Q5JN42

PR
Gene name
PSD2
Protein name
Phosphatidylserine decarboxylase proenzyme 2
Names
Species
Oryza sativa subsp japonica (Rice)
KEGG Pathway
EC number
4.1.1.65: Carboxy-lyases
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-88 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q5JN42

Entry ID Method Resolution Chain Position Source
AF-Q5JN42-F1 Predicted AlphaFoldDB

No variants for Q5JN42

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q5JN42

No associated diseases with Q5JN42

4 regional properties for Q5JN42

Type Name Position InterPro Accession
domain C2 domain 16 - 129 IPR000008
domain EF-hand domain 156 - 227 IPR002048
binding_site EF-Hand 1, calcium-binding site 169 - 181 IPR018247-1
binding_site EF-Hand 1, calcium-binding site 205 - 217 IPR018247-2

Functions

Description
EC Number 4.1.1.65 Carboxy-lyases
Subcellular Localization
  • Vacuole membrane ; Peripheral membrane protein
  • Endoplasmic reticulum membrane ; Peripheral membrane protein
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

2 GO annotations of cellular component

Name Definition
endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.
vacuolar membrane The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.

2 GO annotations of molecular function

Name Definition
calcium ion binding Binding to a calcium ion (Ca2+).
phosphatidylserine decarboxylase activity Catalysis of the reaction: H(+) + phosphatidyl-L-serine = CO(2) + phosphatidylethanolamine.

2 GO annotations of biological process

Name Definition
phosphatidylethanolamine biosynthetic process The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine.
protein autoprocessing Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein.

3 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
Q10T43 PSD1 Phosphatidylserine decarboxylase proenzyme 1, mitochondrial Oryza sativa subsp japonica (Rice) PR
A4GNA8 PSD3 Phosphatidylserine decarboxylase proenzyme 3 Arabidopsis thaliana (Mouse-ear cress) PR
F4KAK5 PSD2 Phosphatidylserine decarboxylase proenzyme 2 Arabidopsis thaliana (Mouse-ear cress) PR
10 20 30 40 50 60
MGHSPSRHNA CGGGGGDGES PPSPLPSRFE RFRRRLRLRH RDRAGRPGGD AHASESGTGR
70 80 90 100 110 120
AIAVDEFAGI ARIRIVKEKK VVVETNGPHI ARISVFETNR FSKNTLVGYC EVDLFELLTK
130 140 150 160 170 180
DLDEHSEVLS LLDPSSSATI VGSISISCYI EDPVETEQSF ARRVLAIVDY NEDGELSLSE
190 200 210 220 230 240
FSDLMKAFGN KLAVAKIEEL FRQADKNGDG IVDMDELAAL LANQQEKEPL ISNCPVCGEI
250 260 270 280 290 300
LGKHDKINDM IHMTLCFDEG TGNQIMTGGF LTDKQASYGW MFKLSEWAHF SSYDVGLHSG
310 320 330 340 350 360
STASHILVFD RRTKRLVEEV IDGKIVLSMR ALYQSKVGLT LIDTGVKDLL KNLSEKQGKK
370 380 390 400 410 420
MSSPESAKDI PKFLELFKDQ INLDEVKDPL ESFKTFNEFF VRQLKPGARP IACYEQDTIA
430 440 450 460 470 480
TCAADSRLMT FSSVDESTRL WIKGRKFSIE GLLGKDVHSD ALCNGSLVIF RLAPQDYHRF
490 500 510 520 530 540
HVPVSGTLEK FVEIPGCLYT VNPIAVNSKY CNVFTENKRV VSIISTSEFG KVAFVAIGAT
550 560 570 580 590 600
MVGSIEFLKE EGDYVHKGDE FGYFAFGGST VICVFEKDAI EFDADLLANS ARSLETLVSV
610 620
GMRLGVSTRN RDLQPQELEK CSLE