Q9C9C5
Gene name |
RPL6C (At1g74050, F2P9.8) |
Protein name |
60S ribosomal protein L6-3 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G74050 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9C9C5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9C9C5-F1 | Predicted | AlphaFoldDB |
20 variants for Q9C9C5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_27848669_T_A | 4 | K>N | No | 1000Genomes | |
| ENSVATH05142574 | 11 | N>S | No | 1000Genomes | |
| tmp_1_27848536_C_T | 49 | D>N | No | 1000Genomes | |
| ENSVATH05142569 | 58 | V>A | No | 1000Genomes | |
| ENSVATH13805551 | 59 | E>D | No | 1000Genomes | |
| ENSVATH01533814 | 60 | K>Q | No | 1000Genomes | |
| ENSVATH13805550 | 68 | E>K | No | 1000Genomes | |
| tmp_1_27848474_A_T | 69 | D>E | No | 1000Genomes | |
| ENSVATH05142568 | 80 | A>S | No | 1000Genomes | |
| tmp_1_27848434_T_A | 83 | T>S | No | 1000Genomes | |
| tmp_1_27847963_A_C | 97 | I>S | No | 1000Genomes | |
| ENSVATH13805546 | 108 | V>I | No | 1000Genomes | |
| ENSVATH05142538 | 114 | A>P | No | 1000Genomes | |
| ENSVATH05142537 | 121 | T>S | No | 1000Genomes | |
| ENSVATH14477966 | 138 | Y>N | No | 1000Genomes | |
| tmp_1_27847347_T_C | 204 | K>R | No | 1000Genomes | |
| ENSVATH05142514 | 210 | P>S | No | 1000Genomes | |
| tmp_1_27847325_C_G | 211 | E>D | No | 1000Genomes | |
| tmp_1_27847273_G_A | 229 | H>Y | No | 1000Genomes | |
| ENSVATH01533805 | 230 | E>V | No | 1000Genomes |
No associated diseases with Q9C9C5
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
| plasmodesma | A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| cytoplasmic translation | The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein. |
| ribosomal large subunit assembly | The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MPAKQRTPKV | NRNPDLIRGV | GKYSRSQMYH | KRGLWAIKAK | NGGVFPRHDA | KSKVDAPVEK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PPKFYPAEDV | KKPLPNRRTA | KPTKLRASIT | PGTVLIILAG | RFKGKRVVFL | KQLASGLLLV |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TGPFKINGVP | LRRVNQAYVI | GTSTKVDISG | VTLDKFDDKY | FGKVAEKKKK | KTEGEFFEAE |
| 190 | 200 | 210 | 220 | 230 | |
| KEEKKEIPQV | KKDDQKAVDA | ALIKAIEAVP | ELKTYLGARF | SLKQGMKPHE | LVF |