P51858
Gene name |
HDGF (HMG1L2) |
Protein name |
Hepatoma-derived growth factor |
Names |
HDGF, High mobility group protein 1-like 2, HMG-1L2 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:3068 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for P51858
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 1RI0 | NMR | - | A | 1-100 | PDB |
| 2NLU | NMR | - | A/B | 1-100 | PDB |
| AF-P51858-F1 | Predicted | AlphaFoldDB |
197 variants for P51858
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs1260419652 CA342915299 |
4 | S>A | No |
ClinGen TOPMed |
|
|
CA342915291 rs1490472576 |
4 | S>C | No |
ClinGen gnomAD |
|
|
CA1166721 rs767111801 |
5 | N>S | Variant assessed as Somatic; 0.0001398 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA1166720 rs759201444 |
6 | R>W | No |
ClinGen ExAC gnomAD |
|
|
CA342915257 rs1218939382 |
7 | Q>* | No |
ClinGen TOPMed |
|
|
CA1166718 rs774910787 |
7 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
CA342915254 rs774910787 |
7 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
rs771415808 CA1166717 |
8 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1202192764 CA342915230 |
9 | E>K | No |
ClinGen Ensembl |
|
|
rs1406464385 CA342915212 |
10 | Y>F | No |
ClinGen gnomAD |
|
|
rs868163154 CA31095050 |
13 | G>W | No |
ClinGen Ensembl |
|
|
rs1225729279 CA342915135 |
14 | D>E | No |
ClinGen gnomAD |
|
| TCGA novel | 16 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 17 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs763557184 CA1166716 |
18 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs1398670576 CA342915051 |
19 | K>R | No |
ClinGen gnomAD |
|
|
rs748138050 CA1166713 |
26 | W>G | No |
ClinGen ExAC gnomAD |
|
|
rs770739734 CA1166691 |
30 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1028970679 CA31090793 |
32 | E>K | No |
ClinGen gnomAD |
|
|
rs777519088 CA1166689 |
33 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1571543900 CA342912680 |
35 | E>G | No |
ClinGen Ensembl |
|
|
rs1571543889 CA342912663 |
36 | A>P | No |
ClinGen Ensembl |
|
|
CA1166688 rs756060981 |
36 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
| TCGA novel | 38 | V>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166686 rs150810015 |
38 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs150810015 CA1166685 |
38 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1321277705 CA342912545 |
40 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs372321208 CA31090777 |
43 | N>K | No |
ClinGen ESP TOPMed |
|
|
CA1166684 rs751278895 |
44 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs766089631 CA1166683 |
45 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA1166682 rs758093528 |
46 | Q>* | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 50 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342912360 rs1208696194 |
51 | G>R | No |
ClinGen TOPMed |
|
|
rs1402218484 CA342912338 |
52 | T>P | No |
ClinGen gnomAD |
|
|
rs1385420300 CA342912281 |
55 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs553464376 CA1166661 |
58 | L>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 63 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 66 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1339960423 CA342911821 |
71 | E>Q | No |
ClinGen gnomAD |
|
|
CA342911724 rs1277566152 |
75 | K>Q | No |
ClinGen gnomAD |
|
|
rs1315039009 CA342911718 |
75 | K>R | No |
ClinGen TOPMed |
|
|
rs767576468 CA1166657 |
76 | P>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 77 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342911441 rs1424962653 |
84 | E>D | No |
ClinGen gnomAD |
|
|
rs769497614 CA1166654 |
84 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs11556976 CA31090567 |
90 | E>K | No |
ClinGen Ensembl |
|
|
rs913630310 CA31090559 |
93 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 94 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 95 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342911188 rs1245243757 |
96 | K>E | No |
ClinGen gnomAD |
|
|
CA342911177 rs1206713192 |
96 | K>M | No |
ClinGen gnomAD |
|
|
CA342911162 rs1571543010 |
97 | A>P | No |
ClinGen Ensembl |
|
|
CA342911146 rs1179207124 |
98 | S>F | No |
ClinGen TOPMed |
|
| TCGA novel | 98 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1196683401 CA342911120 |
99 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs779714352 CA1166649 |
99 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1196683401 CA342911119 |
99 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1393142382 CA342911070 |
101 | Q>R | No |
ClinGen TOPMed |
|
|
CA342910927 rs1350362694 |
102 | S>C | No |
ClinGen TOPMed |
|
|
rs945276882 CA31090170 |
103 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA342910919 rs1194509996 |
104 | Q>K | No |
ClinGen gnomAD |
|
|
rs1385093355 CA342910910 |
105 | K>Q | No |
ClinGen gnomAD |
|
|
TCGA novel rs148010782 CA1166605 |
106 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ESP ExAC TOPMed gnomAD NCI-TCGA |
|
rs199809801 CA1166604 |
108 | C>S | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1398083194 CA342910832 |
110 | E>A | No |
ClinGen gnomAD |
|
|
CA342910802 rs1231487248 |
111 | E>A | No |
ClinGen TOPMed |
|
|
CA342910806 rs1178281787 |
111 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1178281787 CA342910812 |
111 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs748544475 CA1166603 |
113 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA1166602 rs369237103 |
114 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs183479594 CA31090139 |
114 | P>L | No |
ClinGen 1000Genomes |
|
|
rs369237103 CA342910749 |
114 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1166601 rs200564111 |
116 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1215675835 CA342910698 |
117 | E>K | No |
ClinGen TOPMed |
|
|
CA342910673 rs1238291674 |
118 | A>P | No |
ClinGen gnomAD |
|
|
rs145403460 CA1166599 |
118 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1487050392 CA342910632 |
120 | E>A | No |
ClinGen TOPMed |
|
|
CA342910617 rs758392974 |
121 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750720441 CA1166597 |
121 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs758392974 CA1166598 |
121 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA342910614 rs758392974 |
121 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 121 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166595 rs562299927 |
123 | G>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1027685958 CA31090128 |
123 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
CA342910574 rs1027685958 |
123 | G>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 126 | K>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1265218607 CA342910500 |
127 | G>R | No |
ClinGen Ensembl |
|
|
rs767358031 CA1166593 |
128 | N>S | No |
ClinGen ExAC gnomAD |
|
|
COSM1209424 rs1374562419 COSM1209425 CA342910362 |
134 | D>N | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
COSM1235643 rs774146430 COSM1235642 CA1166591 |
135 | E>K | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA1166588 rs143813161 |
140 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA31090107 rs143813161 |
140 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs544419635 CA1166587 |
142 | D>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 142 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1558031720 CA342910229 |
142 | D>Y | No |
ClinGen Ensembl |
|
|
rs776984250 CA1166585 |
144 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA1166583 rs374787693 |
147 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs772230975 CA1166581 |
148 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA342910087 rs903307133 |
149 | N>K | No |
ClinGen TOPMed |
|
|
CA1166579 rs745973675 |
150 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1189590680 CA342910050 |
151 | K>R | No |
ClinGen TOPMed |
|
|
CA342910024 rs1287090650 |
152 | G>A | No |
ClinGen gnomAD |
|
|
rs757562304 CA342910009 |
153 | A>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA342910006 rs757562304 |
153 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA342910017 rs1571540538 |
153 | A>T | No |
ClinGen Ensembl |
|
|
rs757562304 COSM1583525 COSM897354 CA1166577 |
153 | A>V | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA31090039 rs893718127 |
158 | A>G | No |
ClinGen Ensembl |
|
|
CA342909931 rs6675747 |
158 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
CA31090043 rs6675747 |
158 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA342909900 rs1285818036 |
159 | G>E | No |
ClinGen gnomAD |
|
| TCGA novel | 160 | D>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166574 rs151063654 |
162 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1166573 rs369865214 |
163 | E>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA342909743 rs1388911023 |
164 | D>N | No |
ClinGen TOPMed |
|
| TCGA novel | 167 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1277135271 CA342909695 |
168 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs147426380 CA1166555 |
168 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 170 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166553 rs372280917 |
170 | K>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA1166551 rs750355824 |
171 | E>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 171 | E>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342909615 rs1279683775 |
172 | A>V | No |
ClinGen TOPMed |
|
|
CA342909575 rs1571539718 |
174 | N>T | No |
ClinGen Ensembl |
|
|
rs187134455 CA1166550 |
174 | N>Y | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs761289151 CA342909561 |
175 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA1166549 rs761289151 |
175 | P>T | No |
ClinGen ExAC gnomAD |
|
|
COSM676381 rs200554626 COSM1145975 CA342909546 |
176 | E>K | lung [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs200554626 CA1166548 |
176 | E>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1166547 rs73002716 |
177 | G>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA31089792 rs374107346 |
178 | E>V | No |
ClinGen Ensembl |
|
| TCGA novel | 179 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1287572977 CA342909469 |
181 | E>Q | No |
ClinGen gnomAD |
|
| TCGA novel | 182 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166544 rs767851811 |
184 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA342909400 rs1445057109 |
186 | E>G | No |
ClinGen TOPMed |
|
|
rs760182397 CA1166543 |
187 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA1166541 rs771176911 |
191 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749411435 CA1166540 |
191 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA342909246 rs1164242519 |
192 | P>L | No |
ClinGen TOPMed |
|
|
CA342909249 rs1571539539 |
192 | P>S | No |
ClinGen Ensembl |
|
|
rs773295545 CA1166539 |
193 | M>R | No |
ClinGen ExAC gnomAD |
|
|
CA342909178 rs1571539486 |
195 | V>G | No |
ClinGen Ensembl |
|
|
CA342909185 rs1435050623 |
195 | V>L | No |
ClinGen TOPMed gnomAD |
|
|
CA342909186 rs1435050623 |
195 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
CA31089737 rs375503842 |
198 | N>H | No |
ClinGen ESP TOPMed |
|
|
CA342909121 rs1324427322 |
198 | N>S | No |
ClinGen gnomAD |
|
|
CA342909104 rs1467667101 |
199 | S>T | No |
ClinGen gnomAD |
|
|
rs1558031103 CA342909073 |
200 | T>N | No |
ClinGen Ensembl |
|
|
CA342909079 rs1571539387 |
200 | T>P | No |
ClinGen Ensembl |
|
|
CA1166534 rs4399146 |
201 | P>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
VAR_061209 rs4399146 CA1166533 |
201 | P>L | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA31089718 rs4399146 |
201 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1299657068 CA342909056 |
201 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 202 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342909043 rs1427511709 |
202 | S>T | No |
ClinGen gnomAD |
|
|
rs757142792 CA1166532 |
203 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA342908984 rs1477716012 |
204 | P>S | No |
ClinGen gnomAD |
|
|
CA31089681 rs11556974 |
205 | G>D | No |
ClinGen Ensembl |
|
|
rs375226201 CA1166529 |
205 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs752385621 CA1166528 |
206 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA1166526 rs759951478 |
207 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1172088312 CA342908939 |
207 | G>R | No |
ClinGen gnomAD |
|
|
rs562259611 CA1166525 |
208 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA1166523 rs201482955 |
208 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1138657 rs201482955 CA1166522 COSM529522 |
208 | R>Q | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA1166524 rs562259611 |
208 | R>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 209 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342908908 rs1342204024 |
209 | G>R | No |
ClinGen gnomAD |
|
|
CA342908877 rs1446940657 |
211 | P>L | No |
ClinGen gnomAD |
|
|
CA31089644 rs1044914054 |
212 | Q>R | No |
ClinGen TOPMed gnomAD |
|
|
CA1166518 rs776889774 |
213 | E>A | No |
ClinGen ExAC TOPMed |
|
| TCGA novel | 214 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342908770 rs565033550 |
215 | E>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA1166516 rs565033550 |
215 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA342908708 rs4437869 CA342908710 |
216 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA1166515 rs778627953 |
216 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1160771946 CA342908696 |
217 | E>* | No |
ClinGen TOPMed |
|
|
CA342908687 rs1178952978 |
217 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA342908694 rs1361542731 |
217 | E>G | No |
ClinGen TOPMed |
|
|
CA342908693 rs1361542731 |
217 | E>V | No |
ClinGen TOPMed |
|
|
rs1571538826 CA342908663 |
218 | E>D | No |
ClinGen Ensembl |
|
|
rs1403742404 CA342908635 |
219 | D>E | No |
ClinGen TOPMed |
|
|
rs573185750 CA1166507 |
221 | E>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1333859886 CA342908473 |
226 | K>N | No |
ClinGen TOPMed |
|
| TCGA novel | 228 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA342907614 rs1309763240 |
230 | E>G | No |
ClinGen TOPMed |
|
|
CA342907581 rs1346878533 |
231 | A>S | No |
ClinGen TOPMed |
|
| TCGA novel | 231 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA31089604 rs530319024 |
232 | P>L | No |
ClinGen gnomAD |
|
|
rs1210507077 CA342907549 |
232 | P>S | No |
ClinGen TOPMed |
|
| TCGA novel | 233 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166503 rs767312799 |
233 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1484279318 CA342907515 |
234 | I>N | No |
ClinGen TOPMed |
|
|
CA342907517 rs1484469926 |
234 | I>V | No |
ClinGen gnomAD |
|
| TCGA novel | 237 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA1166502 rs200493622 |
237 | H>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA342907353 rs1309086616 |
239 | S>G | No |
ClinGen TOPMed gnomAD |
No associated diseases with P51858
No regional properties for P51858
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for P51858 | |||
Functions
7 GO annotations of cellular component
| Name | Definition |
|---|---|
| collagen-containing extracellular matrix | An extracellular matrix consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that provides not only essential physical scaffolding for the cellular constituents but can also initiate crucial biochemical and biomechanical cues required for tissue morphogenesis, differentiation and homeostasis. The components are secreted by cells in the vicinity and form a sheet underlying or overlying cells such as endothelial and epithelial cells. |
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| transcription repressor complex | A protein complex that possesses activity that prevents or downregulates transcription. |
12 GO annotations of molecular function
| Name | Definition |
|---|---|
| actin binding | Binding to monomeric or multimeric forms of actin, including actin filaments. |
| DNA-binding transcription repressor activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II. |
| double-stranded DNA binding | Binding to double-stranded DNA. |
| growth factor activity | The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation. |
| heparin binding | Binding to heparin, a member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues. |
| nucleotide binding | Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
| RNA polymerase II cis-regulatory region sequence-specific DNA binding | Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II. |
| transcription coregulator activity | A transcription regulator activity that modulates the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. |
| transcription corepressor activity | A transcription coregulator activity that represses or decreases the transcription of specific gene sets via binding to a DNA-bound DNA-binding transcription factor, either on its own or as part of a complex. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription corepressors modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators. |
| transcription corepressor binding | Binding to a transcription corepressor, a protein involved in negative regulation of transcription via protein-protein interactions with transcription factors and other proteins that negatively regulate transcription. Transcription corepressors do not bind DNA directly, but rather mediate protein-protein interactions between repressing transcription factors and the basal transcription machinery. |
| tubulin binding | Binding to monomeric or multimeric forms of tubulin, including microtubules. |
8 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to interleukin-7 | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-7 stimulus. |
| negative regulation of neuron apoptotic process | Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| positive regulation of cell division | Any process that activates or increases the frequency, rate or extent of cell division. |
| positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
| protein localization to nucleus | A process in which a protein transports or maintains the localization of another protein to the nucleus. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
13 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8MJG1 | PSIP1 | PC4 and SFRS1-interacting protein | Bos taurus (Bovine) | PR |
| Q9XSK7 | HDGF | Hepatoma-derived growth factor | Bos taurus (Bovine) | PR |
| Q66T72 | PSIP1 | PC4 and SFRS1-interacting protein | Felis catus (Cat) (Felis silvestris catus) | PR |
| Q5XXA9 | PSIP1 | Lens epithelium-derived growth factor | Gallus gallus (Chicken) | PR |
| O75475 | PSIP1 | PC4 and SFRS1-interacting protein | Homo sapiens (Human) | PR |
| Q7Z4V5 | HDGFL2 | Hepatoma-derived growth factor-related protein 2 | Homo sapiens (Human) | PR |
| Q9Y3E1 | HDGFL3 | Hepatoma-derived growth factor-related protein 3 | Homo sapiens (Human) | PR |
| Q99JF8 | Psip1 | PC4 and SFRS1-interacting protein | Mus musculus (Mouse) | PR |
| Q9JMG7 | Hdgfl3 | Hepatoma-derived growth factor-related protein 3 | Mus musculus (Mouse) | PR |
| P51859 | Hdgf | Hepatoma-derived growth factor | Mus musculus (Mouse) | PR |
| Q812D1 | Psip1 | PC4 and SFRS1-interacting protein | Rattus norvegicus (Rat) | PR |
| Q923W4 | Hdgfl3 | Hepatoma-derived growth factor-related protein 3 | Rattus norvegicus (Rat) | PR |
| Q8VHK7 | Hdgf | Hepatoma-derived growth factor | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSRSNRQKEY | KCGDLVFAKM | KGYPHWPARI | DEMPEAAVKS | TANKYQVFFF | GTHETAFLGP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| KDLFPYEESK | EKFGKPNKRK | GFSEGLWEIE | NNPTVKASGY | QSSQKKSCVE | EPEPEPEAAE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GDGDKKGNAE | GSSDEEGKLV | IDEPAKEKNE | KGALKRRAGD | LLEDSPKRPK | EAENPEGEEK |
| 190 | 200 | 210 | 220 | 230 | |
| EAATLEVERP | LPMEVEKNST | PSEPGSGRGP | PQEEEEEEDE | EEEATKEDAE | APGIRDHESL |