Q9UID3
Gene name |
VPS51 (ANG2, C11orf2, C11orf3, FFR, PP5382) |
Protein name |
Vacuolar protein sorting-associated protein 51 homolog |
Names |
Another new gene 2 protein, Protein fat-free homolog |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:738 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for Q9UID3
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4J2C | X-ray | 180 A | B/D | 33-49 | PDB |
| AF-Q9UID3-F1 | Predicted | AlphaFoldDB |
674 variants for Q9UID3
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000852346 rs752863502 |
474 | F>missing | Pontocerebellar hypoplasia, type 13 [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_083138 | 474 | F>del | PCH13; unknown pathological significance [UniProt] | Yes | UniProt |
|
RCV001542066 VAR_083139 CA381222738 RCV000852345 rs1203009966 |
490 | R>C | Pontocerebellar hypoplasia, type 13 PCH13; impaired association with VPS50 and VPS53 subunits; reduced levels of assembled GARP and EARP complexes [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
|
rs1590815040 RCV000852344 |
745 | D>missing | Pontocerebellar hypoplasia, type 13 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA381217491 rs1275374142 |
2 | A>T | No |
ClinGen gnomAD |
|
|
CA381217496 rs1439640421 |
2 | A>V | No |
ClinGen gnomAD |
|
|
CA381217506 rs766610118 |
4 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs934422727 CA223905547 |
4 | A>T | No |
ClinGen TOPMed |
|
|
CA6090237 rs766610118 |
4 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755439481 CA6090239 |
5 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381217507 rs754247915 |
5 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090238 rs754247915 |
5 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755439481 CA223905553 |
5 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381217510 rs1194073035 |
6 | A>T | No |
ClinGen gnomAD |
|
|
CA223905563 rs765807256 |
7 | A>G | No |
ClinGen ExAC TOPMed |
|
|
rs962847102 CA223905560 |
7 | A>P | No |
ClinGen Ensembl |
|
|
CA6090240 rs765807256 |
7 | A>V | No |
ClinGen ExAC TOPMed |
|
|
rs758537539 CA6090242 |
9 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090241 rs753322601 |
9 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381217533 rs1326427707 |
10 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs747134833 CA6090244 |
11 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090243 rs777921734 |
11 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs757532613 CA6090245 |
12 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090246 rs779664684 |
12 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA223905601 rs764092824 |
15 | P>H | No |
ClinGen TOPMed gnomAD |
|
|
rs749061638 CA6090247 |
15 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381217579 rs1212936852 |
18 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
CA381217580 rs1212936852 |
18 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
rs768484102 CA6090248 |
19 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA381217601 rs921803718 |
22 | P>A | No |
ClinGen TOPMed |
|
|
CA223905622 rs921803718 |
22 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 23 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381217614 rs1466973145 |
24 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs774271870 CA6090250 |
25 | E>G | No |
ClinGen ExAC gnomAD |
|
| rs1215813683 | 25 | E>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381217637 rs1242690278 |
27 | P>L | No |
ClinGen gnomAD |
|
|
CA381217649 rs1165689580 |
29 | R>L | No |
ClinGen gnomAD |
|
|
CA6090251 rs748143996 |
29 | R>S | No |
ClinGen ExAC |
|
|
CA381217654 rs1461590094 |
30 | R>Q | No |
ClinGen gnomAD |
|
|
CA223905636 rs976787069 |
30 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA6090252 rs771429081 |
32 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1440709728 CA381217697 |
33 | A>V | No |
ClinGen gnomAD |
|
|
rs760193484 CA6090254 |
34 | H>R | No |
ClinGen ExAC gnomAD |
|
|
CA381217716 rs1220937246 |
35 | G>R | No |
ClinGen TOPMed |
|
|
rs1269620910 CA381217729 |
36 | M>V | No |
ClinGen gnomAD |
|
|
rs1590808529 CA381217749 |
37 | L>V | No |
ClinGen Ensembl |
|
|
rs766029315 CA6090255 |
39 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs766029315 CA6090256 |
39 | L>I | No |
ClinGen ExAC gnomAD |
|
|
rs1235296140 CA381217820 |
41 | Y>* | No |
ClinGen gnomAD |
|
|
rs1319997959 CA381217828 |
42 | G>D | No |
ClinGen TOPMed |
|
|
CA381217823 rs1271577870 |
42 | G>S | No |
ClinGen gnomAD |
|
|
CA6090257 rs759974190 |
44 | S>L | No |
ClinGen ExAC gnomAD |
|
|
CA381217860 rs1212888627 |
45 | E>K | No |
ClinGen gnomAD |
|
|
CA381217880 rs1284827928 |
46 | G>R | No |
ClinGen gnomAD |
|
|
CA6090258 rs765753742 |
47 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA6090259 rs753196138 |
47 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs1240948546 CA381217912 |
48 | A>V | No |
ClinGen gnomAD |
|
|
CA223905645 rs985900909 |
49 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA223905648 rs910415794 |
50 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
CA6090261 rs764042264 |
53 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1399406127 CA381217995 |
55 | P>S | No |
ClinGen gnomAD |
|
|
rs1590808583 CA381218009 |
56 | D>A | No |
ClinGen Ensembl |
|
|
CA6090262 rs751682957 |
56 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA381218038 rs1286263929 |
58 | L>P | No |
ClinGen TOPMed |
|
|
CA6090265 rs746159343 |
60 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs781448808 CA6090264 |
60 | P>T | No |
ClinGen ExAC gnomAD |
|
|
rs1283552589 CA381218747 |
61 | T>I | No |
ClinGen gnomAD |
|
|
rs199696581 CA6090266 |
63 | L>V | No |
ClinGen 1000Genomes ExAC |
|
|
CA6090267 rs778695738 |
66 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1212454100 CA381218812 |
66 | A>T | No |
ClinGen gnomAD |
|
|
CA6090268 rs778695738 |
66 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA6090269 rs772067181 |
67 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090270 rs773068702 |
69 | D>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 69 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA223905672 rs978686697 |
71 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA381218920 rs1590808626 |
73 | Y>S | No |
ClinGen Ensembl |
|
|
rs1590808634 CA381218967 |
76 | K>R | No |
ClinGen Ensembl |
|
|
rs758165452 CA6090289 |
78 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777761330 CA6090290 |
79 | R>G | No |
ClinGen ExAC |
|
|
rs140845832 CA6090291 |
81 | C>G | No |
ClinGen ESP ExAC TOPMed |
|
|
CA6090292 rs770416035 |
81 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1461096393 CA381219142 |
82 | P>L | No |
ClinGen gnomAD |
|
|
rs1565307908 CA381219135 |
82 | P>S | No |
ClinGen Ensembl |
|
|
rs555025775 CA223905854 |
83 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA381219183 rs769592721 |
85 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381219168 rs1442928823 |
85 | Q>K | No |
ClinGen gnomAD |
|
|
rs745479049 CA6090294 |
85 | Q>R | No |
ClinGen ExAC |
|
|
rs1296844928 CA381219196 |
86 | L>W | No |
ClinGen TOPMed |
|
|
CA381219214 rs1428514005 |
87 | M>T | No |
ClinGen TOPMed |
|
|
rs1328083931 CA381219224 |
88 | D>A | No |
ClinGen TOPMed |
|
|
CA381219254 rs1318748222 |
90 | E>G | No |
ClinGen TOPMed |
|
|
rs763347191 CA6090297 |
90 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs768972176 CA6090298 |
92 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA381219329 rs1197646396 |
95 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA381219348 rs1434860273 |
96 | Q>R | No |
ClinGen TOPMed |
|
|
rs1590808933 CA381219378 |
98 | R>Q | No |
ClinGen Ensembl |
|
|
rs377434441 CA6090299 |
103 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1252981771 CA381219465 |
104 | M>I | No |
ClinGen gnomAD |
|
|
CA223905884 rs992781710 |
106 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA381219497 rs992781710 |
106 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1461620396 CA381219537 |
109 | Y>C | No |
ClinGen gnomAD |
|
|
CA6090302 rs750521037 |
110 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs1442905370 CA381219603 |
112 | Y>* | No |
ClinGen gnomAD |
|
|
CA6090304 rs760788710 |
117 | S>* | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 118 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1382739279 CA381219708 |
119 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
CA223909824 rs1029999391 |
122 | I>S | No |
ClinGen Ensembl |
|
|
rs1254869411 CA381220292 |
123 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA381220290 rs1194171165 |
123 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA223909827 rs985340822 |
126 | K>N | No |
ClinGen TOPMed |
|
|
CA6090330 rs750454548 |
126 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs755676326 CA6090331 |
127 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs779447026 CA6090332 |
128 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090333 rs758310660 |
131 | K>Q | No |
ClinGen ExAC gnomAD |
|
|
rs911245369 CA223909841 |
132 | M>V | No |
ClinGen Ensembl |
|
|
rs778672289 CA6090335 |
135 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1355881 CA223909848 rs994921375 |
138 | R>W | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA381220408 rs1364182948 |
139 | L>R | No |
ClinGen gnomAD |
|
|
rs772490291 CA6090339 |
140 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs371673983 CA6090341 |
142 | N>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1345270174 CA381220426 |
142 | N>K | No |
ClinGen TOPMed |
|
|
CA6090342 rs770929751 |
145 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1280235493 CA381220449 |
146 | I>V | No |
ClinGen TOPMed |
|
|
CA223909885 rs138611642 |
147 | T>I | No |
ClinGen ESP |
|
|
rs1590812539 CA381220460 |
148 | D>N | No |
ClinGen Ensembl |
|
|
rs1565313932 CA381220474 |
149 | F>L | No |
ClinGen Ensembl |
|
|
CA381220470 rs1270139632 |
149 | F>V | No |
ClinGen TOPMed |
|
|
CA381220484 rs1242122125 |
151 | A>T | No |
ClinGen gnomAD |
|
|
CA381220504 rs1476146408 |
154 | S>G | No |
ClinGen gnomAD |
|
|
CA381220522 rs1422535406 |
156 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
CA223909900 rs867252838 |
157 | L>M | No |
ClinGen Ensembl |
|
|
rs373727258 CA6090347 |
159 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs761697875 CA6090348 |
160 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs767480415 CA6090349 |
160 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA6090351 rs375116322 |
161 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6090352 rs765877173 |
162 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs753315034 CA6090353 |
163 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA381220562 rs1277774798 |
163 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
CA6090355 rs778422105 |
168 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757681617 CA6090377 |
170 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs568943722 CA6090379 |
172 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA6090380 rs769706575 |
173 | L>V | No |
ClinGen ExAC |
|
|
CA381220773 rs1438318311 |
174 | L>P | No |
ClinGen gnomAD |
|
|
CA6090382 rs141196474 |
175 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs994312359 CA223910018 |
175 | R>W | No |
ClinGen gnomAD |
|
|
rs1415675782 CA381220787 |
177 | L>V | No |
ClinGen TOPMed |
|
|
rs371725117 CA6090383 |
178 | Q>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1171011717 CA381220822 |
182 | E>* | No |
ClinGen gnomAD |
|
|
CA6090384 rs774767428 |
182 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1200018788 CA381220833 |
184 | P>A | No |
ClinGen TOPMed |
|
|
CA381220843 rs1444474433 |
185 | S>L | No |
ClinGen gnomAD |
|
|
rs1308524421 CA381220846 |
186 | R>C | Variant assessed as Somatic; 7.617e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA381220847 rs1347950961 |
186 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs776371488 CA6090387 |
189 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA381220874 rs1253770959 |
190 | C>Y | No |
ClinGen gnomAD |
|
|
CA6090389 rs543553538 |
191 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA223910042 rs543553538 |
191 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090390 rs752224750 |
193 | L>R | No |
ClinGen ExAC gnomAD |
|
|
rs1456768148 CA381220895 |
194 | G>C | No |
ClinGen gnomAD |
|
|
rs1178554856 CA381220896 |
194 | G>V | No |
ClinGen gnomAD |
|
|
rs762499687 CA6090391 |
196 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA6090392 rs763705454 |
198 | Q>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381220930 rs1372907310 |
199 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
COSM239002 rs757550478 CA6090394 |
201 | R>H | prostate [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA381220951 rs1402186357 |
203 | Q>E | No |
ClinGen gnomAD |
|
|
rs1018118672 CA223910073 |
205 | R>C | No |
ClinGen gnomAD |
|
|
rs1223032784 CA381220967 |
205 | R>H | No |
ClinGen Ensembl |
|
|
rs1330555567 CA381220969 |
206 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1371591558 CA381220974 |
206 | A>V | No |
ClinGen gnomAD |
|
|
COSM3383722 rs781632162 CA6090395 |
208 | A>T | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA223910086 rs137860347 |
209 | V>M | No |
ClinGen 1000Genomes gnomAD |
|
|
CA223910088 rs868780132 |
212 | Q>H | No |
ClinGen Ensembl |
|
|
CA381221009 rs1259652479 |
212 | Q>P | No |
ClinGen gnomAD |
|
|
CA6090396 rs750832113 |
214 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs1274229131 CA381221024 |
214 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
CA6090397 rs377180594 |
215 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1489723771 CA381221030 |
215 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA381221042 rs1429259734 |
217 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs990076607 CA381221058 |
219 | F>L | No |
ClinGen TOPMed gnomAD |
|
|
CA6090399 rs373496992 |
220 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs865869532 CA223910100 |
220 | R>S | No |
ClinGen Ensembl |
|
|
rs1439836494 CA381221081 |
223 | Q>R | No |
ClinGen TOPMed |
|
|
CA381221093 rs1169637831 |
225 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1169637831 CA381221095 |
225 | D>Y | No |
ClinGen gnomAD |
|
|
CA381221113 rs1251832264 |
227 | Q>R | No |
ClinGen TOPMed |
|
|
rs1291780669 CA381221127 |
229 | I>T | No |
ClinGen gnomAD |
|
|
CA381221141 rs1279664246 |
231 | A>V | No |
ClinGen gnomAD |
|
|
CA381221143 rs867834370 |
232 | R>C | No |
ClinGen TOPMed |
|
|
rs867834370 CA223910119 |
232 | R>S | No |
ClinGen TOPMed |
|
|
rs201701443 CA6090402 |
233 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1294225927 CA381221156 |
234 | A>V | No |
ClinGen gnomAD |
|
|
rs1243240772 CA381221158 |
235 | Q>E | No |
ClinGen gnomAD |
|
|
rs1243240772 CA381221157 |
235 | Q>K | No |
ClinGen gnomAD |
|
|
CA381221171 rs1451808299 |
236 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1265423775 CA381221173 |
237 | L>M | No |
ClinGen gnomAD |
|
|
rs1486219553 CA381221180 |
238 | R>Q | No |
ClinGen gnomAD |
|
|
rs901085207 CA223910136 |
240 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA6090403 rs770562565 |
240 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs957319974 CA223910231 |
243 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1217990930 CA381221228 |
244 | G>C | No |
ClinGen TOPMed |
|
|
CA223910236 rs1011445952 |
245 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA6090422 rs777904590 |
245 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs745643658 CA6090423 |
246 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090424 rs769644606 |
248 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769644606 CA223910245 |
248 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381221251 rs1458098114 |
248 | A>V | No |
ClinGen gnomAD |
|
|
CA381221254 rs1397416441 |
249 | P>A | No |
ClinGen TOPMed |
|
|
rs775394069 CA6090425 |
249 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773946601 CA6090428 |
250 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749238510 CA6090426 |
250 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090427 rs749238510 |
250 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381221275 rs1398782705 |
252 | A>V | No |
ClinGen TOPMed |
|
|
CA223910279 rs981564945 |
253 | E>K | No |
ClinGen TOPMed |
|
|
CA223910283 rs767180580 |
254 | C>* | No |
ClinGen ExAC gnomAD |
|
|
rs1401467535 CA381221293 |
255 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
CA381221297 rs1590812858 |
256 | E>K | No |
ClinGen Ensembl |
|
|
rs1177746733 CA381221321 |
260 | A>S | No |
ClinGen gnomAD |
|
|
CA381221326 rs1467554367 |
261 | L>M | No |
ClinGen gnomAD |
|
|
rs536449046 CA6090432 |
263 | E>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA381221338 rs1376756054 |
263 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1456445130 CA381221344 |
264 | P>T | No |
ClinGen TOPMed |
|
|
CA6090434 rs372724187 |
266 | E>G | No |
ClinGen ESP ExAC gnomAD |
|
|
CA381221360 rs372724187 |
266 | E>V | No |
ClinGen ESP ExAC gnomAD |
|
|
CA223910298 rs958865366 |
267 | E>* | No |
ClinGen gnomAD |
|
|
CA381221364 rs958865366 |
267 | E>K | No |
ClinGen gnomAD |
|
|
rs958865366 CA381221363 |
267 | E>Q | No |
ClinGen gnomAD |
|
|
rs1417140334 CA381221367 |
267 | E>V | No |
ClinGen gnomAD |
|
|
CA381221385 rs1200261734 |
270 | E>* | No |
ClinGen TOPMed gnomAD |
|
|
CA381221383 rs1200261734 |
270 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA381221384 rs1200261734 |
270 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA381221398 rs1308028899 |
271 | E>D | No |
ClinGen TOPMed |
|
|
rs944823702 CA223910317 |
272 | F>Y | No |
ClinGen TOPMed |
|
|
rs755571206 CA6090435 |
273 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381221414 rs752798483 |
274 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1334028602 CA381221412 |
274 | A>S | No |
ClinGen TOPMed |
|
|
rs752798483 CA6090437 |
274 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA223910337 rs942296412 |
276 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs755847042 CA6090441 |
277 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA223910350 rs932505081 |
277 | R>H | No |
ClinGen TOPMed |
|
|
CA223910359 rs972705409 |
278 | G>D | No |
ClinGen TOPMed gnomAD |
|
|
CA6090442 rs779830576 |
278 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA381221439 rs749185476 |
279 | R>L | No |
ClinGen ExAC gnomAD |
|
|
CA6090443 rs749185476 |
279 | R>Q | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 279 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381221445 rs1356383893 |
281 | E>K | No |
ClinGen gnomAD |
|
|
rs768605472 CA6090445 |
285 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA381221493 rs1342556620 |
288 | E>K | No |
ClinGen gnomAD |
|
|
CA6090446 rs778767817 |
289 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs747667136 CA6090447 |
289 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA381221507 rs1178194564 |
290 | E>Q | No |
ClinGen TOPMed |
|
|
rs1292004163 CA381221523 |
292 | G>E | No |
ClinGen gnomAD |
|
|
CA6090450 rs760405227 |
295 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA6090451 rs544293367 |
296 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs777155033 CA6090452 |
297 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1191069778 CA381221554 |
298 | P>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1191069778 CA381221556 |
298 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA381221557 rs1473362977 |
299 | D>N | No |
ClinGen gnomAD |
|
|
rs918286942 CA223910432 |
300 | V>M | No |
ClinGen Ensembl |
|
|
CA381221582 rs1590812957 |
302 | E>V | No |
ClinGen Ensembl |
|
|
rs1398382914 CA381221599 |
305 | D>N | No |
ClinGen gnomAD |
|
|
CA223910440 rs929602012 |
306 | H>R | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 307 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753210905 CA6090456 |
307 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763074461 CA6090457 |
309 | S>I | No |
ClinGen ExAC gnomAD |
|
|
rs764095355 CA6090458 |
309 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs751715254 CA6090459 |
310 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1354103323 CA381221631 |
310 | G>S | No |
ClinGen gnomAD |
|
|
rs867887338 CA223910452 |
311 | F>L | No |
ClinGen gnomAD |
|
|
CA381221643 rs1355277415 |
312 | V>M | No |
ClinGen TOPMed |
|
|
CA6090460 rs557757524 |
313 | G>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA223910457 rs902263784 |
314 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
| TCGA novel | 314 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA223910460 rs760838571 |
315 | L>F | No |
ClinGen Ensembl |
|
|
CA6090462 rs202137528 |
317 | Q>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA381221680 CA6090463 rs754811730 |
318 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
COSM1509505 rs892953648 CA223910481 |
319 | A>V | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
|
CA381221690 rs1159857578 |
320 | A>P | No |
ClinGen gnomAD |
|
|
CA6090465 rs748044385 |
320 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771540063 CA6090466 |
321 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777176694 CA6090467 |
322 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1403128307 CA381221708 |
323 | Q>* | No |
ClinGen gnomAD |
|
|
rs1309960618 CA381221733 |
326 | F>L | No |
ClinGen gnomAD |
|
|
CA223910503 rs868156032 |
327 | A>V | No |
ClinGen gnomAD |
|
|
CA6090469 rs373776274 |
328 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6090472 rs770114661 |
329 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs375782577 CA6090473 |
330 | G>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs763374483 CA6090474 |
332 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs764195404 CA381221772 |
333 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764195404 CA6090475 |
333 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA223910526 rs371442252 |
334 | A>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA6090476 rs774439345 |
334 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA223910527 rs529522145 |
335 | E>K | No |
ClinGen 1000Genomes TOPMed gnomAD |
|
|
rs761933050 CA6090477 |
336 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1218130092 CA381221794 |
337 | L>P | No |
ClinGen TOPMed |
|
|
CA381221801 rs1273639217 |
338 | A>V | No |
ClinGen TOPMed |
|
|
rs1398491400 CA381221804 |
339 | A>T | No |
ClinGen TOPMed |
|
|
CA6090479 rs767698867 |
340 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381221810 rs1399780682 |
340 | F>V | No |
ClinGen gnomAD |
|
|
CA223910539 rs11548902 |
341 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA6090480 rs11548902 |
341 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA223910548 rs903204646 |
341 | A>V | No |
ClinGen gnomAD |
|
|
CA381221820 rs543247897 |
342 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6090481 rs543247897 |
342 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA381221819 rs1444494864 |
342 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA6090482 rs199798147 |
345 | G>A | No |
ClinGen ExAC gnomAD |
|
|
CA381221853 rs1234947917 |
347 | R>P | No |
ClinGen gnomAD |
|
|
CA381221860 rs1174287312 |
348 | Y>C | No |
ClinGen TOPMed |
|
|
CA381221870 rs1480709365 |
349 | F>L | No |
ClinGen TOPMed |
|
|
CA381221873 rs1323242383 |
350 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
rs1199624024 CA381221876 |
350 | A>V | No |
ClinGen gnomAD |
|
|
CA223910571 rs1035785156 |
351 | L>M | No |
ClinGen Ensembl |
|
|
CA6090485 rs777808525 |
352 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777808525 CA6090484 |
352 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1268137358 CA381221892 |
353 | E>D | No |
ClinGen gnomAD |
|
|
rs1195733997 CA381221885 |
353 | E>K | No |
ClinGen gnomAD |
|
|
CA6090487 rs780988341 |
354 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA6090486 rs766647509 |
354 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754097499 CA223910587 |
355 | R>G | No |
ClinGen Ensembl |
|
|
CA223910590 rs754097499 |
355 | R>W | No |
ClinGen Ensembl |
|
|
rs745519623 CA6090488 |
357 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1171054765 CA381221910 |
358 | Q>E | No |
ClinGen gnomAD |
|
|
rs1425516497 CA381221913 |
358 | Q>R | No |
ClinGen gnomAD |
|
|
rs1463996372 CA381221930 |
360 | Q>R | No |
ClinGen gnomAD |
|
|
rs1388053123 CA381221958 |
364 | D>E | No |
ClinGen gnomAD |
|
|
rs1440259920 CA381221951 |
364 | D>N | No |
ClinGen TOPMed |
|
|
rs749760885 CA6090491 |
365 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381221978 rs1324913650 |
368 | L>V | No |
ClinGen TOPMed |
|
|
CA381221982 rs1280411706 |
369 | V>M | No |
ClinGen gnomAD |
|
|
rs1316510985 CA381221989 |
370 | R>G | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 370 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381221988 rs1316510985 |
370 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA6090495 rs767647540 |
371 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs761865562 CA6090494 |
371 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1489486624 CA381222012 |
374 | R>C | No |
ClinGen gnomAD |
|
|
rs1208094920 CA381222013 |
374 | R>H | No |
ClinGen gnomAD |
|
|
rs1489486624 CA381222010 |
374 | R>S | No |
ClinGen gnomAD |
|
|
rs1590813107 CA381222017 |
375 | F>I | No |
ClinGen Ensembl |
|
|
CA381222039 rs1243550697 |
378 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1196204405 CA381222040 |
378 | R>H | No |
ClinGen gnomAD |
|
|
CA223910616 rs983414616 |
380 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA6090496 rs773369083 |
380 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs1357548754 CA381222059 |
382 | P>T | No |
ClinGen TOPMed |
|
|
CA6090497 rs760833936 |
383 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222073 rs1459403818 |
384 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA223910623 rs963525284 |
386 | L>V | No |
ClinGen TOPMed |
|
|
rs1364409815 CA381222093 |
388 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1400219397 CA381222098 |
389 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
CA381222097 rs1400219397 |
389 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA6090500 rs758264336 |
389 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs751614763 CA381222102 CA6090502 |
390 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222113 rs1313920973 |
392 | A>T | No |
ClinGen gnomAD |
|
|
rs1243261472 CA381222121 |
393 | D>N | No |
ClinGen gnomAD |
|
|
CA381222130 rs1170357525 |
394 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA6090503 rs756761339 |
394 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA381222136 rs1219046554 |
395 | A>V | No |
ClinGen gnomAD |
|
|
rs551487687 CA223910632 |
396 | T>M | No |
ClinGen 1000Genomes |
|
|
rs780863504 CA6090504 |
397 | E>D | No |
ClinGen ExAC |
|
|
CA381222156 rs1261356897 |
398 | I>M | No |
ClinGen gnomAD |
|
|
rs1485684405 CA381222159 |
399 | V>M | No |
ClinGen gnomAD |
|
|
rs1185669461 CA381222165 |
400 | E>* | No |
ClinGen gnomAD |
|
|
rs1257997108 CA381222173 |
401 | R>Q | No |
ClinGen TOPMed |
|
|
CA381222184 rs1256607966 |
403 | A>S | No |
ClinGen gnomAD |
|
|
COSM3398038 rs1425412470 CA381222185 |
403 | A>V | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs745475398 CA6090505 |
404 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA381222190 rs755751739 |
404 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090506 rs755751739 |
404 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222197 CA381222196 rs774831357 |
405 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749590732 CA6090508 |
405 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749590732 CA6090509 |
405 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222200 rs1286105060 |
406 | R>C | No |
ClinGen TOPMed |
|
|
rs374731060 CA6090512 |
406 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6090511 rs374731060 |
406 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA381222208 rs922059202 |
408 | G>C | No |
ClinGen TOPMed gnomAD |
|
|
rs922059202 CA223910658 |
408 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA381222210 rs1381880698 |
408 | G>V | No |
ClinGen gnomAD |
|
|
rs1337749990 CA381222218 |
409 | H>Q | No |
ClinGen gnomAD |
|
|
CA381222220 rs1315028908 |
410 | H>N | No |
ClinGen TOPMed gnomAD |
|
|
CA381222222 rs1315028908 |
410 | H>Y | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 414 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6090516 rs776971564 |
415 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs771038781 CA381222254 |
415 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1438603563 CA381222262 |
416 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
CA381222291 rs1242498086 |
421 | C>Y | No |
ClinGen gnomAD |
|
|
rs892988050 CA223911536 |
422 | L>P | No |
ClinGen gnomAD |
|
|
rs761863465 CA381222311 |
424 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1042069929 CA223911544 |
424 | D>N | No |
ClinGen TOPMed |
|
|
CA6090519 rs751485214 |
424 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs767094496 CA381222319 |
426 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA6090521 rs767094496 |
426 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs749867580 CA6090522 |
428 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs753590445 CA6090525 |
429 | L>M | No |
ClinGen ExAC gnomAD |
|
|
CA381222352 rs1565315612 |
432 | P>T | No |
ClinGen Ensembl |
|
|
rs1590813235 CA381222360 |
433 | R>C | No |
ClinGen Ensembl |
|
|
CA381222365 rs1315933233 COSM1194312 |
434 | V>M | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
rs772539666 CA6090529 |
437 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs778303315 CA6090530 |
439 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1201495000 CA381222410 |
441 | G>D | No |
ClinGen gnomAD |
|
|
CA6090531 rs747048701 |
441 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs771110751 CA6090532 |
443 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs771110751 CA381222419 |
443 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs1200525746 CA381222423 |
444 | E>K | No |
ClinGen gnomAD |
|
|
rs1230665065 CA381222437 |
445 | L>F | No |
ClinGen gnomAD |
|
|
CA381222451 rs1191383483 |
448 | N>D | No |
ClinGen gnomAD |
|
|
CA6090535 rs768521247 |
448 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1292807348 CA381222459 |
449 | V>E | No |
ClinGen TOPMed |
|
|
CA6090536 rs774317852 |
451 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090538 rs140186079 |
455 | S>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs750430648 CA6090539 |
456 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA6090541 rs201089305 |
457 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222509 rs1201993741 |
457 | I>V | No |
ClinGen gnomAD |
|
|
CA6090542 rs527307869 |
459 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA381222531 rs1475765988 |
460 | S>F | No |
ClinGen gnomAD |
|
|
rs1191106525 CA381222545 |
463 | A>T | No |
ClinGen TOPMed |
|
|
CA6090543 rs754660795 |
465 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381222577 rs1271453162 |
468 | T>A | No |
ClinGen TOPMed |
|
|
CA381222586 rs1284104629 |
469 | A>G | No |
ClinGen TOPMed |
|
|
rs1177797205 CA381222584 |
469 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1177797205 CA381222582 |
469 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1405788525 CA381222589 |
470 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA381222588 rs1405788525 |
470 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs753040548 CA6090545 |
470 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA381222611 rs1270846801 |
473 | S>A | No |
ClinGen gnomAD |
|
|
CA381222627 rs747556945 |
475 | S>C | No |
ClinGen ExAC |
|
|
CA6090549 rs747556945 |
475 | S>F | No |
ClinGen ExAC |
|
|
rs1247965201 CA381222636 |
477 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs563771562 CA223911705 |
481 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs563771562 CA6090553 |
481 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA6090552 COSM1676171 rs777607408 |
481 | R>W | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA223911922 rs977946774 |
482 | G>C | No |
ClinGen TOPMed |
|
|
CA381222702 rs1331391997 |
485 | C>R | No |
ClinGen TOPMed |
|
|
rs1392392786 CA381222721 |
487 | Q>R | No |
ClinGen TOPMed |
|
|
rs746823866 CA6090577 |
488 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs1355333328 CA381222735 |
489 | V>G | No |
ClinGen gnomAD |
|
|
rs1390461472 CA381222732 |
489 | V>I | No |
ClinGen TOPMed |
|
|
rs770883799 CA6090578 |
490 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs776609842 CA6090579 COSM1188296 |
492 | G>C | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1426757970 CA381222753 |
492 | G>V | No |
ClinGen TOPMed |
|
|
rs759045226 CA6090580 |
493 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs147241001 CA223911949 |
494 | I>M | No |
ClinGen ESP gnomAD |
|
|
rs764733321 COSM1676172 CA6090581 |
495 | V>M | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA6090582 rs775068256 |
496 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090584 rs372048283 |
498 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs762615661 CA6090583 |
498 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs751920230 CA6090585 |
500 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs1554993401 CA6090586 |
500 | S>C | No |
ClinGen Ensembl |
|
|
CA6090588 rs376718956 |
501 | M>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA223911997 rs914232860 |
501 | M>V | No |
ClinGen Ensembl |
|
|
rs553871458 CA6090589 |
502 | C>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA6090590 COSM2165075 rs140677028 |
504 | T>M | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA381222831 rs1337083474 |
505 | A>V | No |
ClinGen gnomAD |
|
|
CA381222851 rs1590813534 |
508 | F>C | No |
ClinGen Ensembl |
|
|
rs563134790 CA6090594 |
510 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA381222891 rs1461208233 |
514 | E>K | No |
ClinGen gnomAD |
|
|
CA6090596 rs779057832 |
515 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA381222910 rs1436205828 |
516 | G>E | No |
ClinGen gnomAD |
|
|
CA6090598 rs770701525 |
517 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1281792763 CA381222912 |
517 | G>R | No |
ClinGen TOPMed |
|
|
CA381222916 rs770701525 |
517 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1378380636 CA381222922 |
518 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1479140645 CA381222926 |
519 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA381222931 rs1178250787 |
520 | P>S | No |
ClinGen gnomAD |
|
|
rs1426946004 CA381222940 |
521 | P>L | No |
ClinGen gnomAD |
|
|
CA223912048 rs1036557217 |
522 | A>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 522 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA223912049 rs948707389 |
522 | A>V | No |
ClinGen Ensembl |
|
|
rs1477645065 CA381222971 |
527 | L>P | No |
ClinGen TOPMed |
|
|
rs372980301 CA6090604 |
529 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA6090605 rs768332104 |
529 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1338048717 CA381222983 |
530 | L>F | No |
ClinGen gnomAD |
|
|
rs1268160739 CA381222991 |
531 | C>Y | No |
ClinGen gnomAD |
|
|
CA6090608 rs762231844 |
534 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750900091 CA6090609 |
535 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA223912066 rs750900091 |
535 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750900091 CA6090610 |
535 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090612 rs142361493 |
536 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs142361493 CA6090611 |
536 | T>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs531960659 CA223912084 |
537 | A>S | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1374677773 CA381223028 |
537 | A>V | No |
ClinGen gnomAD |
|
|
rs1460418019 CA381223034 |
538 | T>S | No |
ClinGen gnomAD |
|
|
CA381223041 rs1284318955 |
539 | I>M | No |
ClinGen TOPMed |
|
|
CA223912089 rs199595884 |
539 | I>V | No |
ClinGen 1000Genomes gnomAD |
|
|
rs1434245127 CA381223057 |
542 | I>V | No |
ClinGen gnomAD |
|
|
rs1300966800 CA381223065 |
543 | L>F | No |
ClinGen gnomAD |
|
|
CA381223077 rs1325136641 |
545 | L>F | No |
ClinGen gnomAD |
|
|
CA6090619 rs780989797 |
547 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA223912108 rs773602855 |
549 | Q>* | No |
ClinGen Ensembl |
|
|
rs769689551 CA6090621 |
550 | F>C | No |
ClinGen ExAC |
|
|
rs1220509271 CA381223109 |
550 | F>V | No |
ClinGen gnomAD |
|
|
CA381223126 rs1186831757 |
552 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
CA6090623 rs748817880 |
553 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs1451101822 CA381223169 |
557 | P>T | No |
ClinGen gnomAD |
|
|
rs754450067 CA6090641 |
558 | V>E | No |
ClinGen ExAC |
|
|
rs139150785 CA6090642 |
559 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1225657037 CA381223187 |
560 | P>S | No |
ClinGen gnomAD |
|
| TCGA novel | 561 | V>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381223193 rs1316583305 |
561 | V>M | No |
ClinGen gnomAD |
|
|
CA381223198 rs1246748564 |
562 | S>G | No |
ClinGen TOPMed |
|
|
rs747378351 CA6090646 |
563 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1201772058 CA381223213 |
564 | L>P | No |
ClinGen gnomAD |
|
|
rs1241975776 CA381223228 |
566 | A>V | No |
ClinGen gnomAD |
|
|
CA6090648 rs141095389 |
567 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA381223233 rs1590813795 |
567 | E>G | No |
ClinGen Ensembl |
|
|
rs1178545703 CA381223229 |
567 | E>K | No |
ClinGen gnomAD |
|
|
CA381223240 rs1418161679 |
568 | A>V | No |
ClinGen gnomAD |
|
|
CA381223244 rs1431987286 |
569 | R>K | No |
ClinGen gnomAD |
|
|
rs752502023 CA6090649 |
571 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs765322623 CA6090650 |
571 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs763071521 CA6090652 |
572 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs146670601 CA6090655 |
573 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs146670601 CA6090656 |
573 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA6090654 rs144624856 |
573 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs375386887 CA6090658 |
574 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA6090657 rs753757252 |
574 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs148816548 CA6090659 |
580 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA381223321 rs1590813823 |
582 | V>G | No |
ClinGen Ensembl |
|
|
CA6090660 rs747602510 |
583 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA381223324 rs1230682142 |
583 | Q>R | No |
ClinGen gnomAD |
|
|
rs370861729 CA6090661 |
585 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs746675463 CA6090663 |
587 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA381223359 rs1199182772 |
589 | Q>* | No |
ClinGen gnomAD |
|
|
CA6090664 rs771374903 COSM930322 |
589 | Q>H | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs143500542 CA223912332 |
590 | M>L | No |
ClinGen ESP gnomAD |
|
|
CA6090665 rs776892803 |
591 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs1425524144 CA381223378 |
592 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA223912336 rs879429468 |
592 | R>H | No |
ClinGen gnomAD |
|
|
rs1347129192 CA381223381 |
593 | K>E | No |
ClinGen gnomAD |
|
|
rs191494770 CA381223395 |
594 | S>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs763016414 CA6090669 |
595 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs571448656 CA6090668 |
595 | V>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs571448656 CA6090667 |
595 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1216325980 CA381223413 |
597 | T>I | No |
ClinGen gnomAD |
|
|
CA381223416 rs1270256394 |
598 | R>C | No |
ClinGen gnomAD |
|
|
rs1306462526 CA381223419 |
598 | R>H | No |
ClinGen gnomAD |
|
|
CA223912371 rs534032173 |
599 | D>G | No |
ClinGen 1000Genomes |
|
|
CA6090671 rs774498013 |
599 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1489730847 CA381223434 |
600 | W>C | No |
ClinGen gnomAD |
|
|
rs200709758 CA223912376 |
601 | L>I | No |
ClinGen TOPMed gnomAD |
|
|
rs960545712 CA223912380 |
603 | T>I | No |
ClinGen TOPMed |
|
|
rs1243064041 CA381223448 |
603 | T>P | No |
ClinGen gnomAD |
|
|
CA381223456 rs1342894246 |
604 | L>P | No |
ClinGen TOPMed |
|
|
CA381223465 rs1185349714 |
605 | E>D | No |
ClinGen gnomAD |
|
|
rs1157616504 CA381223470 |
606 | P>L | No |
ClinGen TOPMed |
|
|
CA381223467 rs1418870280 |
606 | P>S | No |
ClinGen gnomAD |
|
|
rs753543955 CA6090674 |
607 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766154023 CA6090673 |
607 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs77671913 CA223912432 |
611 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs77671913 CA6090675 |
611 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1268381440 CA381223498 |
612 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1361220276 CA381223515 |
614 | K>* | No |
ClinGen gnomAD |
|
|
rs1316547460 CA381223524 |
615 | R>P | No |
ClinGen TOPMed gnomAD |
|
|
CA381223522 rs1316547460 |
615 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA6090677 rs201155694 |
615 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1590813911 CA381223529 |
616 | V>G | No |
ClinGen Ensembl |
|
|
rs757928017 CA6090678 |
616 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs777451274 CA6090679 |
617 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA381223534 rs777451274 |
617 | V>G | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 618 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381223545 rs1285381748 |
619 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA381223557 rs1590813924 |
621 | T>P | No |
ClinGen Ensembl |
|
|
rs1565317115 CA381223564 |
622 | A>D | No |
ClinGen Ensembl |
|
|
CA223912464 rs543294 |
622 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs543294 CA6090682 |
622 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA381223568 rs1462172863 |
623 | I>V | No |
ClinGen gnomAD |
|
|
rs1446043077 CA381223576 |
624 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA381223574 rs1446043077 |
624 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA6090685 rs780357113 |
625 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA6090712 rs748211136 |
629 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA381223623 rs1345986114 |
629 | L>P | No |
ClinGen TOPMed |
|
| TCGA novel | 632 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1338770736 CA381223658 |
634 | G>V | No |
ClinGen gnomAD |
|
|
rs115159943 CA6090713 |
635 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA6090714 rs773252794 |
636 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381223666 rs773252794 |
636 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 636 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381223669 rs1271265366 |
636 | R>L | No |
ClinGen gnomAD |
|
|
rs769440098 CA6090716 |
637 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA6090717 rs775395423 |
639 | Q>L | No |
ClinGen ExAC gnomAD |
|
|
CA6090718 rs762891136 |
644 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1451801162 CA381223727 |
645 | K>Q | No |
ClinGen TOPMed |
|
|
CA381223736 rs1407092714 |
646 | R>G | No |
ClinGen gnomAD |
|
|
rs1330958959 CA381223744 |
647 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
CA381223753 rs1338457806 |
648 | F>C | No |
ClinGen TOPMed |
|
|
CA381223755 rs1228872948 |
648 | F>L | No |
ClinGen gnomAD |
|
|
CA381223752 rs1338457806 |
648 | F>S | No |
ClinGen TOPMed |
|
|
CA6090721 rs751614812 |
650 | V>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381223764 rs1253140518 |
650 | V>L | No |
ClinGen gnomAD |
|
|
CA223912964 rs147082259 |
652 | S>G | No |
ClinGen ESP |
|
|
rs1165783134 CA381223782 |
653 | S>R | No |
ClinGen TOPMed |
|
|
CA6090722 rs761159690 |
654 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA223912966 rs962300354 |
654 | S>P | No |
ClinGen TOPMed |
|
| TCGA novel | 655 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 655 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs767066091 CA6090723 |
656 | Q>* | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 656 | Q>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA381223819 rs1590814367 |
658 | G>V | No |
ClinGen Ensembl |
|
|
rs1197338811 CA381223822 |
659 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1490908739 CA381223824 |
659 | R>H | No |
ClinGen gnomAD |
|
|
CA6090724 rs749994347 |
660 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs755820870 CA6090725 |
661 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA381223843 rs1432521590 |
662 | P>L | No |
ClinGen gnomAD |
|
|
CA381223839 rs1390231762 |
662 | P>S | No |
ClinGen TOPMed |
|
|
rs200696699 CA6090727 |
663 | S>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA381223844 rs1590814393 COSM930323 |
663 | S>R | endometrium [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA6090729 rs779385045 |
664 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs755391388 CA6090728 |
664 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA381223867 rs1365747246 |
666 | P>R | No |
ClinGen gnomAD |
|
| TCGA novel | 667 | S>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA6090747 rs755280975 |
669 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372760329 CA6090748 |
669 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs372760329 CA6090749 |
669 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA223913033 rs755280975 |
669 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs541578769 CA6090750 |
670 | M>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 672 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1337465491 CA381223918 |
672 | T>I | No |
ClinGen gnomAD |
|
|
rs1312230270 CA381223963 |
679 | Q>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1004813594 CA223913052 |
679 | Q>R | No |
ClinGen Ensembl |
|
|
CA6090753 rs757481687 |
685 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs138579763 CA6090754 |
690 | S>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1462301962 CA381224059 |
693 | E>Q | No |
ClinGen gnomAD |
|
|
CA381224071 rs1179640983 |
694 | F>C | No |
ClinGen gnomAD |
|
|
CA6090757 rs774233371 |
695 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1473353947 CA381224076 |
695 | N>Y | No |
ClinGen TOPMed |
|
|
rs747933664 CA6090758 |
696 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs773919338 CA6090811 |
697 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381224275 rs1162428142 |
698 | S>L | No |
ClinGen gnomAD |
|
|
CA381224274 rs1162428142 |
698 | S>W | No |
ClinGen gnomAD |
|
|
rs866044625 CA223913399 |
702 | G>D | No |
ClinGen Ensembl |
|
|
CA381224306 rs1156902049 |
703 | I>L | No |
ClinGen TOPMed gnomAD |
|
|
CA381224315 rs1469820534 |
704 | I>V | No |
ClinGen gnomAD |
|
|
rs1391117699 CA381224324 |
705 | K>R | No |
ClinGen TOPMed |
|
|
rs897611230 CA223913410 |
706 | I>M | No |
ClinGen TOPMed |
|
|
CA6090814 rs766380581 |
711 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA6090816 rs754053789 |
713 | E>A | No |
ClinGen ExAC gnomAD |
|
|
CA381224376 rs377108289 |
713 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs767664796 CA6090815 |
714 | C>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1590814963 CA381224384 |
714 | C>W | No |
ClinGen Ensembl |
|
|
CA223913430 rs890407037 |
715 | V>M | No |
ClinGen TOPMed |
|
|
rs1324911574 COSM1238334 CA381224390 |
716 | R>W | oesophagus [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs751346711 CA6090819 |
718 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381224402 rs1442045175 |
718 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs1233210440 CA381224410 |
719 | T>I | No |
ClinGen gnomAD |
|
|
rs1590814980 CA381224405 |
719 | T>P | No |
ClinGen Ensembl |
|
|
CA6090821 rs781041245 |
720 | F>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA223913435 rs1017320178 |
720 | F>L | No |
ClinGen TOPMed |
|
|
CA6090822 rs745820333 |
721 | G>W | No |
ClinGen ExAC gnomAD |
|
|
CA6090823 rs755603803 |
722 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA6090824 rs779459567 |
722 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA381224424 rs779459567 |
722 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs748868923 CA6090825 |
723 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA381224439 rs371792750 |
725 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1565319279 CA381224455 |
727 | Q>P | No |
ClinGen Ensembl |
|
|
CA223913447 rs144112052 |
728 | V>L | No |
ClinGen ESP gnomAD |
|
|
rs773794586 CA6090830 |
731 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381224517 rs1590815019 |
736 | Q>* | No |
ClinGen Ensembl |
|
|
rs147317726 CA6090832 |
741 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA223913469 rs940443049 |
746 | E>D | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 746 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs539373179 CA6090835 |
748 | L>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA223913478 rs751397953 |
749 | V>M | No |
ClinGen Ensembl |
|
|
CA381224634 rs1427496157 |
754 | D>N | No |
ClinGen gnomAD |
|
|
CA381224648 rs1565319416 |
755 | E>D | No |
ClinGen Ensembl |
|
|
rs780087985 CA6090841 |
757 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1590815086 CA381224673 |
760 | A>T | No |
ClinGen Ensembl |
|
|
rs1565319452 CA381224692 |
763 | R>C | No |
ClinGen Ensembl |
|
|
rs1228168893 CA381224695 |
763 | R>L | No |
ClinGen gnomAD |
|
|
CA381224699 rs1299927659 |
764 | C>Y | No |
ClinGen gnomAD |
|
|
CA381224718 rs1340300647 |
767 | P>S | No |
ClinGen gnomAD |
|
|
CA223913488 rs901666528 |
768 | V>M | No |
ClinGen gnomAD |
|
|
CA381224736 rs1488707935 |
770 | M>V | No |
ClinGen gnomAD |
|
|
rs1388531106 CA381224762 |
773 | S>T | No |
ClinGen TOPMed |
|
|
CA6090845 rs747813174 |
779 | C>S | No |
ClinGen ExAC gnomAD |
|
|
CA6090846 rs772513892 |
780 | E>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA381224815 rs1213898024 |
781 | R>C | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 783 | G>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
1 associated diseases with Q9UID3
[MIM: 618606]: Pontocerebellar hypoplasia 13 (PCH13)
A form of pontocerebellar hypoplasia, a disorder characterized by structural defects of the pons and cerebellum, evident upon brain imaging. PCH13 is an autosomal recessive form characterized by delayed psychomotor development, absent speech, severe intellectual disability and postnatal microcephaly, with brain malformations consisting of cerebellar atrophy and hypoplastic corpus callosum. Additional features, including seizures and visual impairment, are variable. {ECO:0000269|PubMed:30624672, ECO:0000269|PubMed:31207318}. Note=The disease may be caused by variants affecting the gene represented in this entry.
Without disease ID
- A form of pontocerebellar hypoplasia, a disorder characterized by structural defects of the pons and cerebellum, evident upon brain imaging. PCH13 is an autosomal recessive form characterized by delayed psychomotor development, absent speech, severe intellectual disability and postnatal microcephaly, with brain malformations consisting of cerebellar atrophy and hypoplastic corpus callosum. Additional features, including seizures and visual impairment, are variable. {ECO:0000269|PubMed:30624672, ECO:0000269|PubMed:31207318}. Note=The disease may be caused by variants affecting the gene represented in this entry.
1 regional properties for Q9UID3
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Exocyst complex component EXOC2/Sec5, N-terminal domain | 64 - 288 | IPR039481 |
Functions
10 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| EARP complex | A quatrefoil tethering complex required for endocytic recycling. |
| GARP complex | A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| recycling endosome | An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane. |
| trans-Golgi network membrane | The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network. |
No GO annotations of molecular function
| Name | Definition |
|---|---|
| No GO annotations for molecular function |
9 GO annotations of biological process
| Name | Definition |
|---|---|
| autophagy | The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. |
| brain morphogenesis | The process in which the anatomical structures of the brain are generated and organized. The brain is one of the two components of the central nervous system and is the center of thought and emotion. It is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.). |
| endocytic recycling | The directed movement of membrane-bounded vesicles from endosomes back to the plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins. |
| Golgi organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. |
| Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
| lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. |
| lysosomal transport | The directed movement of substances into, out of or within a lysosome. |
| protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| retrograde transport, endosome to Golgi | The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| A6QQ47 | VPS51 | Vacuolar protein sorting-associated protein 51 homolog | Bos taurus (Bovine) | PR |
| Q3UVL4 | Vps51 | Vacuolar protein sorting-associated protein 51 homolog | Mus musculus (Mouse) | PR |
| Q4V9Y0 | vps51 | Vacuolar protein sorting-associated protein 51 homolog | Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) | PR |
| Q155U0 | vps51 | Vacuolar protein sorting-associated protein 51 homolog | Danio rerio (Zebrafish) (Brachydanio rerio) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAAAAAAGPS | PGSGPGDSPE | GPEGEAPERR | RKAHGMLKLY | YGLSEGEAAG | RPAGPDPLDP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TDLNGAHFDP | EVYLDKLRRE | CPLAQLMDSE | TDMVRQIRAL | DSDMQTLVYE | NYNKFISATD |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TIRKMKNDFR | KMEDEMDRLA | TNMAVITDFS | ARISATLQDR | HERITKLAGV | HALLRKLQFL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| FELPSRLTKC | VELGAYGQAV | RYQGRAQAVL | QQYQHLPSFR | AIQDDCQVIT | ARLAQQLRQR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| FREGGSGAPE | QAECVELLLA | LGEPAEELCE | EFLAHARGRL | EKELRNLEAE | LGPSPPAPDV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LEFTDHGGSG | FVGGLCQVAA | AYQELFAAQG | PAGAEKLAAF | ARQLGSRYFA | LVERRLAQEQ |
| 370 | 380 | 390 | 400 | 410 | 420 |
| GGGDNSLLVR | ALDRFHRRLR | APGALLAAAG | LADAATEIVE | RVARERLGHH | LQGLRAAFLG |
| 430 | 440 | 450 | 460 | 470 | 480 |
| CLTDVRQALA | APRVAGKEGP | GLAELLANVA | SSILSHIKAS | LAAVHLFTAK | EVSFSNKPYF |
| 490 | 500 | 510 | 520 | 530 | 540 |
| RGEFCSQGVR | EGLIVGFVHS | MCQTAQSFCD | SPGEKGGATP | PALLLLLSRL | CLDYETATIS |
| 550 | 560 | 570 | 580 | 590 | 600 |
| YILTLTDEQF | LVQDQFPVTP | VSTLCAEARE | TARRLLTHYV | KVQGLVISQM | LRKSVETRDW |
| 610 | 620 | 630 | 640 | 650 | 660 |
| LSTLEPRNVR | AVMKRVVEDT | TAIDVQVGLL | YEEGVRKAQS | SDSSKRTFSV | YSSSRQQGRY |
| 670 | 680 | 690 | 700 | 710 | 720 |
| APSYTPSAPM | DTNLLSNIQK | LFSERIDVFS | PVEFNKVSVL | TGIIKISLKT | LLECVRLRTF |
| 730 | 740 | 750 | 760 | 770 | 780 |
| GRFGLQQVQV | DCHFLQLYLW | RFVADEELVH | LLLDEVVASA | ALRCPDPVPM | EPSVVEVICE |
| RG |