Q940B0
Gene name |
RPL18C (At5g27850, F14I23.10) |
Protein name |
60S ribosomal protein L18-3 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G27850 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q940B0
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q940B0-F1 | Predicted | AlphaFoldDB |
9 variants for Q940B0
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH14264210 | 2 | G>A | No | 1000Genomes | |
| ENSVATH14264455 | 72 | T>N | No | 1000Genomes | |
| ENSVATH11182123 | 95 | P>A | No | 1000Genomes | |
| ENSVATH14264456 | 110 | A>D | No | 1000Genomes | |
| tmp_5_9873976_G_A | 110 | A>T | No | 1000Genomes | |
| tmp_5_9874008_A_T | 120 | L>F | No | 1000Genomes | |
| ENSVATH11182245 | 128 | R>I | No | 1000Genomes | |
| tmp_5_9874139_G_A | 136 | V>I | No | 1000Genomes | |
| tmp_5_9874217_A_T | 162 | T>S | No | 1000Genomes |
No associated diseases with Q940B0
1 regional properties for Q940B0
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Ribosomal protein L18e/L15P | 2 - 188 | IPR021131 |
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
| cytosolic ribosome | A ribosome located in the cytosol. |
| plasmodesma | A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. |
| plastid | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
| vacuole | A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q07020 | RPL18 | 60S ribosomal protein L18 | Homo sapiens (Human) | PR |
| P35980 | Rpl18 | 60S ribosomal protein L18 | Mus musculus (Mouse) | PR |
| O22254 | RPL18A | Putative 60S ribosomal protein L18-1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| P42791 | RPL18B | 60S ribosomal protein L18-2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGIDLIAGGK | SKKTKRTAPK | SDDVYLKLLV | KLYRFLVRRS | NSNFNAVILK | RLFMSKVNKA |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PLSLSRLVEF | MTGKDDKIAV | LVGTITDDLR | VHEIPAMKVT | ALRFTERARA | RIEKAGGECL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TFDQLALRAP | LGQNTVLLRG | PKNSREAVKH | FGPAPGVPHS | NTKPYVRHKG | RKFEKARGKR |
| KSRGFKV |