Q9SF55
Gene name |
At3g09480 (F11F8.5) |
Protein name |
Histone H2B.5 |
Names |
HTB7 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G09480 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SF55
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SF55-F1 | Predicted | AlphaFoldDB |
9 variants for Q9SF55
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH05798249 | 11 | E>D | No | 1000Genomes | |
| ENSVATH05798248 | 22 | K>E | No | 1000Genomes | |
| tmp_3_2915204_C_T | 23 | E>K | No | 1000Genomes | |
| ENSVATH00313546 | 43 | L>I | No | 1000Genomes | |
| tmp_3_2915079_C_T | 64 | M>I | No | 1000Genomes | |
| tmp_3_2915037_T_G | 78 | E>D | No | 1000Genomes | |
| ENSVATH02125662 | 89 | P>A | No | 1000Genomes | |
| tmp_3_2914964_C_T | 103 | V>M | No | 1000Genomes | |
| ENSVATH10566978 | 106 | G>A | No | 1000Genomes |
No associated diseases with Q9SF55
1 regional properties for Q9SF55
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Histone H2A/H2B/H3 | 6 - 102 | IPR007125 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| protein heterodimerization activity | Binding to a nonidentical protein to form a heterodimer. |
| structural constituent of chromatin | The action of a molecule that contributes to the structural integrity of chromatin. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
5 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q96A08 | H2BC1 | Histone H2B type 1-A | Homo sapiens (Human) | PR |
| P70696 | H2bc1 | Histone H2B type 1-A | Mus musculus (Mouse) | PR |
| Q9LZ45 | At5g02570 | Histone H2B.9 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O65821 | H2B-1 | Histone H2B.1 | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| O65818 | H2B-2 | Histone H2B.2 | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAPKAEKKPS | EKAPKADKKI | TKEGGSERKK | KTKKSTETYK | IYLFKVLKQV | HPDIGISGKA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| MGIMNSFIND | TFEKIALESS | RLARYNKKPT | ITSREIQTAV | RLVLPGELAK | HAVSEGTKAV |
| TKFTSS |