Q16851
Gene name |
UGP2 |
Protein name |
UTP--glucose-1-phosphate uridylyltransferase |
Names |
UDP-glucose pyrophosphorylase, UDPGP, UGPase |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:7360 |
EC number |
2.7.7.9: Nucleotidyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
4 structures for Q16851
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 3R2W | X-ray | 360 A | A/B/C/D | 1-508 | PDB |
| 3R3I | X-ray | 357 A | A/B/C/D | 1-508 | PDB |
| 4R7P | X-ray | 335 A | A/B/C/D | 2-508 | PDB |
| AF-Q16851-F1 | Predicted | AlphaFoldDB |
299 variants for Q16851
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV002273831 RCV000993844 RCV001370354 rs768305634 VAR_083746 CA1683098 |
12 | M>V | Developmental and epileptic encephalopathy, 83 D-6618 DEE83; the nucleotide substitution also alters the translation of other alternatively spliced products of the gene globally reducing functional enzyme levels and causing reduced synthesis of UDP-glucose and decreased glycogen biosynthetic process; no effect on protein localization; no effect on UTP:glucose-1-phosphate uridylyltransferase activity [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC dbSNP gnomAD |
|
rs145708651 CA1683008 |
3 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM3659922 CA1683009 rs774418166 |
3 | R>T | liver oesophagus [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs1323998596 CA346992279 |
4 | F>I | No |
ClinGen TOPMed |
|
|
CA1683010 rs148936447 |
4 | F>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs879033238 CA48493877 |
6 | Q>* | No |
ClinGen gnomAD |
|
|
rs879033238 CA48493874 |
6 | Q>E | No |
ClinGen gnomAD |
|
|
CA48493883 rs1004500325 |
6 | Q>R | No |
ClinGen Ensembl |
|
|
CA48502792 rs1033686143 |
9 | S>G | No |
ClinGen TOPMed |
|
|
CA346994495 rs1447457254 |
9 | S>N | No |
ClinGen TOPMed |
|
|
CA1683093 rs781116384 |
9 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA1683095 rs769279772 |
10 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA346994515 rs1276500050 |
10 | K>T | No |
ClinGen gnomAD |
|
|
CA1683096 rs775023370 |
11 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1220462974 CA346994551 |
13 | S>P | No |
ClinGen gnomAD |
|
|
CA346994565 rs1268455133 |
14 | Q>* | No |
ClinGen gnomAD |
|
|
CA48502811 rs867356760 |
14 | Q>P | No |
ClinGen TOPMed |
|
|
CA48502814 rs867356760 |
14 | Q>R | No |
ClinGen TOPMed |
|
|
CA1683100 rs759233062 |
15 | D>Y | Variant assessed as Somatic; 0.0002321 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs767840104 CA346994621 |
18 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs767840104 CA1683101 |
18 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1470050259 CA346994628 |
19 | Q>* | No |
ClinGen gnomAD |
|
|
CA346994635 rs1159717549 |
19 | Q>R | No |
ClinGen gnomAD |
|
|
CA1683102 rs773845541 |
22 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA1683103 rs761317303 |
25 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1238226797 CA346994891 |
35 | E>G | No |
ClinGen gnomAD |
|
|
rs1463983336 CA346994901 |
37 | E>Q | No |
ClinGen TOPMed |
|
|
CA346994917 rs1243543932 |
39 | I>V | No |
ClinGen gnomAD |
|
|
rs1291253072 CA346994930 |
41 | T>A | No |
ClinGen gnomAD |
|
|
CA1683111 rs375235381 |
41 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs375235381 CA1683110 |
41 | T>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA48502907 rs77598504 |
42 | T>A | No |
ClinGen Ensembl |
|
|
rs1437372077 CA346994957 |
46 | H>D | No |
ClinGen gnomAD |
|
|
rs527937828 CA1683113 |
46 | H>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA48502934 rs925661301 |
47 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1382703962 CA346994978 |
49 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
CA1683114 rs552871425 |
49 | E>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1225686895 CA346995221 |
50 | H>Y | No |
ClinGen TOPMed |
|
|
rs1348733811 CA346995238 |
51 | T>A | No |
ClinGen TOPMed |
|
|
CA346995251 rs1458133201 |
52 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs771407559 CA1683161 |
52 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1683163 rs138371007 |
55 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs942749291 CA48504133 |
57 | G>R | No |
ClinGen gnomAD |
|
|
CA1683166 rs762876553 |
59 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
CA1683165 rs776077450 COSM1022213 |
59 | R>W | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed |
|
CA346995418 rs1170034004 |
62 | F>L | No |
ClinGen gnomAD |
|
|
rs376915072 CA1683167 |
63 | H>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs376915072 CA1683168 |
63 | H>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1467640761 CA346995475 |
66 | L>F | No |
ClinGen gnomAD |
|
|
rs1335389015 CA346995484 |
67 | Q>* | No |
ClinGen gnomAD |
|
|
rs1575814522 CA346995505 |
68 | E>G | No |
ClinGen Ensembl |
|
|
rs1320915858 CA346995524 |
69 | K>M | No |
ClinGen TOPMed |
|
|
CA346995540 rs1340185865 |
70 | G>E | No |
ClinGen gnomAD |
|
|
rs138512196 CA1683169 |
72 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA48504165 rs371382829 |
74 | D>A | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA1683172 rs144104512 |
75 | W>* | No |
ClinGen ESP ExAC gnomAD |
|
|
CA1683173 rs144104512 |
75 | W>C | No |
ClinGen ESP ExAC gnomAD |
|
|
CA1683171 rs11540496 |
75 | W>S | No |
ClinGen ExAC gnomAD |
|
|
CA1683175 rs757974887 |
76 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752682053 CA1683174 |
76 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1261179432 CA346995639 |
77 | K>R | No |
ClinGen gnomAD |
|
|
rs762421534 CA48504191 |
81 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1683177 rs762421534 |
81 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 81 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA346995715 rs1249047592 |
82 | P>S | No |
ClinGen TOPMed |
|
|
CA1683178 rs148783211 |
84 | D>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 84 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 85 | S>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs781014998 CA1683179 |
85 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs1193304654 CA346995769 |
85 | S>T | No |
ClinGen gnomAD |
|
|
rs1159611434 CA346998418 |
86 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1421136755 CA346998433 |
88 | P>A | No |
ClinGen gnomAD |
|
|
rs747311749 CA1683207 |
89 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs747311749 CA1683208 |
89 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
CA1683209 rs775394281 |
90 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA1683210 rs762872765 |
92 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs762872765 CA346998459 |
92 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA346998470 rs1374542908 |
93 | K>R | No |
ClinGen gnomAD |
|
|
CA1683212 rs370116660 |
94 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA346998476 rs1378908945 |
94 | A>V | No |
ClinGen gnomAD |
|
|
CA346998478 rs1408705333 |
95 | R>G | No |
ClinGen TOPMed |
|
|
CA1683216 rs750024855 |
97 | L>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA346998507 rs1179892833 |
99 | D>G | No |
ClinGen gnomAD |
|
|
rs1457689933 CA346998504 |
99 | D>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA346998511 rs1250712239 |
100 | N>H | No |
ClinGen TOPMed |
|
|
CA346998515 rs1192645287 |
100 | N>S | No |
ClinGen TOPMed |
|
|
rs765983250 CA1683218 |
101 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA1683220 rs186397005 |
104 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1457926772 CA346998569 |
106 | N>S | No |
ClinGen gnomAD |
|
|
rs758391186 CA346998600 |
107 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1331970023 CA346998624 |
109 | V>A | No |
ClinGen gnomAD |
|
|
rs1575850131 CA346998654 |
111 | V>G | No |
ClinGen Ensembl |
|
|
CA346998695 rs1575850135 |
113 | L>P | No |
ClinGen Ensembl |
|
|
CA1683226 rs771143668 |
114 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1247312594 CA346998889 |
124 | K>E | No |
ClinGen gnomAD |
|
|
rs749025814 CA1683228 |
126 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs533756550 CA48513004 |
131 | G>A | No |
ClinGen gnomAD |
|
|
rs113894345 CA1683230 |
131 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1233849801 CA346999115 |
136 | N>K | No |
ClinGen TOPMed |
|
|
rs942682209 CA48513005 |
139 | L>M | No |
ClinGen TOPMed |
|
|
CA1683233 rs575125479 |
140 | D>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA346999193 rs1200263392 |
140 | D>N | No |
ClinGen gnomAD |
|
|
CA346999201 rs1424024725 |
141 | L>V | No |
ClinGen gnomAD |
|
|
rs144988193 CA48513006 |
143 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs144988193 CA1683234 |
143 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1477211009 CA346999221 |
144 | Q>H | No |
ClinGen gnomAD |
|
|
CA1683235 rs760129910 |
144 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766002425 CA1683236 |
147 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
CA346999285 rs1214686279 |
151 | K>N | No |
ClinGen TOPMed |
|
|
CA346999287 rs1479857593 |
152 | T>P | No |
ClinGen gnomAD |
|
|
CA346999298 rs1157042062 |
153 | Y>C | No |
ClinGen gnomAD |
|
|
CA48513132 rs763674386 |
158 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
CA346999349 rs1300082445 |
158 | P>S | No |
ClinGen gnomAD |
|
|
CA346999407 rs1302590659 |
163 | N>D | No |
ClinGen gnomAD |
|
|
rs747928875 CA1683250 |
169 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 169 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1683251 rs772000155 |
171 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1164138295 CA346999551 |
173 | K>N | No |
ClinGen TOPMed |
|
| TCGA novel | 174 | I>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1683252 rs773042126 |
174 | I>L | No |
ClinGen ExAC gnomAD |
|
| rs763972594 | 174 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA48513134 rs143138378 |
174 | I>T | No |
ClinGen ESP |
|
|
CA1683253 rs760161480 |
176 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs770411208 CA1683254 |
176 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs776249452 CA1683255 |
179 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA1683256 rs141231511 |
179 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA346999673 rs1379499236 |
182 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA1683258 rs775790642 |
182 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1161570799 CA346999696 |
184 | K>* | No |
ClinGen gnomAD |
|
| TCGA novel | 184 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 185 | I>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs764604129 CA1683260 |
185 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763248555 CA1683259 |
185 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA48513135 rs772590769 |
186 | Y>C | No |
ClinGen Ensembl |
|
|
rs368189652 CA1683261 |
187 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1467510984 CA346999760 |
189 | N>H | No |
ClinGen TOPMed |
|
|
rs775018331 CA1683282 |
193 | Y>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 193 | Y>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1376491908 CA347000363 |
194 | P>R | No |
ClinGen gnomAD |
|
|
rs764424792 CA1683285 |
198 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs774901295 CA347000401 |
199 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762269405 CA1683287 |
200 | S>Y | No |
ClinGen ExAC gnomAD |
|
|
CA1683288 rs768172130 |
201 | L>S | No |
ClinGen ExAC gnomAD |
|
|
CA347000426 rs1235559102 |
204 | V>I | No |
ClinGen gnomAD |
|
|
CA347000446 rs1420044228 |
207 | D>N | No |
ClinGen gnomAD |
|
|
CA1683293 rs756279171 |
209 | S>F | No |
ClinGen ExAC |
|
|
CA347000494 rs1461236967 |
214 | N>D | No |
ClinGen gnomAD |
|
|
rs371974636 CA1683294 |
214 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA347000505 rs1425004663 |
215 | T>I | No |
ClinGen gnomAD |
|
| TCGA novel | 216 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754070567 CA1683295 |
217 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA347000522 rs1558962012 |
218 | W>* | No |
ClinGen Ensembl |
|
|
CA1683298 rs777474899 |
221 | P>A | No |
ClinGen ExAC gnomAD |
|
|
COSM722088 rs1356768880 CA347000579 |
226 | I>T | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA347000609 rs1406965756 |
228 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1406965756 CA347000604 |
228 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA1683301 rs781128834 |
229 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1683302 rs200044468 |
232 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1216324642 CA347000762 |
236 | L>F | No |
ClinGen gnomAD |
|
|
CA1683304 rs148522627 |
241 | G>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA347000866 rs148522627 |
241 | G>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs748943415 CA1683305 |
243 | G>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 244 | K>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1264048203 CA347001010 |
252 | I>V | No |
ClinGen gnomAD |
|
|
CA48513297 rs369549483 |
254 | N>S | No |
ClinGen ESP |
|
| TCGA novel | 255 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA347001064 rs1280589983 |
260 | D>G | No |
ClinGen gnomAD |
|
|
rs146058060 CA1683309 |
262 | Y>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1683308 rs762294322 |
262 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA48513299 rs533964219 |
267 | L>P | No |
ClinGen Ensembl |
|
|
rs1130982 VAR_033042 CA48513300 |
268 | M>I | No |
ClinGen UniProt Ensembl dbSNP |
|
|
rs773864022 CA1683310 |
268 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA1683311 rs760836817 |
269 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766619363 CA1683312 |
272 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs372567223 CA48513301 |
274 | K>E | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs1357210503 CA347001155 |
274 | K>R | No |
ClinGen TOPMed |
|
|
CA1683313 rs201388107 |
275 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA1683314 rs759714880 |
275 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA1683315 rs765525123 |
277 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs757056656 CA1683317 |
280 | M>R | No |
ClinGen ExAC |
|
|
rs202242009 CA1683320 |
284 | N>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1282268404 CA347001226 |
285 | K>E | No |
ClinGen gnomAD |
|
|
CA347001240 COSM271902 rs1351745580 |
287 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA1683321 rs779471708 |
287 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748862914 CA1683322 |
290 | V>I | No |
ClinGen ExAC gnomAD |
|
| rs1177583716 | 292 | G>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1558962820 CA347001288 |
292 | G>V | No |
ClinGen Ensembl |
|
| TCGA novel | 293 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 296 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA347001322 rs1575856192 |
298 | Y>H | No |
ClinGen Ensembl |
|
|
CA347001329 rs1331330901 |
299 | E>K | No |
ClinGen TOPMed |
|
|
CA347001458 rs1365055593 |
308 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA347001572 rs1307501598 |
314 | H>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA347001600 rs1291180178 |
315 | V>A | No |
ClinGen gnomAD |
|
|
CA1683346 rs758810269 |
317 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1335560022 CA347001679 |
319 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
CA347001674 rs1335560022 |
319 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1004789086 CA48513351 |
323 | K>N | No |
ClinGen Ensembl |
|
|
rs1382123595 CA347001748 |
323 | K>Q | No |
ClinGen TOPMed |
|
|
CA1683351 rs745870029 |
334 | I>S | No |
ClinGen ExAC gnomAD |
|
|
rs200855460 CA1683350 |
334 | I>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs376428418 CA1683352 |
337 | A>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1439190621 CA347001900 |
337 | A>T | No |
ClinGen gnomAD |
|
|
rs1416452395 CA347001911 |
339 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
CA347001917 rs376047157 |
340 | K>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs376047157 CA1683353 |
340 | K>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs373657262 CA1683354 |
343 | Q>* | No |
ClinGen ESP ExAC gnomAD |
|
|
CA1683355 rs373657262 |
343 | Q>K | No |
ClinGen ESP ExAC gnomAD |
|
|
rs868054051 CA48513354 |
343 | Q>R | No |
ClinGen gnomAD |
|
|
CA347001942 rs1465075873 |
344 | E>Q | No |
ClinGen gnomAD |
|
|
CA1683356 rs367846320 COSM1242980 |
348 | I>T | oesophagus [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA347001984 rs1394449449 |
349 | D>E | No |
ClinGen gnomAD |
|
|
rs1333754807 CA347001986 |
350 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1333754807 CA347001985 |
350 | M>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1267469623 CA347002029 |
355 | N>K | No |
ClinGen TOPMed |
|
|
rs1276443089 CA347002035 |
356 | A>G | No |
ClinGen gnomAD |
|
|
CA347002031 rs1235243583 |
356 | A>S | No |
ClinGen gnomAD |
|
|
CA1683358 rs766159792 |
357 | K>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA48513356 rs1028713862 |
357 | K>N | No |
ClinGen Ensembl |
|
|
rs1263791730 CA347002057 |
358 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1263791730 CA347002058 |
358 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1431419581 CA347002074 |
360 | D>E | No |
ClinGen gnomAD |
|
| TCGA novel | 362 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 366 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs769400835 | 374 | A>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA347002171 rs1359267275 |
375 | A>V | No |
ClinGen TOPMed |
|
|
rs1157095799 CA347002173 |
376 | I>V | No |
ClinGen gnomAD |
|
|
rs763775247 CA1683385 |
377 | K>R | No |
ClinGen ExAC gnomAD |
|
|
CA347002190 rs1230330084 |
378 | S>T | No |
ClinGen TOPMed |
|
|
CA347002207 rs1454402417 |
380 | E>G | No |
ClinGen gnomAD |
|
|
CA1683387 rs757550246 |
381 | N>H | No |
ClinGen ExAC gnomAD |
|
|
CA347002216 rs1386772684 |
381 | N>K | No |
ClinGen gnomAD |
|
|
rs750783431 CA1683390 |
386 | N>H | No |
ClinGen ExAC gnomAD |
|
|
rs576892484 CA1683394 |
391 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs779090152 CA1683395 |
391 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1253333083 CA347002283 |
392 | F>S | No |
ClinGen gnomAD |
|
|
CA1683397 rs770605437 |
394 | P>S | No |
ClinGen ExAC |
|
|
rs1407561109 CA347002327 |
399 | S>* | No |
ClinGen gnomAD |
|
|
CA347002374 rs1461326727 |
406 | S>* | No |
ClinGen gnomAD |
|
|
rs769799837 CA1683400 |
407 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA48513469 rs1009256118 |
408 | L>F | No |
ClinGen Ensembl |
|
|
rs775575324 CA1683401 |
409 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 414 | G>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1683403 rs763755146 |
416 | L>Q | No |
ClinGen ExAC gnomAD |
|
|
CA1683406 rs767097426 |
418 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1281603909 CA347002450 |
418 | M>T | No |
ClinGen gnomAD |
|
|
CA347002464 rs1232536041 |
420 | E>A | No |
ClinGen gnomAD |
|
|
CA347002463 rs1319421745 COSM1306927 |
420 | E>K | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs543771246 CA48513470 |
421 | K>N | No |
ClinGen 1000Genomes gnomAD |
|
|
CA1683408 rs756472815 |
422 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756472815 CA1683409 |
422 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1683410 rs754398362 |
425 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1481074066 CA347002505 |
426 | T>I | No |
ClinGen gnomAD |
|
|
CA347002534 rs1474939050 |
431 | K>T | No |
ClinGen gnomAD |
|
|
rs1464555732 CA347002563 |
435 | S>Y | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA1683414 rs775899208 |
436 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772292329 CA1683415 |
437 | T>M | No |
ClinGen ExAC gnomAD |
|
|
CA1683452 rs141997600 |
439 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA347002598 rs1332270542 |
439 | V>I | No |
ClinGen TOPMed |
|
|
CA347002611 rs759911743 |
441 | D>H | No |
ClinGen ExAC gnomAD |
|
|
rs759911743 CA1683453 |
441 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs904000364 CA48513807 |
444 | R>K | No |
ClinGen Ensembl |
|
|
CA347002638 rs1345680647 |
445 | R>* | No |
ClinGen gnomAD |
|
|
CA347002678 rs1432885509 |
450 | P>L | No |
ClinGen gnomAD |
|
|
rs1432885509 CA347002680 |
450 | P>R | No |
ClinGen gnomAD |
|
|
CA1683455 rs148369617 |
451 | D>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1401473058 CA347002694 |
452 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1466954349 CA347002689 |
452 | M>V | No |
ClinGen TOPMed |
|
|
rs373218713 CA1683456 |
453 | L>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs375988042 CA48513808 |
456 | D>H | No |
ClinGen ESP |
|
|
rs751800663 CA1683459 |
460 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA1683461 rs757514709 |
461 | S>* | No |
ClinGen ExAC TOPMed |
|
|
rs781577162 CA1683462 |
464 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1455002295 CA347002794 |
468 | K>E | No |
ClinGen gnomAD |
|
| rs1252687688 | 469 | N>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1683463 rs749023934 |
469 | N>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA347002816 rs1558967011 |
471 | S>P | No |
ClinGen Ensembl |
|
|
CA346992035 rs1339145634 |
475 | T>M | No |
ClinGen TOPMed gnomAD |
|
|
CA346992042 rs1483862458 |
477 | I>F | No |
ClinGen gnomAD |
|
|
rs1214609729 CA346992057 |
479 | I>V | No |
ClinGen TOPMed |
|
|
rs200565073 CA1683494 |
480 | A>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs931490069 CA48491379 |
485 | R>T | No |
ClinGen Ensembl |
|
|
CA48491382 rs770342759 |
486 | I>N | No |
ClinGen Ensembl |
|
|
CA346992117 rs1228189311 |
487 | D>E | No |
ClinGen TOPMed |
|
|
CA346992110 rs1411934925 |
487 | D>N | No |
ClinGen gnomAD |
|
|
CA346992119 rs1475488877 |
488 | I>V | No |
ClinGen gnomAD |
|
|
CA1683497 rs780812142 |
489 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA346992133 rs1398869442 |
490 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs770166300 CA1683499 |
490 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA1683500 rs775677196 |
492 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA48491411 rs940303420 |
493 | V>I | No |
ClinGen Ensembl |
|
|
rs553122616 CA1683504 |
497 | K>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA48491434 CA48491439 rs150445959 |
499 | V>L | No |
ClinGen ESP |
|
| TCGA novel | 499 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1683505 rs142852088 |
502 | N>S | No |
ClinGen ESP ExAC gnomAD |
|
|
CA1683506 rs149158709 |
504 | R>C | Variant assessed as Somatic; 0.0004622 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA1683507 rs750638834 |
504 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA346992217 rs149158709 |
504 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA346992234 rs1410377770 |
506 | L>F | No |
ClinGen TOPMed |
1 associated diseases with Q16851
[MIM: 618744]: Developmental and epileptic encephalopathy 83 (DEE83)
A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE83 is an autosomal recessive form characterized by onset of frequent, intractable seizures in the first days to months of life. Affected individuals have profound developmental delay with no motor or language skill acquisition, and poor or absent visual tracking. Many patients die in the first years of life. {ECO:0000269|PubMed:31820119}. Note=The disease is caused by variants affecting the gene represented in this entry. A recurrent, pathogenic variant affecting the translation initiation codon of isoform 2 has been found in multiple DEE83 families. The variant results in the absence of isoform 2 and leads to reduced levels of functional UGP2 enzyme in neural stem cells. The absence of isoform 2 is compensated by an increased abundance of a functional isoform 1, carrying variant p.Met12Val, which may explain the survival of the patients. A complete absence of functional UGP2 in all cells would be embryonic lethal. {ECO:0000269|PubMed:31820119}.
Without disease ID
- A form of epileptic encephalopathy, a heterogeneous group of severe early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE83 is an autosomal recessive form characterized by onset of frequent, intractable seizures in the first days to months of life. Affected individuals have profound developmental delay with no motor or language skill acquisition, and poor or absent visual tracking. Many patients die in the first years of life. {ECO:0000269|PubMed:31820119}. Note=The disease is caused by variants affecting the gene represented in this entry. A recurrent, pathogenic variant affecting the translation initiation codon of isoform 2 has been found in multiple DEE83 families. The variant results in the absence of isoform 2 and leads to reduced levels of functional UGP2 enzyme in neural stem cells. The absence of isoform 2 is compensated by an increased abundance of a functional isoform 1, carrying variant p.Met12Val, which may explain the survival of the patients. A complete absence of functional UGP2 in all cells would be embryonic lethal. {ECO:0000269|PubMed:31820119}.
No regional properties for Q16851
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q16851 | |||
Functions
| Description | ||
|---|---|---|
| EC Number | 2.7.7.9 | Nucleotidyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| glucose binding | Binding to D- or L-enantiomers of glucose. |
| identical protein binding | Binding to an identical protein or proteins. |
| metal ion binding | Binding to a metal ion. |
| pyrimidine ribonucleotide binding | Binding to a pyrimidine ribonucleotide, any compound consisting of a pyrimidine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety. |
| UTP:glucose-1-phosphate uridylyltransferase activity | Catalysis of the reaction: alpha-D-glucose 1-phosphate + UTP = diphosphate + UDP-D-glucose. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| brain development | The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.). |
| glucose 1-phosphate metabolic process | The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1. |
| glycogen biosynthetic process | The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues. |
| glycogen metabolic process | The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages. |
| UDP-glucose metabolic process | The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P32861 | UGP1 | UTP--glucose-1-phosphate uridylyltransferase | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| Q07130 | UGP2 | UTP--glucose-1-phosphate uridylyltransferase | Bos taurus (Bovine) | PR |
| Q91ZJ5 | Ugp2 | UTP--glucose-1-phosphate uridylyltransferase | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSRFVQDLSK | AMSQDGASQF | QEVIRQELEL | SVKKELEKIL | TTASSHEFEH | TKKDLDGFRK |
| 70 | 80 | 90 | 100 | 110 | 120 |
| LFHRFLQEKG | PSVDWGKIQR | PPEDSIQPYE | KIKARGLPDN | ISSVLNKLVV | VKLNGGLGTS |
| 130 | 140 | 150 | 160 | 170 | 180 |
| MGCKGPKSLI | GVRNENTFLD | LTVQQIEHLN | KTYNTDVPLV | LMNSFNTDED | TKKILQKYNH |
| 190 | 200 | 210 | 220 | 230 | 240 |
| CRVKIYTFNQ | SRYPRINKES | LLPVAKDVSY | SGENTEAWYP | PGHGDIYASF | YNSGLLDTFI |
| 250 | 260 | 270 | 280 | 290 | 300 |
| GEGKEYIFVS | NIDNLGATVD | LYILNHLMNP | PNGKRCEFVM | EVTNKTRADV | KGGTLTQYEG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| KLRLVEIAQV | PKAHVDEFKS | VSKFKIFNTN | NLWISLAAVK | RLQEQNAIDM | EIIVNAKTLD |
| 370 | 380 | 390 | 400 | 410 | 420 |
| GGLNVIQLET | AVGAAIKSFE | NSLGINVPRS | RFLPVKTTSD | LLLVMSNLYS | LNAGSLTMSE |
| 430 | 440 | 450 | 460 | 470 | 480 |
| KREFPTVPLV | KLGSSFTKVQ | DYLRRFESIP | DMLELDHLTV | SGDVTFGKNV | SLKGTVIIIA |
| 490 | 500 | ||||
| NHGDRIDIPP | GAVLENKIVS | GNLRILDH |