Q944R1
Gene name |
At4g13710 (F18A5.100) |
Protein name |
Probable pectate lyase 15 |
Names |
Pectate lyase A11 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT4G13710 |
EC number |
4.2.2.2: Acting on polysaccharides |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q944R1
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q944R1-F1 | Predicted | AlphaFoldDB |
41 variants for Q944R1
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_4_7962559_T_G | 4 | S>A | No | 1000Genomes | |
| ENSVATH00500170 | 5 | S>T | No | 1000Genomes | |
| tmp_4_7962586_G_C | 13 | V>L | No | 1000Genomes | |
| ENSVATH06651828 | 15 | V>L | No | 1000Genomes | |
| ENSVATH14176776 | 16 | L>F | No | 1000Genomes | |
| tmp_4_7962598_G_A | 17 | V>I | No | 1000Genomes | |
| ENSVATH11667784 | 27 | R>P | No | 1000Genomes | |
| tmp_4_7962628_C_T | 27 | R>W | No | 1000Genomes | |
| tmp_4_7962953_C_G | 37 | L>V | No | 1000Genomes | |
| ENSVATH06651844 | 40 | E>K | No | 1000Genomes | |
| tmp_4_7962993_T_A | 50 | M>K | No | 1000Genomes | |
| ENSVATH06651845 | 50 | M>V | No | 1000Genomes | |
| ENSVATH02819951 | 51 | A>S | No | 1000Genomes | |
| ENSVATH02819951 | 51 | A>T | No | 1000Genomes | |
| tmp_4_7962998_G_A | 52 | A>T | No | 1000Genomes | |
| ENSVATH00500177 | 62 | Q>E | No | 1000Genomes | |
| tmp_4_7963247_C_T | 72 | T>I | No | 1000Genomes | |
| ENSVATH02819975 | 92 | V>I | No | 1000Genomes | |
| ENSVATH11667960 | 95 | E>K | No | 1000Genomes | |
| tmp_4_7963797_G_T | 97 | A>S | No | 1000Genomes | |
| ENSVATH06651873 | 97 | A>V | No | 1000Genomes | |
| ENSVATH11667961 | 98 | K>T | No | 1000Genomes | |
| ENSVATH02819976 | 99 | L>I | No | 1000Genomes | |
| tmp_4_7964659_A_T | 107 | R>W | No | 1000Genomes | |
| tmp_4_7964663_C_A | 108 | T>K | No | 1000Genomes | |
| tmp_4_7964676_G_T | 112 | K>N | No | 1000Genomes | |
| ENSVATH11668072 | 132 | R>S | No | 1000Genomes | |
| ENSVATH11668073 | 143 | D>N | No | 1000Genomes | |
| ENSVATH02820002 | 152 | A>S | No | 1000Genomes | |
| ENSVATH14176857 | 153 | I>S | No | 1000Genomes | |
| tmp_4_7964857_A_G | 173 | N>D | No | 1000Genomes | |
| ENSVATH06651899 | 209 | S>N | No | 1000Genomes | |
| ENSVATH00500195 | 215 | A>G | No | 1000Genomes | |
| tmp_4_7965093_T_G | 251 | N>K | No | 1000Genomes | |
| ENSVATH11668115 | 259 | S>T | No | 1000Genomes | |
| tmp_4_7965138_G_A | 266 | M>I | No | 1000Genomes | |
| tmp_4_7965205_C_A | 289 | H>N | No | 1000Genomes | |
| tmp_4_7965454_A_T | 343 | E>V | No | 1000Genomes | |
| ENSVATH11668122 | 346 | V>I | No | 1000Genomes | |
| tmp_4_7965803_G_A | 402 | V>I | No | 1000Genomes | |
| ENSVATH02820018 | 404 | T>I | No | 1000Genomes |
No associated diseases with Q944R1
1 regional properties for Q944R1
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Pectate lyase | 196 - 393 | IPR002022 |
Functions
| Description | ||
|---|---|---|
| EC Number | 4.2.2.2 | Acting on polysaccharides |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| metal ion binding | Binding to a metal ion. |
| pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| pectin catabolic process | The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9LRM5 | At3g24230 | Probable pectate lyase 9 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9M9S2 | AT59 | Probable pectate lyase 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O64510 | At2g02720 | Probable pectate lyase 6 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MASSSQKLIS | VCVAVLVVLA | LTAMIFRNSE | ISLSRKLKTE | VIQSSNSSTM | AAIRKLKTEE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| FQSLNSSTMA | ATRLDGEPQQ | QQHAVADDPD | MVADEVAKLV | QMSEQNRTAR | RKLGFFSCGT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GNPIDDCWRC | DRNWHKNRKR | LADCGIGFGR | NAIGGRDGRF | YIVTDPTDED | VVNPKPGTLR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| HAVIQEEPLW | IVFKRDMVIE | LKQELIMNSF | KTIDARGSNV | HIANGACITI | QFITNVIIHG |
| 250 | 260 | 270 | 280 | 290 | 300 |
| LHIHDCKPTG | NAMVRSSPSH | FGWRTMADGD | AVSIFGSSHI | WIDHNSLSHC | ADGLVDAVMG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| STAITVSNNH | FTHHNEVMLL | GHSDSYTKDK | LMQVTIAYNH | FGEGLVQRMP | RCRHGYFHVV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| NNDYTHWEMY | AIGGSAEPTI | NSQGNRYAAP | MDRFAKEVTK | RVETDASEWK | KWNWRSEGDL |
| 430 | 440 | 450 | 460 | ||
| LLNGAFFRPS | GAGASASYGR | ASSLAAKPSS | MVDTITSTAG | ALGCRKGRPC |