Q9LZ45
Gene name |
At5g02570 (T22P11.160) |
Protein name |
Histone H2B.9 |
Names |
HTB10 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G02570 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9LZ45
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9LZ45-F1 | Predicted | AlphaFoldDB |
10 variants for Q9LZ45
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_5_577137_C_T | 2 | A>T | No | 1000Genomes | |
| tmp_5_577116_G_T | 9 | P>T | No | 1000Genomes | |
| tmp_5_577095_G_A | 16 | P>S | No | 1000Genomes | |
| ENSVATH00602281 | 25 | E>D | No | 1000Genomes | |
| tmp_5_577062_C_T | 27 | G>R | No | 1000Genomes | |
| ENSVATH06909944 | 33 | K>E | No | 1000Genomes | |
| ENSVATH13885824 | 34 | K>N | No | 1000Genomes | |
| ENSVATH03010052 | 41 | S>N | No | 1000Genomes | |
| tmp_5_576953_G_T | 63 | S>Y | No | 1000Genomes | |
| ENSVATH03010049 | 80 | K>N | No | 1000Genomes |
No associated diseases with Q9LZ45
No regional properties for Q9LZ45
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q9LZ45 | |||
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
| nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| protein heterodimerization activity | Binding to a nonidentical protein to form a heterodimer. |
| structural constituent of chromatin | The action of a molecule that contributes to the structural integrity of chromatin. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
5 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q96A08 | H2BC1 | Histone H2B type 1-A | Homo sapiens (Human) | PR |
| P70696 | H2bc1 | Histone H2B type 1-A | Mus musculus (Mouse) | PR |
| Q9SF55 | At3g09480 | Histone H2B.5 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O65821 | H2B-1 | Histone H2B.1 | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| O65818 | H2B-2 | Histone H2B.2 | Solanum lycopersicum (Tomato) (Lycopersicon esculentum) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAPKAEKKPA | EKAPAPKAEK | KIAKEGGTSE | IVKKKKKTKK | STETYKIYIF | KVLKQVHPDI |
| 70 | 80 | 90 | 100 | 110 | 120 |
| GISGKAMGIM | NSFINDIFEK | LAQESSRLAR | YNKKPTITSR | EIQTAVRLVL | PGELAKHAVS |
| 130 | |||||
| EGTKAVTKFT | SS |