Q9SSN0
PR
Gene name |
At1g72960 (F3N23.16) |
Protein name |
Protein ROOT HAIR DEFECTIVE 3 homolog 1 |
Names |
Protein SEY1 homolog 2 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G72960 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SSN0
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SSN0-F1 | Predicted | AlphaFoldDB |
73 variants for Q9SSN0
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_27446663_C_T | 24 | S>F | No | 1000Genomes | |
| ENSVATH05135053 | 30 | I>T | No | 1000Genomes | |
| ENSVATH13799738 | 36 | A>V | No | 1000Genomes | |
| tmp_1_27446906_C_A | 73 | F>L | No | 1000Genomes | |
| tmp_1_27447031_G_A | 90 | G>S | No | 1000Genomes | |
| ENSVATH00140440 | 93 | P>T | No | 1000Genomes | |
| tmp_1_27447193_G_A | 112 | D>N | No | 1000Genomes | |
| tmp_1_27447572_A_G | 175 | K>R | No | 1000Genomes | |
| tmp_1_27447823_C_T | 199 | P>S | No | 1000Genomes | |
| ENSVATH01528635 | 202 | E>K | No | 1000Genomes | |
| ENSVATH01528636 | 202 | E>V | No | 1000Genomes | |
| tmp_1_27447961_A_C | 216 | E>A | No | 1000Genomes | |
| ENSVATH01528640 | 228 | E>D | No | 1000Genomes | |
| tmp_1_27448148_C_G | 243 | H>D | No | 1000Genomes | |
| tmp_1_27448161_C_T | 247 | P>L | No | 1000Genomes | |
| ENSVATH00140447 | 250 | L>F | No | 1000Genomes | |
| ENSVATH00140448 | 273 | V>A | No | 1000Genomes | |
| tmp_1_27448256_G_T | 279 | D>Y | No | 1000Genomes | |
| ENSVATH05135078 | 304 | H>Y | No | 1000Genomes | |
| ENSVATH05135079 | 313 | K>Q | No | 1000Genomes | |
| tmp_1_27448766_G_A | 343 | G>R | No | 1000Genomes | |
| ENSVATH14474643 | 354 | S>Y | No | 1000Genomes | |
| ENSVATH05135082 | 355 | S>L | No | 1000Genomes | |
| ENSVATH05135084 | 365 | L>F | No | 1000Genomes | |
| ENSVATH13799752 | 370 | P>T | No | 1000Genomes | |
| ENSVATH01528656 | 383 | I>M | No | 1000Genomes | |
| ENSVATH05135089 | 424 | I>T | No | 1000Genomes | |
| tmp_1_27449128_T_C | 425 | I>T | No | 1000Genomes | |
| tmp_1_27449149_C_T | 432 | T>I | No | 1000Genomes | |
| tmp_1_27449152_C_G | 433 | S>* | No | 1000Genomes | |
| ENSVATH00140452 | 443 | I>M | No | 1000Genomes | |
| ENSVATH13799754 | 449 | S>A | No | 1000Genomes | |
| tmp_1_27449224_A_T | 457 | E>V | No | 1000Genomes | |
| tmp_1_27449343_G_T | 474 | V>L | No | 1000Genomes | |
| ENSVATH00140453 | 475 | E>G | No | 1000Genomes | |
| ENSVATH00140453 | 475 | E>V | No | 1000Genomes | |
| ENSVATH05135095 | 476 | A>V | No | 1000Genomes | |
| tmp_1_27449370_G_A | 483 | D>N | No | 1000Genomes | |
| ENSVATH00140454 | 487 | S>T | No | 1000Genomes | |
| tmp_1_27449407_G_A | 495 | R>H | No | 1000Genomes | |
| ENSVATH01528664 | 512 | D>G | No | 1000Genomes | |
| ENSVATH13799755 | 516 | E>K | No | 1000Genomes | |
| ENSVATH05135100 | 558 | H>L | No | 1000Genomes | |
| tmp_1_27449725_A_C | 570 | K>N | No | 1000Genomes | |
| ENSVATH05135101 | 578 | K>R | No | 1000Genomes | |
| tmp_1_27449846_C_T | 584 | S>F | No | 1000Genomes | |
| ENSVATH00140458 | 593 | V>A | No | 1000Genomes | |
| tmp_1_27450100_G_T | 642 | R>I | No | 1000Genomes | |
| tmp_1_27450103_C_A | 643 | T>N | No | 1000Genomes | |
| ENSVATH05135106 | 644 | L>M | No | 1000Genomes | |
| tmp_1_27450151_C_G | 659 | T>R | No | 1000Genomes | |
| ENSVATH05135107 | 661 | T>I | No | 1000Genomes | |
| tmp_1_27450282_C_A | 677 | R>S | No | 1000Genomes | |
| tmp_1_27450286_G_A | 678 | G>E | No | 1000Genomes | |
| tmp_1_27450285_G_A | 678 | G>R | No | 1000Genomes | |
| tmp_1_27450357_CT_TT,C | 702 | L>F | No | 1000Genomes | |
| tmp_1_27450462_T_A | 709 | L>H | No | 1000Genomes | |
| tmp_1_27450467_G_A | 711 | V>I | No | 1000Genomes | |
| ENSVATH05135118 | 715 | A>T | No | 1000Genomes | |
| ENSVATH01528674 | 720 | K>E | No | 1000Genomes | |
| tmp_1_27450511_A_C | 725 | Q>H | No | 1000Genomes | |
| tmp_1_27450534_G_A | 733 | R>H | No | 1000Genomes | |
| tmp_1_27450693_T_A | 740 | L>H | No | 1000Genomes | |
| ENSVATH05135120 | 742 | S>A | No | 1000Genomes | |
| ENSVATH05135122 | 755 | I>N | No | 1000Genomes | |
| ENSVATH05135121 | 755 | I>V | No | 1000Genomes | |
| ENSVATH01528675 | 764 | D>A | No | 1000Genomes | |
| ENSVATH05135124 | 765 | P>A | No | 1000Genomes | |
| ENSVATH13799762 | 770 | P>L | No | 1000Genomes | |
| ENSVATH13799763 | 774 | R>H | No | 1000Genomes | |
| ENSVATH13799764 | 785 | P>L | No | 1000Genomes | |
| ENSVATH14474658 | 789 | K>R | No | 1000Genomes | |
| ENSVATH05135127 | 795 | D>N | No | 1000Genomes |
No associated diseases with Q9SSN0
1 regional properties for Q9SSN0
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | F-box domain | 13 - 43 | IPR001810 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
| endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| GTP binding | Binding to GTP, guanosine triphosphate. |
| GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| endoplasmic reticulum membrane fusion | The joining of 2 or more lipid bilayer membranes that surround the endoplasmic reticulum. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q99287 | SEY1 | Protein SEY1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q0JLS6 | RHD3 | Protein ROOT HAIR DEFECTIVE 3 | Oryza sativa subsp japonica (Rice) | PR |
| P93042 | NAT4 | Protein ROOT HAIR DEFECTIVE 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDADKSEGCC | SVQLIDGDGI | YNVSRIDHFI | KDVKLADCGL | SYAVVSIMGP | QSSGKSTLLN |
| 70 | 80 | 90 | 100 | 110 | 120 |
| HLFGTNFMEM | DAFKGRSQTT | KGIWLARCAG | IEPCTLVMDL | EGTDGRERGE | DDTAFEKQSA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| LFALAISDIV | LINMWCHDIG | REQAANKPLL | KTVFQVMMRL | FSPRKTTMLF | VIRDKTRTPL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ENLEPVLRED | IQKIWDSVPK | PEAHKETPLS | DFFNVEVVAL | SSYEEKEEQF | KEQIASLRQR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| FMHSIAPGGL | AGDRRGVIPA | SGFAFSADQI | WRVIKENKDL | DLPAHKVMVA | TVRCEEIANE |
| 310 | 320 | 330 | 340 | 350 | 360 |
| KFAHFITNED | WRKLDEEVQA | GPVSNFGKRL | TTILGSCLSE | YDGEATFFDE | GVRSSKRQQL |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EEKLLQLVNP | AFQDVLGHIR | WGILEKFKAS | FDKALGIGEG | FSSASQDWFK | ACMTQFDEEC |
| 430 | 440 | 450 | 460 | 470 | 480 |
| AGAIIEQANW | DTSKVRDKLV | RDIEAHISSV | RTSKLSELTS | LYESKVHEAL | SEPVEALLDG |
| 490 | 500 | 510 | 520 | 530 | 540 |
| ANDETWSTVK | KLHRRETESA | VSGLSSALAG | FDMEEETRDR | MVKSLQDYAR | GVIETKAKEE |
| 550 | 560 | 570 | 580 | 590 | 600 |
| AVRVLMRMKE | RFGTIFSHDS | DSMPRVWTGK | EDLRAITKSA | RSASLKLLSV | MAVIRLGDEP |
| 610 | 620 | 630 | 640 | 650 | 660 |
| DNIEKTLTVA | LLDPTKNDTS | KKSITTSDPL | ASSTWDEVPS | SRTLITPVQC | KSIWRQFKTE |
| 670 | 680 | 690 | 700 | 710 | 720 |
| TEYTVTQAIS | AQEANRRGNN | WLPPPWAILA | LIVLGFNEFM | TLLRNPLYLG | VMFVAFLLAK |
| 730 | 740 | 750 | 760 | 770 | 780 |
| ALWTQLDIPG | EFRNGALPGL | ISISAKFVPT | VMNLIKNLAA | QGEDPPAANP | ENRRSSNNTS |
| 790 | |||||
| SSENPPDHKS | SSKED |