P15880
Gene name |
RPS2 (RPS4) |
Protein name |
40S ribosomal protein S2 |
Names |
40S ribosomal protein S4, Protein LLRep3, Small ribosomal subunit protein uS5 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:6187 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
91 structures for P15880
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4UG0 | EM | - | SC | 1-293 | PDB |
| 4V6X | EM | 500 A | AC | 1-293 | PDB |
| 5A2Q | EM | 390 A | C | 1-293 | PDB |
| 5AJ0 | EM | 350 A | BC | 1-293 | PDB |
| 5FLX | EM | 390 A | C | 1-293 | PDB |
| 5LKS | EM | 360 A | SC | 1-293 | PDB |
| 5OA3 | EM | 430 A | C | 1-293 | PDB |
| 5T2C | EM | 360 A | AJ | 1-293 | PDB |
| 5VYC | X-ray | 600 A | C1/C2/C3/C4/C5/C6 | 1-293 | PDB |
| 6G18 | EM | 360 A | C | 1-293 | PDB |
| 6G4S | EM | 400 A | C | 1-293 | PDB |
| 6G51 | EM | 410 A | C | 1-293 | PDB |
| 6G53 | EM | 450 A | C | 1-293 | PDB |
| 6G5H | EM | 360 A | C | 1-293 | PDB |
| 6G5I | EM | 350 A | C | 1-293 | PDB |
| 6IP5 | EM | 390 A | 3G | 1-293 | PDB |
| 6IP6 | EM | 450 A | 3G | 1-293 | PDB |
| 6IP8 | EM | 390 A | 3G | 1-293 | PDB |
| 6OLE | EM | 310 A | SC | 59-278 | PDB |
| 6OLF | EM | 390 A | SC | 59-278 | PDB |
| 6OLG | EM | 340 A | BC | 57-278 | PDB |
| 6OLI | EM | 350 A | SC | 59-278 | PDB |
| 6OLZ | EM | 390 A | BC | 57-278 | PDB |
| 6OM0 | EM | 310 A | SC | 59-278 | PDB |
| 6OM7 | EM | 370 A | SC | 59-278 | PDB |
| 6QZP | EM | 290 A | SC | 59-280 | PDB |
| 6XA1 | EM | 280 A | SC | 59-278 | PDB |
| 6Y0G | EM | 320 A | SC | 1-293 | PDB |
| 6Y2L | EM | 300 A | SC | 1-293 | PDB |
| 6Y57 | EM | 350 A | SC | 1-293 | PDB |
| 6YBD | EM | 330 A | L | 1-293 | PDB |
| 6YBW | EM | 310 A | L | 1-293 | PDB |
| 6Z6L | EM | 300 A | SC | 1-293 | PDB |
| 6Z6M | EM | 310 A | SC | 1-293 | PDB |
| 6Z6N | EM | 290 A | SC | 1-293 | PDB |
| 6ZLW | EM | 260 A | D | 1-293 | PDB |
| 6ZM7 | EM | 270 A | SC | 1-293 | PDB |
| 6ZME | EM | 300 A | SC | 1-293 | PDB |
| 6ZMI | EM | 260 A | SC | 1-293 | PDB |
| 6ZMO | EM | 310 A | SC | 1-293 | PDB |
| 6ZMT | EM | 300 A | D | 1-293 | PDB |
| 6ZMW | EM | 370 A | L | 1-293 | PDB |
| 6ZN5 | EM | 320 A | D | 59-276 | PDB |
| 6ZOJ | EM | 280 A | C | 1-293 | PDB |
| 6ZOK | EM | 280 A | C | 1-293 | PDB |
| 6ZON | EM | 300 A | d | 1-293 | PDB |
| 6ZP4 | EM | 290 A | d | 1-293 | PDB |
| 6ZUO | EM | 310 A | C | 1-293 | PDB |
| 6ZV6 | EM | 290 A | C | 1-293 | PDB |
| 6ZVH | EM | 290 A | C | 59-280 | PDB |
| 6ZVJ | EM | 380 A | d | 60-275 | PDB |
| 6ZXD | EM | 320 A | C | 1-293 | PDB |
| 6ZXE | EM | 300 A | C | 1-293 | PDB |
| 6ZXF | EM | 370 A | C | 1-293 | PDB |
| 6ZXG | EM | 260 A | C | 1-293 | PDB |
| 6ZXH | EM | 270 A | C | 1-293 | PDB |
| 7A09 | EM | 350 A | d | 1-293 | PDB |
| 7JQB | EM | 270 A | D | 1-293 | PDB |
| 7JQC | EM | 330 A | D | 1-293 | PDB |
| 7K5I | EM | 290 A | C | 1-293 | PDB |
| 7QP6 | EM | 470 A | L | 1-293 | PDB |
| 7QP7 | EM | 370 A | L | 1-293 | PDB |
| 7QVP | EM | 300 A | RC/SC | 1-293 | PDB |
| 7R4X | EM | 215 A | C | 1-293 | PDB |
| 7TQL | EM | 340 A | D | 59-276 | PDB |
| 7WTV | EM | 350 A | C | 1-293 | PDB |
| 7WTW | EM | 320 A | C | 1-293 | PDB |
| 7WTX | EM | 310 A | C | 1-293 | PDB |
| 7WTZ | EM | 300 A | C | 1-293 | PDB |
| 7WU0 | EM | 330 A | C | 1-293 | PDB |
| 7XNX | EM | 270 A | SC | 1-293 | PDB |
| 7XNY | EM | 250 A | SC | 1-293 | PDB |
| 8G5Y | EM | 229 A | SC | 1-293 | PDB |
| 8G5Z | EM | 264 A | SC | 59-280 | PDB |
| 8G60 | EM | 254 A | SC | 1-293 | PDB |
| 8G61 | EM | 294 A | SC | 1-293 | PDB |
| 8G6J | EM | 280 A | SC | 1-293 | PDB |
| 8GLP | EM | 167 A | SC | 1-293 | PDB |
| 8IFD | EM | 259 A | 3G | 1-293 | PDB |
| 8IFE | EM | 257 A | 3G | 1-293 | PDB |
| 8JDJ | EM | 250 A | z | 1-293 | PDB |
| 8JDK | EM | 226 A | z | 1-293 | PDB |
| 8JDL | EM | 242 A | z | 1-293 | PDB |
| 8JDM | EM | 267 A | z | 1-293 | PDB |
| 8OZ0 | EM | 350 A | O | 1-293 | PDB |
| 8PPK | EM | 298 A | C | 1-293 | PDB |
| 8PPL | EM | 265 A | AC | 1-293 | PDB |
| 8T4S | EM | 260 A | C | 1-293 | PDB |
| 8Y0W | EM | 340 A | SC | 1-293 | PDB |
| 8Y0X | EM | 330 A | SC | 1-293 | PDB |
| AF-P15880-F1 | Predicted | AlphaFoldDB |
222 variants for P15880
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA394272852 rs1567318687 |
2 | A>G | No |
ClinGen Ensembl |
|
|
CA7823903 rs770974083 |
6 | G>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 6 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs762654490 CA7823901 |
7 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823902 rs747260490 |
7 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs762654490 CA394272790 |
7 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823900 rs772256506 |
8 | A>T | No |
ClinGen ExAC |
|
|
rs1223985092 CA394272784 |
8 | A>V | No |
ClinGen gnomAD |
|
|
rs989713704 CA394272771 |
9 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs989713704 CA276754449 |
9 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA276754462 rs12397561 CA7823898 |
9 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs989713704 CA394272768 |
9 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394272774 rs12397561 |
9 | G>W | No |
ClinGen ExAC gnomAD |
|
|
rs1304830476 CA394272759 |
10 | G>A | No |
ClinGen gnomAD |
|
|
CA276754444 rs958307866 |
10 | G>R | No |
ClinGen Ensembl |
|
|
rs780574188 CA7823894 |
11 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA394272749 rs199558614 |
11 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA7823896 rs199558614 |
11 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276754404 CA7823892 rs751281003 |
12 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 12 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7823893 rs751281003 |
12 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394272716 rs1158100558 |
13 | G>D | No |
ClinGen gnomAD |
|
|
rs752493327 CA7823889 |
14 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1197854287 CA394272699 |
15 | G>S | No |
ClinGen gnomAD |
|
|
CA7823888 rs7204258 |
16 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276754394 rs7204258 |
16 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs753857917 | 16 | G>missing | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759395923 CA7823887 |
17 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs532422534 CA7823886 |
18 | G>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA7823883 CA7823882 rs760788760 |
19 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1462933757 CA394272617 |
20 | G>E | No |
ClinGen gnomAD |
|
|
rs1281652651 CA394272620 |
20 | G>R | No |
ClinGen gnomAD |
|
|
rs773241417 CA276754367 |
21 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773241417 CA7823881 |
21 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772350714 CA7823880 |
22 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA394272581 rs11543072 |
23 | G>D | No |
ClinGen gnomAD |
|
|
rs1344704493 CA394272583 |
23 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1344704493 CA394272585 |
23 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA276754365 rs11543072 |
23 | G>V | No |
ClinGen gnomAD |
|
|
CA7823879 rs748360461 |
24 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs11538721 CA394272551 |
27 | G>E | No |
ClinGen gnomAD |
|
|
rs11538721 CA276754359 |
27 | G>V | No |
ClinGen gnomAD |
|
|
CA394272549 rs1597039617 |
28 | G>S | No |
ClinGen Ensembl |
|
|
CA276754356 rs11543094 |
28 | G>V | No |
ClinGen Ensembl |
|
|
CA394272502 rs1174971944 |
32 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1365798435 CA394272471 |
35 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 36 | R>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7823876 rs749792856 |
38 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs780562414 CA7823875 |
40 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394272351 rs1328635891 |
41 | G>V | No |
ClinGen TOPMed |
|
|
rs756667522 CA7823872 |
42 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746558635 CA7823871 |
45 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 48 | R>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7823864 rs752326265 |
49 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs1322740881 CA394272219 |
50 | A>P | No |
ClinGen gnomAD |
|
|
CA7823863 rs764971592 |
50 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA394272201 rs1359566012 |
52 | G>R | No |
ClinGen gnomAD |
|
|
rs1334790430 CA394272163 |
55 | A>D | No |
ClinGen gnomAD |
|
| TCGA novel | 55 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1334790430 CA394272159 |
55 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 56 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753552285 CA7823860 |
56 | E>Q | No |
ClinGen ExAC |
|
|
CA276754132 rs1029985840 CA394272087 |
60 | W>C | No |
ClinGen TOPMed |
|
|
rs139767914 CA7823820 CA7823821 |
61 | M>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1222079959 CA394272081 |
61 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1222079959 CA394272082 |
61 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394272071 rs866276648 |
62 | P>A | No |
ClinGen TOPMed |
|
|
CA276754127 rs866276648 |
62 | P>S | No |
ClinGen TOPMed |
|
|
CA394272052 rs1597039341 |
63 | V>G | No |
ClinGen Ensembl |
|
|
rs1364094385 CA394272032 |
65 | K>M | No |
ClinGen gnomAD |
|
|
rs763240039 CA7823815 |
67 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA7823814 rs368176620 |
68 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394271988 rs1195590985 |
69 | L>F | No |
ClinGen gnomAD |
|
|
rs1411219537 CA394271968 |
71 | K>M | No |
ClinGen gnomAD |
|
|
rs1428215411 CA394271965 CA394271963 |
71 | K>N | No |
ClinGen TOPMed |
|
|
rs771532107 CA7823810 |
72 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276754093 rs773232994 |
73 | M>I | No |
ClinGen Ensembl |
|
|
CA394271909 rs1266498173 |
75 | I>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1208958881 CA394271901 |
76 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1567318373 CA394271892 |
77 | S>A | No |
ClinGen Ensembl |
|
|
CA7823809 rs761069719 |
77 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394271888 rs761069719 |
77 | S>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394271883 rs746887497 |
78 | L>V | No |
ClinGen TOPMed |
|
|
CA7823807 rs767988974 |
79 | E>A | No |
ClinGen ExAC gnomAD |
|
|
rs374258583 CA394271851 |
80 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1015985571 CA276754082 |
80 | E>G | No |
ClinGen Ensembl |
|
|
CA7823804 rs769415014 |
81 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs745704132 CA276754069 |
82 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA7823803 rs745704132 |
82 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
rs1201265849 CA394271819 |
83 | L>V | No |
ClinGen TOPMed |
|
|
rs370163380 CA7823799 |
85 | S>F | No |
ClinGen ESP ExAC gnomAD |
|
|
rs752801500 CA394271734 |
87 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752801500 CA7823795 |
87 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823747 rs757776418 |
98 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs751997551 CA7823746 |
100 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs1207931958 CA394270304 |
101 | S>F | No |
ClinGen gnomAD |
|
|
CA276753389 rs990662419 |
103 | K>E | No |
ClinGen TOPMed |
|
|
rs764747805 CA7823745 |
103 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs1297107737 CA394270261 |
105 | E>D | No |
ClinGen gnomAD |
|
|
CA7823744 rs759094044 |
105 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1340327640 CA394270262 |
105 | E>V | No |
ClinGen gnomAD |
|
|
CA7823742 rs766012844 |
110 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA276753386 rs1035105096 |
113 | Q>* | No |
ClinGen TOPMed |
|
|
rs760357971 CA7823741 |
117 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394270131 rs1368370305 |
117 | R>H | No |
ClinGen gnomAD |
|
|
rs867556469 CA276753383 |
119 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs1597037811 CA394270067 |
121 | R>C | No |
ClinGen Ensembl |
|
|
CA394270062 rs1415317836 |
121 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA394270052 rs1179553053 |
122 | T>I | No |
ClinGen gnomAD |
|
|
rs924906278 CA276753283 |
126 | A>S | No |
ClinGen Ensembl |
|
|
rs11543107 CA276753282 |
126 | A>V | No |
ClinGen Ensembl |
|
|
rs1429351694 CA394269825 |
129 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1429351694 CA394269822 |
129 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1165095549 CA394269808 |
131 | G>R | No |
ClinGen gnomAD |
|
|
rs766466013 CA7823650 |
133 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs11543098 CA7823649 |
134 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276753252 rs11543098 |
134 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201628829 CA7823648 |
134 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs767849793 CA7823647 |
135 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA7823644 rs769075167 |
137 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1353635350 CA394269732 |
138 | G>S | No |
ClinGen gnomAD |
|
|
CA394269658 rs1388559512 |
144 | S>F | No |
ClinGen Ensembl |
|
|
rs927854415 CA276753238 |
145 | K>R | No |
ClinGen TOPMed |
|
|
CA394269615 rs1597037291 |
147 | V>G | No |
ClinGen Ensembl |
|
|
rs778796528 CA7823635 |
154 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs753605404 CA7823633 |
156 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA394269451 rs1246988614 |
157 | L>P | No |
ClinGen gnomAD |
|
|
rs750576891 CA7823630 |
159 | K>M | No |
ClinGen ExAC gnomAD |
|
|
rs767441011 CA7823629 |
159 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA394269374 rs1466214610 |
162 | I>V | No |
ClinGen gnomAD |
|
|
CA394269350 rs1227600615 |
163 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
CA394269355 rs1227600615 |
163 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA394269338 rs1238607990 |
164 | P>A | No |
ClinGen TOPMed |
|
|
CA394269329 rs1345449379 |
164 | P>H | No |
ClinGen gnomAD |
|
|
CA394269316 rs1231356093 |
165 | V>L | No |
ClinGen gnomAD |
|
|
CA394269303 rs1330678784 |
166 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1567317156 CA394269298 |
166 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
rs1321337545 CA394269293 |
167 | R>G | No |
ClinGen gnomAD |
|
|
CA394269268 rs1387106171 |
168 | G>A | No |
ClinGen TOPMed |
|
|
CA7823624 rs543253316 |
172 | N>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs11543118 CA276753208 |
173 | K>N | No |
ClinGen Ensembl |
|
|
CA394269133 rs770479865 |
174 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759902795 CA7823622 |
175 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1427710783 CA394269076 |
177 | P>T | No |
ClinGen gnomAD |
|
|
rs1171113495 CA394269052 |
178 | H>R | No |
ClinGen gnomAD |
|
|
rs11543074 CA276753200 |
178 | H>Y | No |
ClinGen Ensembl |
|
|
CA394268997 rs1376665253 |
181 | P>S | No |
ClinGen gnomAD |
|
|
CA394268962 rs1188695244 |
183 | K>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1264827706 CA394268839 |
184 | V>M | No |
ClinGen TOPMed |
|
|
CA7823596 rs748885661 |
187 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs775271566 CA7823595 |
187 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276753137 rs11543075 |
188 | C>R | No |
ClinGen Ensembl |
|
|
COSM3420817 rs76844476 CA276753134 |
194 | R>C | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA7823592 rs76844476 |
194 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA394268603 rs1251329879 |
197 | P>L | No |
ClinGen gnomAD |
|
|
rs566623400 CA7823590 |
198 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs566623400 CA394268601 |
198 | A>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA276753121 rs17856937 |
202 | T>I | No |
ClinGen Ensembl |
|
| TCGA novel | 205 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs533119033 CA7823584 |
208 | P>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 210 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA7823582 rs761232903 |
211 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA7823580 rs763531958 |
213 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775074747 CA7823578 |
215 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769466457 CA7823577 |
215 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs1003181864 CA276753046 |
218 | G>S | No |
ClinGen TOPMed |
|
| TCGA novel | 219 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA394268228 rs1412555185 |
219 | I>V | No |
ClinGen gnomAD |
|
|
rs145914766 CA7823574 |
220 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1398145021 CA394268211 |
220 | D>N | No |
ClinGen TOPMed |
|
|
CA7823573 rs746875524 |
222 | C>S | No |
ClinGen ExAC gnomAD |
|
|
CA276753019 rs929142323 |
224 | T>I | No |
ClinGen TOPMed |
|
|
rs1217398563 CA394268117 |
225 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA7823570 rs748212461 |
227 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823571 rs369095700 |
227 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs779039730 CA7823569 |
228 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754211411 CA7823567 |
230 | T>A | No |
ClinGen ExAC gnomAD |
|
|
CA394267994 rs1219448992 |
230 | T>S | No |
ClinGen gnomAD |
|
|
rs780411000 CA7823566 |
231 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs750894365 CA7823564 |
237 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823478 rs748534788 |
243 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs11543069 CA276752636 |
245 | S>F | No |
ClinGen Ensembl |
|
| TCGA novel | 245 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 247 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA276752629 rs11539480 |
247 | T>N | No |
ClinGen Ensembl |
|
|
CA394266192 rs1452021980 |
251 | L>V | No |
ClinGen gnomAD |
|
|
CA276751374 rs11543112 |
252 | T>N | No |
ClinGen Ensembl |
|
|
rs1466154917 CA394266158 |
253 | P>H | No |
ClinGen gnomAD |
|
|
rs374773804 CA7823474 |
254 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394266145 rs1259319580 |
254 | D>G | No |
ClinGen TOPMed |
|
|
rs1192932025 CA394266151 |
254 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1346027608 CA394266056 |
259 | T>S | No |
ClinGen gnomAD |
|
|
rs751433066 CA7823472 |
260 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA394266031 rs777377021 |
261 | F>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA276751302 rs1051537930 |
264 | S>P | No |
ClinGen TOPMed |
|
|
CA394265960 rs1437914020 |
266 | Y>F | No |
ClinGen gnomAD |
|
|
CA394265946 rs1361313392 |
267 | Q>H | No |
ClinGen TOPMed |
|
|
CA394265891 rs1597036480 |
271 | D>A | No |
ClinGen Ensembl |
|
|
CA276751279 rs3211583 |
272 | H>P | No |
ClinGen Ensembl |
|
|
CA7823466 rs753906824 |
274 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1393972551 CA394265826 |
276 | T>A | No |
ClinGen gnomAD |
|
|
rs760750249 CA7823464 |
276 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1393972551 CA394265827 |
276 | T>P | No |
ClinGen gnomAD |
|
|
rs772283358 CA7823462 |
278 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394265795 rs772283358 |
278 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762435329 CA7823461 |
279 | R>K | No |
ClinGen ExAC gnomAD |
|
|
CA276751181 rs992070916 |
280 | V>A | No |
ClinGen Ensembl |
|
|
rs140783691 CA7823458 |
280 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs140783691 CA394265766 |
280 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs140783691 CA7823459 |
280 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142405634 CA7823456 |
282 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1230644525 CA394265730 |
283 | Q>* | No |
ClinGen gnomAD |
|
|
CA7823454 rs367578393 |
284 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs746578617 CA7823455 |
284 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394265697 rs758173961 |
285 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs758173961 CA7823453 |
285 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7823452 rs752453825 |
286 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA394265673 rs1168272425 |
287 | A>V | No |
ClinGen Ensembl |
|
|
rs1056415734 CA276751160 |
288 | P>L | No |
ClinGen TOPMed |
|
|
CA394265667 rs1180756035 |
288 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
| TCGA novel | 289 | A>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs778885599 CA7823450 |
289 | A>V | No |
ClinGen ExAC gnomAD |
No associated diseases with P15880
9 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| cytosolic ribosome | A ribosome located in the cytosol. |
| cytosolic small ribosomal subunit | The small subunit of a ribosome located in the cytosol. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| focal adhesion | A cell-substrate junction that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments. In insects focal adhesion has also been referred to as hemi-adherens junction (HAJ). |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
6 GO annotations of molecular function
| Name | Definition |
|---|---|
| cadherin binding | Binding to cadherin, a type I membrane protein involved in cell adhesion. |
| enzyme binding | Binding to an enzyme, a protein with catalytic activity. |
| fibroblast growth factor binding | Binding to a fibroblast growth factor. |
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| cytoplasmic translation | The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. |
| positive regulation of ubiquitin-protein transferase activity | Any process that activates, maintains or increases the rate of ubiquitin transferase activity. |
| translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| O18789 | RPS2 | 40S ribosomal protein S2 | Bos taurus (Bovine) | PR |
| P25444 | Rps2 | 40S ribosomal protein S2 | Mus musculus (Mouse) | PR |
| P27952 | Rps2 | 40S ribosomal protein S2 | Rattus norvegicus (Rat) | PR |
| P93014 | PCMP-H6 | 30S ribosomal protein S5, chloroplastic | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MADDAGAAGG | PGGPGGPGMG | NRGGFRGGFG | SGIRGRGRGR | GRGRGRGRGA | RGGKAEDKEW |
| 70 | 80 | 90 | 100 | 110 | 120 |
| MPVTKLGRLV | KDMKIKSLEE | IYLFSLPIKE | SEIIDFFLGA | SLKDEVLKIM | PVQKQTRAGQ |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RTRFKAFVAI | GDYNGHVGLG | VKCSKEVATA | IRGAIILAKL | SIVPVRRGYW | GNKIGKPHTV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PCKVTGRCGS | VLVRLIPAPR | GTGIVSAPVP | KKLLMMAGID | DCYTSARGCT | ATLGNFAKAT |
| 250 | 260 | 270 | 280 | 290 | |
| FDAISKTYSY | LTPDLWKETV | FTKSPYQEFT | DHLVKTHTRV | SVQRTQAPAV | ATT |