Q9LRM5
Gene name |
At3g24230 (MUJ8.14) |
Protein name |
Probable pectate lyase 9 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G24230 |
EC number |
4.2.2.2: Acting on polysaccharides |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9LRM5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9LRM5-F1 | Predicted | AlphaFoldDB |
50 variants for Q9LRM5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH10930985 | 7 | K>N | No | 1000Genomes | |
| ENSVATH10930986 | 11 | A>S | No | 1000Genomes | |
| tmp_3_8774668_C_T | 11 | A>V | No | 1000Genomes | |
| tmp_3_8774728_A_G | 31 | N>S | No | 1000Genomes | |
| ENSVATH13990824 | 32 | N>I | No | 1000Genomes | |
| tmp_3_8774730_A_T | 32 | N>Y | No | 1000Genomes | |
| tmp_3_8775089_C_A | 42 | T>K | No | 1000Genomes | |
| tmp_3_8775105_C_A | 47 | S>R | No | 1000Genomes | |
| ENSVATH05902457 | 66 | H>Q | No | 1000Genomes | |
| ENSVATH00344922 | 70 | D>G | No | 1000Genomes | |
| ENSVATH00344923 | 75 | A>T | No | 1000Genomes | |
| ENSVATH05902458 | 81 | L>I | No | 1000Genomes | |
| ENSVATH05902466 | 85 | S>G | No | 1000Genomes | |
| tmp_3_8775994_C_T | 99 | S>L | No | 1000Genomes | |
| ENSVATH02191848 | 108 | D>A | No | 1000Genomes | |
| tmp_3_8776025_T_G | 109 | C>W | No | 1000Genomes | |
| ENSVATH10931055 | 126 | C>S | No | 1000Genomes | |
| ENSVATH02191849 | 151 | D>Y | No | 1000Genomes | |
| ENSVATH05902467 | 152 | D>N | No | 1000Genomes | |
| tmp_3_8776169_G_C | 157 | K>N | No | 1000Genomes | |
| ENSVATH02191850 | 158 | P>Q | No | 1000Genomes | |
| ENSVATH13990881 | 173 | I>V | No | 1000Genomes | |
| tmp_3_8776398_G_C | 234 | V>L | No | 1000Genomes | |
| ENSVATH10931056 | 236 | V>I | No | 1000Genomes | |
| ENSVATH10931056 | 236 | V>L | No | 1000Genomes | |
| ENSVATH10931057 | 243 | A>P | No | 1000Genomes | |
| tmp_3_8776459_T_A | 254 | I>N | No | 1000Genomes | |
| tmp_3_8776467_T_C | 257 | F>L | No | 1000Genomes | |
| ENSVATH10931058 | 260 | S>N | No | 1000Genomes | |
| tmp_3_8776527_G_T | 277 | V>F | No | 1000Genomes | |
| tmp_3_8776540_A_G | 281 | N>S | No | 1000Genomes | |
| tmp_3_8776692_C_T | 304 | H>Y | No | 1000Genomes | |
| ENSVATH05902471 | 310 | R>Q | No | 1000Genomes | |
| ENSVATH00344927 | 313 | M>I | No | 1000Genomes | |
| ENSVATH10931076 | 314 | M>I | No | 1000Genomes | |
| ENSVATH10931077 | 318 | V>I | No | 1000Genomes | |
| tmp_3_8776766_A_G | 328 | I>M | No | 1000Genomes | |
| tmp_3_8776904_A_T | 345 | D>V | No | 1000Genomes | |
| tmp_3_8776949_C_G | 360 | P>R | No | 1000Genomes | |
| ENSVATH10931080 | 368 | R>I | No | 1000Genomes | |
| tmp_3_8776981_G_T | 371 | A>S | No | 1000Genomes | |
| ENSVATH13990882 | 377 | A>V | No | 1000Genomes | |
| ENSVATH05902472 | 379 | E>G | No | 1000Genomes | |
| tmp_3_8777137_G_A | 397 | R>K | No | 1000Genomes | |
| ENSVATH05902475 | 400 | K>* | No | 1000Genomes | |
| ENSVATH00344930 | 429 | P>R | No | 1000Genomes | |
| ENSVATH05902477 | 438 | A>V | No | 1000Genomes | |
| ENSVATH02191856 | 449 | K>E | No | 1000Genomes | |
| tmp_3_8777296_C_A | 450 | P>H | No | 1000Genomes | |
| tmp_3_8777301_T_A | 452 | Y>N | No | 1000Genomes |
No associated diseases with Q9LRM5
5 regional properties for Q9LRM5
Functions
| Description | ||
|---|---|---|
| EC Number | 4.2.2.2 | Acting on polysaccharides |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| metal ion binding | Binding to a metal ion. |
| pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| pectin catabolic process | The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9M9S2 | AT59 | Probable pectate lyase 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O64510 | At2g02720 | Probable pectate lyase 6 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q944R1 | At4g13710 | Probable pectate lyase 15 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MATSSLKLTS | ACFVLLFIFV | GCVLTATNLR | NNEISRSRKL | KTEDSKSFNS | SPMTTRLDGV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| VELNEHAVTD | PDKVAHEVSN | LIHMSEQNIT | ARRKLGFFSC | GNGNLIDDCW | RCDRNWNKNR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KHLADCGMGF | GSKAFGGRNG | SYYVVTDHSD | DDVVNPKPGT | LRHAVIQVEP | LWIIFKRDMV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| IKLKQELIMN | SFKTIDARGA | NVHIANGACI | TIQNITNVIV | HGLHIHDCKR | TGNVTVRSSP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| SQAGFRGTAD | GDAINIFGSS | HIWIDHNSLS | NCTDGLVDVV | NGSTAITISN | NHFTHHDEVM |
| 310 | 320 | 330 | 340 | 350 | 360 |
| LLGHNDSYTR | DKMMQVTVAY | NHFGEGLIQR | MPRCRHGYFH | VVNNDYTHWK | MYAIGGSANP |
| 370 | 380 | 390 | 400 | 410 | 420 |
| TINSQGNRFA | APKNHSAKEV | TKRLDTKGNE | WMEWNWRSEK | DLLVNGAFFT | PSGEGASGDS |
| 430 | 440 | 450 | |||
| QTLSLPAKPA | SMVDAITASA | GALSCRRGKP | CY |