Q9M9S2
Gene name |
AT59 (At1g14420, F14L17.19) |
Protein name |
Probable pectate lyase 3 |
Names |
Pectate lyase A2 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G14420 |
EC number |
4.2.2.2: Acting on polysaccharides |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9M9S2
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9M9S2-F1 | Predicted | AlphaFoldDB |
49 variants for Q9M9S2
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH04575732 | 3 | A>T | No | 1000Genomes | |
| tmp_1_4933395_G_T | 4 | A>D | No | 1000Genomes | |
| ENSVATH11203108 | 21 | A>S | No | 1000Genomes | |
| tmp_1_4933300_T_C | 36 | S>G | No | 1000Genomes | |
| tmp_1_4933275_T_C | 44 | D>G | No | 1000Genomes | |
| ENSVATH01050211 | 72 | V>A | No | 1000Genomes | |
| tmp_1_4933068_G_C | 85 | L>V | No | 1000Genomes | |
| tmp_1_4933058_A_T | 88 | V>E | No | 1000Genomes | |
| ENSVATH04575730 | 89 | R>I | No | 1000Genomes | |
| tmp_1_4933042_T_A | 93 | K>N | No | 1000Genomes | |
| ENSVATH11202994 | 93 | K>Q | No | 1000Genomes | |
| ENSVATH04575729 | 103 | A>V | No | 1000Genomes | |
| ENSVATH04575728 | 104 | Y>C | No | 1000Genomes | |
| ENSVATH04575727 | 106 | P>L | No | 1000Genomes | |
| tmp_1_4932994_G_T | 109 | N>K | No | 1000Genomes | |
| tmp_1_4932988_C_G | 111 | W>C | No | 1000Genomes | |
| ENSVATH11202993 | 127 | C>R | No | 1000Genomes | |
| tmp_1_4932927_C_A | 132 | G>C | No | 1000Genomes | |
| tmp_1_4932896_G_T | 142 | P>Q | No | 1000Genomes | |
| tmp_1_4932891_A_T | 144 | Y>N | No | 1000Genomes | |
| tmp_1_4932846_G_A | 159 | P>S | No | 1000Genomes | |
| tmp_1_4932731_T_G | 197 | D>A | No | 1000Genomes | |
| tmp_1_4932732_C_A | 197 | D>Y | No | 1000Genomes | |
| tmp_1_4932716_C_G | 202 | R>T | No | 1000Genomes | |
| ENSVATH04575723 | 223 | N>Y | No | 1000Genomes | |
| tmp_1_4932638_T_C | 228 | H>R | No | 1000Genomes | |
| ENSVATH13895830 | 232 | G>R | No | 1000Genomes | |
| tmp_1_4932617_C_T | 235 | G>E | No | 1000Genomes | |
| ENSVATH00023139 | 258 | F>I | No | 1000Genomes | |
| ENSVATH11202992 | 265 | I>T | No | 1000Genomes | |
| tmp_1_4932528_T_C | 265 | I>V | No | 1000Genomes | |
| tmp_1_4932321_C_T | 301 | M>I | No | 1000Genomes | |
| tmp_1_4932290_C_T | 312 | D>N | No | 1000Genomes | |
| tmp_1_4932277_T_G | 316 | Q>P | No | 1000Genomes | |
| ENSVATH11202989 | 327 | R>Q | No | 1000Genomes | |
| ENSVATH01050210 | 342 | V>M | No | 1000Genomes | |
| tmp_1_4932163_G_A | 354 | A>V | No | 1000Genomes | |
| ENSVATH11202988 | 389 | Y>F | No | 1000Genomes | |
| ENSVATH04575722 | 390 | G>R | No | 1000Genomes | |
| ENSVATH11202987 | 394 | S>Y | No | 1000Genomes | |
| ENSVATH04575721 | 409 | Y>S | No | 1000Genomes | |
| tmp_1_4931995_A_G | 410 | F>S | No | 1000Genomes | |
| ENSVATH01050209 | 420 | S>R | No | 1000Genomes | |
| ENSVATH04575720 | 420 | S>T | No | 1000Genomes | |
| ENSVATH04575719 | 437 | P>R | No | 1000Genomes | |
| tmp_1_4931903_C_T | 441 | V>I | No | 1000Genomes | |
| ENSVATH11202884 | 445 | T>I | No | 1000Genomes | |
| tmp_1_4931886_CATGGTA_TATGGTA,C | 446 | M>I | No | 1000Genomes | |
| ENSVATH00023136 | 452 | G>R | No | 1000Genomes |
No associated diseases with Q9M9S2
No regional properties for Q9M9S2
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q9M9S2 | |||
Functions
| Description | ||
|---|---|---|
| EC Number | 4.2.2.2 | Acting on polysaccharides |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| metal ion binding | Binding to a metal ion. |
| pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| pectin catabolic process | The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. |
| plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| O64510 | At2g02720 | Probable pectate lyase 6 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LRM5 | At3g24230 | Probable pectate lyase 9 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q944R1 | At4g13710 | Probable pectate lyase 15 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAAAFLNLGG | YVFVFFSSFL | AIVAPQVRGN | VAVFDSYWTQ | RQSDALKQTI | GSYDPHPLNV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TNHFNYHVNI | AVDASESRND | TRRELTQVRS | GRKTHKSSGK | CLAYNPIDNC | WRCDRNWANN |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RKKLADCVLG | FGRRTTGGKD | GPIYVVKDAS | DNDLINPKPG | TLRHAVTRDG | PLWIIFARSM |
| 190 | 200 | 210 | 220 | 230 | 240 |
| IIKLQQELMI | TSDKTIDGRG | ARVYIMEGAG | LTLQFVNNVI | IHNIYVKHIV | PGNGGLIRDS |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EAHIGLRTKS | DGDGISLFGA | TNIWIDHVSM | TRCADGMIDA | IDGSTAVTIS | NSHFTDHQEV |
| 310 | 320 | 330 | 340 | 350 | 360 |
| MLFGARDEHV | IDKKMQITVA | FNHFGKRLEQ | RMPRCRYGTI | HVVNNDYTHW | EMYAIGGNMN |
| 370 | 380 | 390 | 400 | 410 | 420 |
| PTIISQGNRF | IAPPNEEAKQ | ITKREYTPYG | EWKSWNWQSE | GDYFLNGAYF | VQSGKANAWS |
| 430 | 440 | 450 | |||
| SKPKTPLPNK | FTIRPKPGTM | VRKLTMDAGV | LGCKLGEAC |