Q10471
Gene name |
GALNT2 |
Protein name |
Polypeptide N-acetylgalactosaminyltransferase 2 |
Names |
Polypeptide GalNAc transferase 2, GalNAc-T2, pp-GaNTase 2, Protein-UDP acetylgalactosaminyltransferase 2, UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:2590 |
EC number |
2.4.1.41: Hexosyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
14 structures for Q10471
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2FFU | X-ray | 164 A | A | 75-571 | PDB |
| 2FFV | X-ray | 275 A | A/B | 75-571 | PDB |
| 4D0T | X-ray | 245 A | A/B/C/D/E/F | 1-571 | PDB |
| 4D0Z | X-ray | 220 A | A/B/C/D/E/F | 1-571 | PDB |
| 4D11 | X-ray | 285 A | A/B/C/D/E/F | 1-571 | PDB |
| 5AJN | X-ray | 167 A | A | 1-571 | PDB |
| 5AJO | X-ray | 148 A | A | 1-571 | PDB |
| 5AJP | X-ray | 165 A | A | 1-571 | PDB |
| 5FV9 | X-ray | 207 A | A/B/C/D/E/F | 1-571 | PDB |
| 5NDF | X-ray | 230 A | A/B/C/D/E/F | 1-571 | PDB |
| 6E7I | X-ray | 180 A | A | 74-571 | PDB |
| 6EGS | X-ray | 270 A | A/B | 75-571 | PDB |
| 6NQT | X-ray | 305 A | A/B/C/D/E/F | 1-571 | PDB |
| AF-Q10471-F1 | Predicted | AlphaFoldDB |
437 variants for Q10471
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV001095799 rs1663959543 |
99 | Y>* | Congenital disorder of glycosylation, type iit [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1663960324 VAR_084283 RCV001095796 |
104 | F>S | Congenital disorder of glycosylation, type iit CDG2T; loss-of-funtion variant resulting in lack of ApoC-III and IgA1 glycosylation [ClinVar, UniProt] | Yes |
ClinVar UniProt dbSNP |
|
CA345181793 RCV001095798 rs1431963909 |
200 | R>* | Congenital disorder of glycosylation, type iit Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP gnomAD |
| VAR_084284 | 200 | R>del | CDG2T; loss of ApoC-III glycosylation [UniProt] | Yes | UniProt |
|
VAR_084285 RCV001095800 rs376870425 |
210 | R>P | Congenital disorder of glycosylation, type iit CDG2T; loss of ApoC-III glycosylation [ClinVar, UniProt] | Yes |
ClinVar dbSNP UniProt |
|
RCV001095797 rs1665467473 |
289 | Q>* | Congenital disorder of glycosylation, type iit [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_084287 | 289 | Q>del | CDG2T; loss-of-funtion variant resulting in lack of ApoC-III glycosylation; b [UniProt] | Yes | UniProt |
|
rs1257760025 CA345339867 |
2 | R>P | No |
ClinGen TOPMed |
|
|
rs1257760025 CA345339866 |
2 | R>Q | No |
ClinGen TOPMed |
|
|
CA1446007 rs776589215 |
2 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA345339873 rs1258172396 |
3 | R>L | No |
ClinGen TOPMed |
|
|
rs1268260848 CA345339870 |
3 | R>W | No |
ClinGen gnomAD |
|
|
rs1342052422 CA345339876 |
4 | R>C | No |
ClinGen TOPMed |
|
|
rs1244502029 CA345339885 COSM397098 |
5 | S>L | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
CA345339881 rs1197074740 |
5 | S>P | No |
ClinGen gnomAD |
|
| TCGA novel | 6 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345339914 rs1469154148 |
10 | C>Y | No |
ClinGen gnomAD |
|
|
CA39281042 rs865947899 |
12 | A>S | No |
ClinGen Ensembl |
|
|
rs769786670 CA1446009 |
12 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs866780552 CA39281043 |
20 | A>S | No |
ClinGen Ensembl |
|
|
rs774695769 CA345339989 |
21 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs865806857 CA39281044 |
22 | Y>* | No |
ClinGen Ensembl |
|
|
CA345339991 rs1388115514 |
22 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1332085920 CA345340004 |
23 | M>I | No |
ClinGen TOPMed |
|
|
CA345339997 rs1298817264 |
23 | M>L | No |
ClinGen gnomAD |
|
|
CA345339998 rs1298817264 |
23 | M>V | No |
ClinGen gnomAD |
|
|
CA1446014 rs374592862 |
24 | Y>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1001045258 CA39281045 |
25 | S>L | No |
ClinGen TOPMed |
|
|
CA345340021 rs1270537345 |
26 | G>W | No |
ClinGen gnomAD |
|
| rs1553309006 | 27 | G>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345340028 rs1327732533 |
27 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA345340025 rs1162598295 |
27 | G>S | No |
ClinGen TOPMed |
|
|
rs867792034 CA39281047 |
28 | G>C | No |
ClinGen Ensembl |
|
|
rs868540955 CA39281048 |
28 | G>D | No |
ClinGen gnomAD |
|
|
CA1446016 rs753282220 |
30 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1182667186 CA345340057 |
33 | G>R | No |
ClinGen gnomAD |
|
|
CA345340063 rs1471554514 |
34 | G>R | No |
ClinGen gnomAD |
|
|
CA345340065 rs1471554514 |
34 | G>S | No |
ClinGen gnomAD |
|
|
rs764659688 CA1446019 |
35 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345340086 rs1349948061 |
38 | G>S | No |
ClinGen gnomAD |
|
|
CA1446021 rs529277892 |
40 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1389610156 CA345340105 |
41 | R>K | No |
ClinGen gnomAD |
|
|
CA345168796 rs1369427970 |
45 | W>G | No |
ClinGen TOPMed |
|
|
rs1572053828 CA345168809 |
46 | N>D | No |
ClinGen Ensembl |
|
|
rs1162120633 CA345168849 |
48 | I>S | No |
ClinGen gnomAD |
|
|
rs769701692 CA1446028 |
48 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345168865 rs750280888 |
49 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345168855 rs1384124277 |
49 | D>H | No |
ClinGen gnomAD |
|
|
rs994653305 CA38803858 |
50 | P>R | No |
ClinGen gnomAD |
|
|
rs749440793 CA1446030 |
51 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs770887465 CA1446031 |
52 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA345168914 rs1226625266 |
53 | K>M | No |
ClinGen gnomAD |
|
|
CA345168918 rs1379095432 |
53 | K>N | No |
ClinGen TOPMed |
|
|
CA1446032 rs201249198 |
53 | K>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1255488508 CA345168946 |
55 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1453642241 CA345168942 |
55 | D>G | No |
ClinGen TOPMed |
|
|
CA345168938 rs1312064338 |
55 | D>Y | No |
ClinGen gnomAD |
|
|
rs759784384 CA1446033 |
57 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1230875157 CA345168996 |
59 | S>N | No |
ClinGen gnomAD |
|
|
rs149587406 CA1446034 |
60 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1446037 rs764723616 |
63 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs938667236 CA38803900 |
65 | A>S | No |
ClinGen TOPMed |
|
|
rs938667236 CA345169098 |
65 | A>T | No |
ClinGen TOPMed |
|
|
CA1446039 rs139259143 |
66 | Q>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1170033446 CA345169317 |
72 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA1446040 COSM134007 rs765832960 |
72 | P>S | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs184261638 CA1446062 |
77 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
COSM905335 CA1446061 rs759042777 |
77 | R>W | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA345176602 rs1210569898 |
81 | F>L | No |
ClinGen gnomAD |
|
|
CA1446063 rs752268502 |
81 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA38820873 rs200978844 |
83 | Q>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA1446065 rs200978844 |
83 | Q>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1477223154 CA345176643 |
87 | V>I | No |
ClinGen gnomAD |
|
|
rs757194280 CA1446067 |
88 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA1446068 rs778993510 |
89 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1326959932 CA345176664 |
90 | T>M | No |
ClinGen gnomAD |
|
|
CA345176683 rs1227782777 |
93 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA345176687 rs1157676039 |
94 | S>P | No |
ClinGen gnomAD |
|
|
rs949092593 CA38820883 |
95 | G>R | Variant assessed as Somatic; 9.239e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1370421490 CA345176727 |
100 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs748654828 COSM346227 CA1446075 |
101 | R>H | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA1446076 rs748654828 |
101 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345176741 rs1350925127 |
102 | N>S | No |
ClinGen gnomAD |
|
|
CA345176746 rs1255660969 |
103 | K>E | No |
ClinGen gnomAD |
|
|
rs557579820 CA1446078 |
105 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1446077 rs773695703 |
105 | N>Y | No |
ClinGen ExAC gnomAD |
|
|
CA1446079 rs767782077 |
107 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs775232408 CA1446080 |
108 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763955106 CA1446082 |
111 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA1446083 COSM905336 rs753646036 |
113 | R>* | endometrium Variant assessed as Somatic; 4.619e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs749888628 CA1446084 |
113 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1446085 rs749888628 |
113 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1558138360 CA345176820 |
114 | M>L | No |
ClinGen Ensembl |
|
|
rs750356760 CA1446086 |
114 | M>R | No |
ClinGen ExAC gnomAD |
|
|
rs758579528 CA1446087 |
115 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA1446088 rs779946304 |
117 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs773341119 CA38820990 |
119 | P>L | No |
ClinGen TOPMed |
|
|
rs1473143485 CA345176854 |
119 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs143344842 CA1446089 |
120 | D>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA38821002 rs888284862 |
121 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA345176867 rs888284862 |
121 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA345176871 rs1558138402 |
122 | R>Q | No |
ClinGen Ensembl |
|
|
CA345176882 rs1411780938 |
124 | D>N | No |
ClinGen gnomAD |
|
|
CA1446113 rs771408585 CA345179899 |
125 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345176895 rs1424223394 |
125 | Q>R | No |
ClinGen gnomAD |
|
|
rs1572118942 CA345179915 |
126 | C>G | No |
ClinGen Ensembl |
|
|
rs556141120 CA1446115 |
128 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1446114 rs779465339 |
128 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs768184760 CA1446116 |
130 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs374359790 CA345180044 |
130 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs776457679 CA1446117 |
130 | Q>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 131 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA38804312 rs971064511 |
131 | W>R | No |
ClinGen Ensembl |
|
|
rs151140953 CA1446120 |
132 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs34322892 CA1446119 |
132 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed |
|
|
rs184677007 CA1446121 |
133 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs189511451 CA1446124 |
134 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs993912144 CA38804335 |
136 | P>L | No |
ClinGen TOPMed |
|
|
rs1366622686 CA345180258 |
139 | S>G | No |
ClinGen TOPMed |
|
|
rs570007994 CA345180286 |
140 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs570007994 CA1446128 |
140 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs757622597 CA1446131 |
146 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs1323427479 CA345180549 |
154 | R>M | No |
ClinGen gnomAD |
|
|
CA38804396 rs866994498 |
155 | T>I | No |
ClinGen Ensembl |
|
|
rs747805002 CA1446136 |
156 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs867471107 CA38804404 |
157 | V>F | No |
ClinGen Ensembl |
|
| rs143842900 | 158 | S>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1446137 rs751888471 |
158 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1291335161 CA345181505 |
159 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
CA345181503 rs1291335161 |
159 | V>M | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 161 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs545023670 CA1446167 |
163 | S>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA1446168 rs141843529 |
164 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs141843529 CA1446169 |
164 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1446171 rs765521422 |
166 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345181557 rs1449685325 |
167 | L>I | No |
ClinGen gnomAD |
|
|
CA345181561 rs1256229338 |
168 | I>L | No |
ClinGen gnomAD |
|
|
CA345181597 COSM1501189 rs1161216760 |
172 | I>M | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs767038978 CA1446174 |
179 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs537078461 CA1446176 |
181 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs1177338784 CA345181676 |
181 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
COSM261064 rs537078461 CA1446175 |
181 | P>S | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs766809206 CA1446192 |
183 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs1405399961 CA345181692 |
184 | G>R | No |
ClinGen TOPMed |
|
|
CA38805095 rs1048066861 |
185 | A>D | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 185 | A>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 185 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA38805115 rs888099654 |
186 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs753448367 CA1446196 |
188 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA1446197 rs374087942 |
190 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA345181747 rs1325567001 |
192 | K>R | No |
ClinGen gnomAD |
|
|
CA345181750 rs1411558793 |
193 | V>M | No |
ClinGen TOPMed |
|
|
CA1446200 COSM1207848 rs750040941 |
194 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs779769225 CA1446201 |
194 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1446203 rs552559804 |
195 | V>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs552559804 CA345181759 |
195 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1200412234 CA345181766 |
196 | L>F | No |
ClinGen TOPMed |
|
|
rs780976469 CA1446204 |
196 | L>P | No |
ClinGen ExAC |
|
|
CA345181786 rs1475265774 |
199 | D>N | No |
ClinGen gnomAD |
|
|
CA345181792 rs1431963909 |
200 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA1446207 rs369808855 |
200 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM905338 CA1446206 rs369808855 |
200 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA345181798 rs1005858133 |
201 | R>P | No |
ClinGen gnomAD |
|
|
rs1005858133 CA38805179 |
201 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA345181812 rs1438859528 |
202 | E>D | No |
ClinGen TOPMed |
|
|
CA345183231 rs1277233673 |
205 | M>T | No |
ClinGen gnomAD |
|
|
rs761032669 CA1446232 |
206 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA1446233 rs764812990 |
206 | R>H | Variant assessed as Somatic; 5.946e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs762432658 CA1446235 |
208 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs376870425 CA345183302 |
210 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446237 rs376870425 |
210 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA38810037 rs139591495 |
210 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP NCI-TCGA TOPMed |
|
CA1446239 rs145628006 |
212 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1232362181 CA345183326 |
212 | A>V | No |
ClinGen gnomAD |
|
|
CA345183347 rs1158121783 |
213 | D>E | No |
ClinGen TOPMed |
|
|
CA38810074 rs757320940 |
213 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs901114273 CA38810075 |
215 | A>V | No |
ClinGen TOPMed |
|
|
rs1383646483 CA345183378 |
216 | Q>E | No |
ClinGen gnomAD |
|
|
CA1446241 rs142046356 |
216 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1446242 rs755938044 |
218 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345183499 rs1184369150 |
223 | L>V | No |
ClinGen TOPMed |
|
|
CA1446245 rs757381636 |
225 | S>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 227 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345183596 rs1452772784 |
228 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA1446248 rs772502318 |
230 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA1446250 rs747399816 |
231 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA1446249 rs775654688 |
231 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 231 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1446251 COSM1738507 rs370170142 |
232 | H>Q | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA345183681 rs1341984740 |
232 | H>Y | No |
ClinGen gnomAD |
|
|
rs1461793378 CA345183730 |
235 | E>G | No |
ClinGen gnomAD |
|
|
rs1205669956 CA345183734 |
236 | P>A | No |
ClinGen gnomAD |
|
|
rs762487680 CA1446253 |
236 | P>H | No |
ClinGen ExAC gnomAD |
|
|
CA345183735 rs1205669956 |
236 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 238 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs201212164 CA1446256 |
242 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
VAR_049240 rs1923950 |
245 | R>H | No |
UniProt dbSNP |
|
|
rs1270941733 CA345184345 COSM1501187 |
245 | R>K | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
rs760418370 CA1446279 |
247 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1446278 rs775177578 |
247 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA1446281 rs753841195 COSM905339 |
254 | D>N | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA1446283 rs765263970 |
257 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA1446284 rs750530614 |
258 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs758479260 CA1446285 |
259 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs150471503 CA1446286 |
260 | N>S | No |
ClinGen ESP ExAC |
|
|
CA38812820 rs200615574 |
263 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA38812825 rs951304412 |
265 | G>R | No |
ClinGen TOPMed |
|
| VAR_084286 | 271 | K>R | likely benign variant; does not affect ApoC-III glycosylation [UniProt] | No | UniProt |
| rs142736956 | 272 | G>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1446309 rs756448084 |
274 | F>C | No |
ClinGen ExAC gnomAD |
|
|
CA345184838 rs1412645326 |
276 | W>G | No |
ClinGen gnomAD |
|
|
rs749754600 CA1446311 |
278 | L>S | No |
ClinGen ExAC |
|
|
CA1446312 rs757862876 |
279 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1431586064 CA345184906 |
285 | M>V | No |
ClinGen TOPMed |
|
|
CA345184918 COSM905343 rs1479348442 |
286 | T>M | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
| TCGA novel | 286 | T>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs768484528 CA1446315 |
288 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA38815332 rs878878591 |
289 | Q>R | No |
ClinGen Ensembl |
|
|
CA345184953 rs776404910 |
290 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA345184967 rs1413457927 |
291 | R>K | No |
ClinGen gnomAD |
|
|
rs1429490496 CA345184972 |
291 | R>S | No |
ClinGen gnomAD |
|
|
rs769587065 CA1446318 |
292 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA38815369 rs201131857 |
293 | R>Q | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA1446319 rs773042550 |
293 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA1446325 rs1553273633 |
299 | A>D | No |
ClinGen Ensembl |
|
|
CA1446324 rs199925000 |
299 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA345185084 rs1336407333 |
301 | I>T | No |
ClinGen gnomAD |
|
| TCGA novel | 305 | M>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345185337 rs1358319771 |
305 | M>L | No |
ClinGen gnomAD |
|
| TCGA novel | 305 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs565300791 CA1446353 |
313 | M>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1446354 rs78164071 |
314 | D>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA345185554 rs1273724569 |
314 | D>E | No |
ClinGen gnomAD |
|
|
CA345185565 rs1373498080 |
315 | K>E | No |
ClinGen gnomAD |
|
|
CA1446355 rs765888501 |
317 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750924674 CA1446356 |
321 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA1446358 rs780788137 |
322 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA1446357 rs754553613 |
322 | G>R | No |
ClinGen ExAC |
|
|
CA1446359 COSM1560198 rs752400838 |
323 | K>R | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs764955190 CA38816480 |
325 | D>Y | No |
ClinGen Ensembl |
|
|
rs1490001955 CA345186006 |
326 | M>V | No |
ClinGen gnomAD |
|
|
rs777276912 CA1446361 |
327 | M>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 329 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345186058 rs1222006987 |
329 | D>V | No |
ClinGen TOPMed |
|
|
CA345186084 rs1471203097 |
331 | W>* | No |
ClinGen gnomAD |
|
|
rs1572137960 CA345186128 |
335 | N>T | No |
ClinGen Ensembl |
|
|
CA1446384 rs758390037 |
338 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA1446385 rs779947137 |
339 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA345186776 rs1217411561 |
341 | R>C | No |
ClinGen gnomAD |
|
|
CA38820671 rs755413572 |
341 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs372846843 CA1446388 |
342 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 346 | G>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1205731880 CA345186815 |
347 | G>S | No |
ClinGen gnomAD |
|
|
rs1471662749 CA345186826 |
348 | S>I | No |
ClinGen TOPMed |
|
|
rs977921868 CA38820698 |
348 | S>R | No |
ClinGen TOPMed |
|
|
CA345186833 rs1440430510 |
350 | E>K | No |
ClinGen gnomAD |
|
| TCGA novel | 350 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs558526134 CA38820715 |
351 | I>T | No |
ClinGen Ensembl |
|
|
rs1476348677 CA345186862 |
354 | C>S | No |
ClinGen gnomAD |
|
|
rs773776380 CA38820730 |
356 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773776380 CA1446391 |
356 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1178087389 CA345186900 |
360 | V>M | No |
ClinGen gnomAD |
|
|
rs1279521995 CA345186910 |
361 | F>S | No |
ClinGen TOPMed |
|
| TCGA novel | 362 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1395137158 CA345186915 |
362 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA1446394 rs774689179 |
362 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs763455843 CA1446396 |
366 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1273489757 CA345186953 |
367 | Y>F | No |
ClinGen gnomAD |
|
|
rs1324319545 CA345186957 |
368 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs756971127 COSM140403 CA1446398 |
368 | T>M | skin [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs1324319545 CA345186958 |
368 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA1446400 rs376128700 |
370 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA345186980 rs1157754472 |
372 | G>S | No |
ClinGen TOPMed |
|
|
rs1262096658 CA345186997 |
374 | G>D | No |
ClinGen gnomAD |
|
|
rs1209786297 CA345187003 |
375 | T>I | No |
ClinGen gnomAD |
|
|
CA345187006 rs1489151676 |
376 | V>I | No |
ClinGen gnomAD |
|
| rs1480752948 | 378 | A>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1262417562 CA345187025 |
378 | A>V | No |
ClinGen gnomAD |
|
|
rs780074971 CA1446402 |
379 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs746876922 CA1446403 |
379 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs969720106 CA38832007 |
380 | N>D | No |
ClinGen Ensembl |
|
|
CA345188046 rs1443920478 |
381 | T>A | No |
ClinGen TOPMed |
|
|
rs1292294067 CA345188060 |
382 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1389631551 CA345188064 |
382 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1453981251 CA345188080 |
383 | R>Q | No |
ClinGen gnomAD |
|
|
rs374726944 CA1446419 |
383 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1174154735 CA345188093 |
384 | A>V | No |
ClinGen TOPMed |
|
|
rs766034985 CA1446420 |
389 | M>I | No |
ClinGen ExAC |
|
|
rs1558167505 CA345188172 |
389 | M>T | No |
ClinGen Ensembl |
|
|
rs1392060088 CA345188239 |
393 | K>R | No |
ClinGen gnomAD |
|
|
rs751515152 CA1446421 |
394 | N>D | No |
ClinGen ExAC gnomAD |
|
|
COSM1295981 CA1446422 COSM1339994 rs754934176 |
395 | F>L | Variant assessed as Somatic; 0.0 impact. large_intestine urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs200611252 CA38832035 |
396 | Y>C | No |
ClinGen 1000Genomes |
|
|
CA345188321 rs1239783153 |
398 | A>E | No |
ClinGen gnomAD |
|
|
rs1393338606 CA345188318 |
398 | A>S | No |
ClinGen TOPMed |
|
| TCGA novel | 399 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1308246065 CA345188351 |
400 | V>A | No |
ClinGen gnomAD |
|
|
rs1263640208 CA345188384 |
403 | A>T | No |
ClinGen gnomAD |
|
|
CA1446425 rs756232267 |
403 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA1446426 rs778173705 |
404 | R>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749472707 CA1446427 |
406 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA38832063 rs920316095 |
408 | Y>C | No |
ClinGen Ensembl |
|
|
rs1027958131 CA38832071 |
410 | N>H | No |
ClinGen TOPMed |
|
|
rs1038245428 CA38832221 |
411 | I>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 414 | R>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1275099915 CA345189151 |
416 | E>Q | No |
ClinGen TOPMed |
|
|
CA1446444 rs756285254 |
422 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1361366512 CA345189266 |
423 | C>F | No |
ClinGen TOPMed |
|
|
CA1446446 rs753962261 |
424 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1465191667 CA345189290 |
424 | K>R | No |
ClinGen gnomAD |
|
|
rs757478232 CA1446447 |
425 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs779172012 CA1446448 |
426 | F>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs772439449 CA1446450 |
427 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs747505499 CA38832249 |
431 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1315473228 CA345189413 |
432 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs540616116 CA1446452 |
433 | V>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 434 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs574340854 CA1446454 |
435 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 437 | L>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345189959 rs773899327 |
438 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762515605 CA1446455 |
438 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA345189974 rs1190788315 |
441 | D>H | No |
ClinGen gnomAD |
|
|
CA345189999 rs1267330568 |
444 | D>Y | No |
ClinGen TOPMed |
|
|
CA345190009 rs1441817635 |
445 | I>T | No |
ClinGen gnomAD |
|
|
CA1446476 rs201830158 |
445 | I>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA345190031 COSM1501185 rs1169786024 |
449 | A>T | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
| TCGA novel | 449 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs775483437 CA1446478 |
451 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1446477 rs771998260 |
451 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs760523823 CA1446479 |
453 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs760523823 CA345190061 |
453 | G>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 454 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs764166270 CA1446480 |
454 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA1446481 rs776668471 |
455 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs761819563 CA1446482 |
455 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA345190089 rs1307519065 |
458 | D>H | No |
ClinGen gnomAD |
|
|
CA345190109 rs1257512222 |
461 | G>R | No |
ClinGen TOPMed |
|
| TCGA novel | 466 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345190146 rs1223856596 |
466 | G>R | No |
ClinGen TOPMed |
|
|
rs1229327197 CA345190151 |
467 | V>M | No |
ClinGen gnomAD |
|
|
CA345190157 rs1292682267 |
468 | V>I | No |
ClinGen gnomAD |
|
|
CA345190167 rs1281240445 |
469 | G>A | No |
ClinGen TOPMed |
|
|
CA1446485 rs758709049 |
472 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs1233588629 CA345190191 |
473 | C>R | No |
ClinGen gnomAD |
|
| TCGA novel | 475 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs766578798 CA1446486 |
475 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 477 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1396316556 CA345191105 |
482 | W>* | No |
ClinGen gnomAD |
|
| TCGA novel | 482 | W>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA345191121 rs1336541907 |
483 | A>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA345191117 rs140514370 |
483 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446514 rs140514370 |
483 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446515 rs746599730 |
485 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA1446517 rs377338023 |
486 | K>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA345191162 rs377338023 |
486 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446519 rs769823155 |
489 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA1446521 rs763053572 |
490 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345191218 rs1202461866 |
490 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1202461866 CA345191216 |
490 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
TCGA novel rs774570005 CA1446523 |
493 | M>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen ExAC TOPMed gnomAD |
|
CA1446524 VAR_084288 rs774570005 |
493 | M>V | likely benign variant; does not affect ApoC-III glycosylation [UniProt] | No |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
|
rs767630739 CA1446525 |
494 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760917633 CA1446527 |
495 | L>S | No |
ClinGen ExAC gnomAD |
|
|
rs149595757 CA345191330 |
497 | L>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs149595757 CA1446528 |
497 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs757993288 CA1446530 |
498 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA1446529 rs754346905 |
498 | T>P | No |
ClinGen ExAC gnomAD |
|
|
CA38838556 rs138151523 |
499 | V>L | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs147219046 CA1446532 |
502 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA345191387 rs144216012 |
502 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs144216012 CA1446533 |
502 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1339997 rs147219046 CA1446531 |
502 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs780690390 CA1446534 |
503 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780690390 CA38838572 |
503 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1277634545 CA345191398 |
503 | A>V | No |
ClinGen gnomAD |
|
|
CA1446535 rs769518691 |
504 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA345191418 rs1424193071 |
505 | G>C | No |
ClinGen TOPMed |
|
|
rs1358058941 CA345191420 |
505 | G>D | No |
ClinGen Ensembl |
|
|
CA345191477 rs1342554353 |
509 | K>N | No |
ClinGen gnomAD |
|
|
CA345191487 rs1572164829 |
510 | L>R | No |
ClinGen Ensembl |
|
|
rs370275711 CA1446538 |
512 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446539 rs771005428 |
514 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs527685112 CA1446540 |
514 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759599137 CA1446541 |
515 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA1446542 rs772377224 |
516 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA345191578 rs1200487891 |
517 | D>N | No |
ClinGen gnomAD |
|
|
CA345191617 rs1159628708 |
519 | R>K | No |
ClinGen gnomAD |
|
|
rs372150000 CA1446546 |
520 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1446545 rs544481491 |
520 | Q>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 522 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 523 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 525 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs149914257 CA1446577 |
526 | E>K | No |
ClinGen ESP ExAC gnomAD |
|
|
CA1446578 rs528256081 |
527 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs780061153 CA1446579 |
528 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1410130049 CA345194133 |
529 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
CA345194142 rs1418892587 |
530 | K>E | No |
ClinGen gnomAD |
|
|
rs1186054078 CA345194151 |
530 | K>R | No |
ClinGen gnomAD |
|
|
rs1186054078 CA345194149 |
530 | K>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA1446582 rs141375194 |
534 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA345194245 rs1407202003 |
535 | G>D | No |
ClinGen TOPMed |
|
|
CA345194259 rs1467293084 |
536 | S>R | No |
ClinGen gnomAD |
|
|
CA1446583 rs748557947 |
537 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs1041571686 CA38841626 |
541 | D>N | No |
ClinGen TOPMed |
|
|
rs770238687 CA1446584 |
542 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1046665269 CA38841632 |
543 | R>C | No |
ClinGen gnomAD |
|
|
rs1046665269 CA345194392 |
543 | R>G | No |
ClinGen gnomAD |
|
|
CA1446585 rs201604838 |
543 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1446587 rs763304846 |
544 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1446586 rs763304846 |
544 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1354219221 CA345194416 |
545 | A>S | No |
ClinGen gnomAD |
|
|
CA345194462 rs1055446097 |
547 | S>I | No |
ClinGen gnomAD |
|
|
CA38841650 rs1055446097 |
547 | S>N | No |
ClinGen gnomAD |
|
|
COSM3804289 CA1446591 rs763766688 |
548 | G>R | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs763766688 CA1446590 |
548 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1176284236 CA345194493 |
549 | G>S | No |
ClinGen TOPMed |
|
|
rs1005935229 CA38841674 |
552 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA1446593 rs761608167 |
553 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs2273970 VAR_019575 CA1446594 |
554 | V>M | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1440269810 CA345194641 |
557 | P>A | No |
ClinGen TOPMed |
|
|
rs755670523 CA1446597 |
557 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755073372 CA1446599 |
559 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201753922 CA38841714 |
560 | S>A | No |
ClinGen Ensembl |
|
|
rs763060989 CA1446600 COSM1207850 |
560 | S>L | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs1467414336 CA345194726 |
562 | Q>E | No |
ClinGen gnomAD |
|
|
CA38841725 rs910517390 |
564 | K>T | No |
ClinGen Ensembl |
|
|
rs1374739963 CA345194807 |
566 | T>M | No |
ClinGen gnomAD |
|
|
rs1572169910 CA345194795 |
566 | T>P | No |
ClinGen Ensembl |
|
|
rs1302271982 CA345194815 |
567 | L>I | No |
ClinGen TOPMed |
|
|
rs371254497 CA345194820 |
567 | L>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs371254497 CA1446604 |
567 | L>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1558176463 CA345194825 |
568 | N>H | No |
ClinGen Ensembl |
|
|
rs774891271 CA1446606 |
568 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1572169947 CA345194832 |
568 | N>T | No |
ClinGen Ensembl |
|
|
CA345194859 rs1313637903 |
570 | Q>K | No |
ClinGen gnomAD |
|
|
CA1446607 rs201539108 |
571 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs1280146309 CA345194899 |
572 | Q>Q | No |
ClinGen gnomAD |
1 associated diseases with Q10471
[MIM: 618885]: Congenital disorder of glycosylation 2T (CDG2T)
A form of congenital disorder of glycosylation, a genetically heterogeneous group of multisystem disorders caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. CDG2T is an autosomal recessive form characterized by global developmental delay, intellectual disability with language deficit, autistic features, behavioral abnormalities, epilepsy, chronic insomnia, white matter changes on brain imaging, dysmorphic features, decreased stature, and decreased high density lipoprotein cholesterol levels. {ECO:0000269|PubMed:27508872, ECO:0000269|PubMed:32293671}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A form of congenital disorder of glycosylation, a genetically heterogeneous group of multisystem disorders caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. CDG2T is an autosomal recessive form characterized by global developmental delay, intellectual disability with language deficit, autistic features, behavioral abnormalities, epilepsy, chronic insomnia, white matter changes on brain imaging, dysmorphic features, decreased stature, and decreased high density lipoprotein cholesterol levels. {ECO:0000269|PubMed:27508872, ECO:0000269|PubMed:32293671}. Note=The disease is caused by variants affecting the gene represented in this entry.
Functions
| Description | ||
|---|---|---|
| EC Number | 2.4.1.41 | Hexosyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
9 GO annotations of cellular component
| Name | Definition |
|---|---|
| endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| Golgi cisterna membrane | The lipid bilayer surrounding any of the thin, flattened compartments that form the central portion of the Golgi complex. |
| Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
| Golgi stack | The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. |
| integral component of Golgi membrane | The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| perinuclear region of cytoplasm | Cytoplasm situated near, or occurring around, the nucleus. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| carbohydrate binding | Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
| manganese ion binding | Binding to a manganese ion (Mn). |
| polypeptide N-acetylgalactosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide. This reaction is the modification of serine or threonine residues in polypeptide chains by the transfer of a N-acetylgalactose from UDP-N-acetylgalactose to the hydroxyl group of the amino acid; it is the first step in O-glycan biosynthesis. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| O-glycan processing | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form a core O-glycan structure. |
| protein maturation | Any process leading to the attainment of the full functional capacity of a protein. |
| protein O-linked glycosylation | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. |
| protein O-linked glycosylation via serine | The glycosylation of protein via the O3 atom of peptidyl-serine, forming O3-glycosyl-L-serine; the most common forms are N-acetylgalactosaminyl, mannosyl, galactosyl, and xylosyl serine. |
| protein O-linked glycosylation via threonine | The glycosylation of protein via the O3 atom of peptidyl-threonine, forming O3-glycosyl-L-threonine; the most common forms are N-acetylgalactosaminyl, mannosyl, and galactosyl threonine. |
12 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q86SF2 | GALNT7 | N-acetylgalactosaminyltransferase 7 | Homo sapiens (Human) | PR |
| Q86SR1 | GALNT10 | Polypeptide N-acetylgalactosaminyltransferase 10 | Homo sapiens (Human) | PR |
| Q49A17 | GALNTL6 | Polypeptide N-acetylgalactosaminyltransferase-like 6 | Homo sapiens (Human) | PR |
| Q8IUC8 | GALNT13 | Polypeptide N-acetylgalactosaminyltransferase 13 | Homo sapiens (Human) | PR |
| Q96FL9 | GALNT14 | Polypeptide N-acetylgalactosaminyltransferase 14 | Homo sapiens (Human) | PR |
| Q8IXK2 | GALNT12 | Polypeptide N-acetylgalactosaminyltransferase 12 | Homo sapiens (Human) | PR |
| Q14435 | GALNT3 | Polypeptide N-acetylgalactosaminyltransferase 3 | Homo sapiens (Human) | PR |
| Q9NY28 | GALNT8 | Probable polypeptide N-acetylgalactosaminyltransferase 8 | Homo sapiens (Human) | PR |
| Q7Z7M9 | GALNT5 | Polypeptide N-acetylgalactosaminyltransferase 5 | Homo sapiens (Human) | PR |
| Q10472 | GALNT1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Homo sapiens (Human) | PR |
| Q8BVG5 | Galnt14 | Polypeptide N-acetylgalactosaminyltransferase 14 | Mus musculus (Mouse) | PR |
| Q8I136 | gly-4 | Polypeptide N-acetylgalactosaminyltransferase 4 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MRRRSRMLLC | FAFLWVLGIA | YYMYSGGGSA | LAGGAGGGAG | RKEDWNEIDP | IKKKDLHHSN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| GEEKAQSMET | LPPGKVRWPD | FNQEAYVGGT | MVRSGQDPYA | RNKFNQVESD | KLRMDRAIPD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TRHDQCQRKQ | WRVDLPATSV | VITFHNEARS | ALLRTVVSVL | KKSPPHLIKE | IILVDDYSND |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PEDGALLGKI | EKVRVLRNDR | REGLMRSRVR | GADAAQAKVL | TFLDSHCECN | EHWLEPLLER |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VAEDRTRVVS | PIIDVINMDN | FQYVGASADL | KGGFDWNLVF | KWDYMTPEQR | RSRQGNPVAP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| IKTPMIAGGL | FVMDKFYFEE | LGKYDMMMDV | WGGENLEISF | RVWQCGGSLE | IIPCSRVGHV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| FRKQHPYTFP | GGSGTVFARN | TRRAAEVWMD | EYKNFYYAAV | PSARNVPYGN | IQSRLELRKK |
| 430 | 440 | 450 | 460 | 470 | 480 |
| LSCKPFKWYL | ENVYPELRVP | DHQDIAFGAL | QQGTNCLDTL | GHFADGVVGV | YECHNAGGNQ |
| 490 | 500 | 510 | 520 | 530 | 540 |
| EWALTKEKSV | KHMDLCLTVV | DRAPGSLIKL | QGCRENDSRQ | KWEQIEGNSK | LRHVGSNLCL |
| 550 | 560 | 570 | |||
| DSRTAKSGGL | SVEVCGPALS | QQWKFTLNLQ | Q |