910592 |
562 | S>R | No |
ClinGen gnomAD |
|
|
rs780906906 CA3526296 |
568 | E>K | No |
ClinGen ExAC |
|
|
CA361910682 rs1582023595 |
569 | S>R | No |
ClinGen Ensembl |
|
|
CA361910683 rs1217071200 |
570 | D>N | No |
ClinGen gnomAD |
|
|
CA361910697 rs1561689140 |
571 | H>D | No |
ClinGen Ensembl |
|
|
rs1300189829 CA361910702 |
571 | H>R | No |
ClinGen gnomAD |
|
| TCGA novel | 572 | R>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1316923780 CA361910725 |
573 | I>V | No |
ClinGen gnomAD |
|
|
rs1217401447 CA361910737 |
574 | F>L | No |
ClinGen gnomAD |
|
|
rs1354132887 CA361910758 |
575 | M>R | No |
ClinGen TOPMed |
|
|
rs1176991986 CA361910784 |
577 | T>I | No |
ClinGen TOPMed |
|
|
rs1582023617 CA361910781 |
577 | T>P | No |
ClinGen Ensembl |
|
|
rs139580325 CA3526297 |
579 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1223648047 CA361910831 |
581 | S>F | No |
ClinGen gnomAD |
|
|
CA361910838 rs1299641478 |
582 | S>F | No |
ClinGen gnomAD |
|
|
CA3526299 rs778088904 |
582 | S>P | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 584 | T>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3526301 rs749688970 |
586 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3526300 rs749688970 |
586 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA361910886 rs1370795976 |
587 | W>* | No |
ClinGen gnomAD |
|
|
CA3526305 rs772272939 |
589 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs772272939 CA3526304 |
589 | F>V | No |
ClinGen ExAC gnomAD |
|
|
CA3526307 rs765242816 |
592 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs535948214 CA130057988 |
592 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs535948214 CA3526308 |
592 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs927871875 CA130058009 |
594 | S>A | No |
ClinGen TOPMed |
|
|
CA361910989 rs1434038255 |
595 | T>I | No |
ClinGen gnomAD |
|
|
rs1373682897 CA361911040 |
599 | K>N | No |
ClinGen gnomAD |
|
|
rs751387119 CA3526311 |
600 | F>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs754745418 CA3526312 |
601 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA361911086 rs1561689221 |
603 | N>S | No |
ClinGen Ensembl |
No associated diseases with Q86SR1
Functions
| Description | ||
|---|---|---|
| EC Number | 2.4.1.41 | Hexosyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| carbohydrate binding | Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
| metal ion binding | Binding to a metal ion. |
| polypeptide N-acetylgalactosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. This reaction is the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| O-glycan processing | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form a core O-glycan structure. |
| protein O-linked glycosylation | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. |
27 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q07537 | GALNT1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Bos taurus (Bovine) | PR |
| Q6WV17 | Pgant5 | Polypeptide N-acetylgalactosaminyltransferase 5 | Drosophila melanogaster (Fruit fly) | PR |
| Q9Y117 | Pgant3 | Polypeptide N-acetylgalactosaminyltransferase 3 | Drosophila melanogaster (Fruit fly) | PR |
| Q6WV16 | Pgant6 | N-acetylgalactosaminyltransferase 6 | Drosophila melanogaster (Fruit fly) | PR |
| Q86SF2 | GALNT7 | N-acetylgalactosaminyltransferase 7 | Homo sapiens (Human) | PR |
| Q49A17 | GALNTL6 | Polypeptide N-acetylgalactosaminyltransferase-like 6 | Homo sapiens (Human) | PR |
| Q8IUC8 | GALNT13 | Polypeptide N-acetylgalactosaminyltransferase 13 | Homo sapiens (Human) | PR |
| Q96FL9 | GALNT14 | Polypeptide N-acetylgalactosaminyltransferase 14 | Homo sapiens (Human) | PR |
| Q10471 | GALNT2 | Polypeptide N-acetylgalactosaminyltransferase 2 | Homo sapiens (Human) | PR |
| Q8IXK2 | GALNT12 | Polypeptide N-acetylgalactosaminyltransferase 12 | Homo sapiens (Human) | PR |
| Q14435 | GALNT3 | Polypeptide N-acetylgalactosaminyltransferase 3 | Homo sapiens (Human) | PR |
| Q9NY28 | GALNT8 | Probable polypeptide N-acetylgalactosaminyltransferase 8 | Homo sapiens (Human) | PR |
| Q7Z7M9 | GALNT5 | Polypeptide N-acetylgalactosaminyltransferase 5 | Homo sapiens (Human) | PR |
| Q10472 | GALNT1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Homo sapiens (Human) | PR |
| O08912 | Galnt1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Mus musculus (Mouse) | PR |
| P70419 | Galnt3 | Polypeptide N-acetylgalactosaminyltransferase 3 | Mus musculus (Mouse) | PR |
| Q921L8 | Galnt11 | Polypeptide N-acetylgalactosaminyltransferase 11 | Mus musculus (Mouse) | PR |
| Q8BGT9 | Galnt12 | Polypeptide N-acetylgalactosaminyltransferase 12 | Mus musculus (Mouse) | PR |
| Q8CF93 | Galnt13 | Polypeptide N-acetylgalactosaminyltransferase 13 | Mus musculus (Mouse) | PR |
| Q29121 | GALNT1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Sus scrofa (Pig) | PR |
| O88422 | Galnt5 | Polypeptide N-acetylgalactosaminyltransferase 5 | Rattus norvegicus (Rat) | PR |
| Q10473 | Galnt1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Rattus norvegicus (Rat) | PR |
| Q6UE39 | Galnt13 | Polypeptide N-acetylgalactosaminyltransferase 13 | Rattus norvegicus (Rat) | PR |
| Q925R7 | Galnt10 | Polypeptide N-acetylgalactosaminyltransferase 10 | Rattus norvegicus (Rat) | PR |
| Q7K755 | gly-11 | Putative polypeptide N-acetylgalactosaminyltransferase 11 | Caenorhabditis elegans | PR |
| P34678 | gly-3 | Polypeptide N-acetylgalactosaminyltransferase 3 | Caenorhabditis elegans | PR |
| O61397 | gly-7 | Probable N-acetylgalactosaminyltransferase 7 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MRRKEKRLLQ | AVALVLAALV | LLPNVGLWAL | YRERQPDGTP | GGSGAAVAPA | AGQGSHSRQK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KTFFLGDGQK | LKDWHDKEAI | RRDAQRVGNG | EQGRPYPMTD | AERVDQAYRE | NGFNIYVSDK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| ISLNRSLPDI | RHPNCNSKRY | LETLPNTSII | IPFHNEGWSS | LLRTVHSVLN | RSPPELVAEI |
| 190 | 200 | 210 | 220 | 230 | 240 |
| VLVDDFSDRE | HLKKPLEDYM | ALFPSVRILR | TKKREGLIRT | RMLGASVATG | DVITFLDSHC |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EANVNWLPPL | LDRIARNRKT | IVCPMIDVID | HDDFRYETQA | GDAMRGAFDW | EMYYKRIPIP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PELQKADPSD | PFESPVMAGG | LFAVDRKWFW | ELGGYDPGLE | IWGGEQYEIS | FKVWMCGGRM |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EDIPCSRVGH | IYRKYVPYKV | PAGVSLARNL | KRVAEVWMDE | YAEYIYQRRP | EYRHLSAGDV |
| 430 | 440 | 450 | 460 | 470 | 480 |
| AVQKKLRSSL | NCKSFKWFMT | KIAWDLPKFY | PPVEPPAAAW | GEIRNVGTGL | CADTKHGALG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| SPLRLEGCVR | GRGEAAWNNM | QVFTFTWRED | IRPGDPQHTK | KFCFDAISHT | SPVTLYDCHS |
| 550 | 560 | 570 | 580 | 590 | 600 |
| MKGNQLWKYR | KDKTLYHPVS | GSCMDCSESD | HRIFMNTCNP | SSLTQQWLFE | HTNSTVLEKF |
| NRN |