P21399
Gene name |
ACO1 (IREB1) |
Protein name |
Cytoplasmic aconitate hydratase |
Names |
Aconitase, Citrate hydro-lyase, Ferritin repressor protein, Iron regulatory protein 1, IRP1, Iron-responsive element-binding protein 1, IRE-BP 1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:48 |
EC number |
4.2.1.3: Hydro-lyases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for P21399
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2B3X | X-ray | 254 A | A | 2-889 | PDB |
| 2B3Y | X-ray | 185 A | A/B | 2-889 | PDB |
| AF-P21399-F1 | Predicted | AlphaFoldDB |
721 variants for P21399
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
rs748552310 CA5018499 |
2 | S>N | No |
ClinGen ExAC gnomAD |
|
|
CA373138445 CA373138447 rs1482161339 |
3 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
CA373138436 rs1250987818 |
3 | N>S | No |
ClinGen gnomAD |
|
|
CA192363469 rs977439368 |
4 | P>L | No |
ClinGen TOPMed |
|
|
rs1031755059 CA373138489 |
6 | A>E | No |
ClinGen TOPMed |
|
|
rs1031755059 CA192363483 |
6 | A>G | No |
ClinGen TOPMed |
|
|
CA5018502 rs201900147 |
6 | A>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5018501 rs201900147 |
6 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs770966790 CA5018503 |
7 | H>N | No |
ClinGen ExAC gnomAD |
|
|
CA192363493 rs138295884 |
8 | L>F | No |
ClinGen ESP |
|
|
CA373138532 rs1189368783 |
10 | E>* | No |
ClinGen gnomAD |
|
|
rs1287525535 CA373138549 |
11 | P>S | No |
ClinGen TOPMed |
|
|
CA373138566 rs373990127 |
12 | L>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759464257 CA5018505 |
13 | D>A | No |
ClinGen ExAC gnomAD |
|
|
CA373138607 rs1291357770 |
13 | D>E | No |
ClinGen TOPMed |
|
|
CA5018506 rs759464257 |
13 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA373138685 rs1169434132 |
17 | P>Q | No |
ClinGen gnomAD |
|
|
rs1395317431 CA373138692 |
18 | G>R | No |
ClinGen TOPMed |
|
|
rs376599072 CA5018507 |
19 | K>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA5018508 rs762827228 |
20 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs560315574 CA5018509 |
21 | F>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA192363526 rs751190138 |
22 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761603433 CA5018511 |
25 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs767118948 CA5018512 |
25 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018513 rs41313772 |
29 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1340380276 CA373138917 |
30 | S>* | No |
ClinGen gnomAD |
|
|
rs755480336 CA5018514 |
30 | S>A | No |
ClinGen ExAC gnomAD |
|
|
CA5018515 rs779491463 |
31 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs185223242 CA5018537 |
33 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5018538 rs757411707 |
34 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs369961548 CA5018539 |
34 | R>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs537741206 CA5018541 |
38 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA373139043 rs1361939679 |
40 | R>S | No |
ClinGen TOPMed |
|
| TCGA novel | 44 | E>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1446075341 CA373139083 |
47 | I>V | No |
ClinGen gnomAD |
|
|
CA5018544 rs200054852 |
48 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018543 rs372499240 |
48 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs189645733 CA5018545 |
50 | C>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1217469432 CA373139116 |
51 | D>E | No |
ClinGen gnomAD |
|
|
CA5018547 rs747973056 |
51 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774224474 CA5018546 |
51 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 54 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5018548 rs146631763 |
55 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5018549 rs773033694 |
58 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373139191 rs1487329918 |
58 | Q>R | No |
ClinGen gnomAD |
|
|
rs760444329 CA5018550 |
60 | I>F | No |
ClinGen ExAC gnomAD |
|
|
CA5018551 rs765891384 |
60 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs776065204 CA5018552 |
66 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373139296 rs1179339387 |
67 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
CA5018553 rs763512887 |
67 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA5018554 rs139224341 |
69 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1177675137 CA373139328 |
70 | Q>H | No |
ClinGen gnomAD |
|
|
rs757649438 CA373139342 CA5018556 |
71 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA373139346 rs1188624507 |
72 | K>E | No |
ClinGen TOPMed |
|
| TCGA novel | 72 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373139385 rs1268786789 |
74 | I>M | No |
ClinGen TOPMed |
|
|
CA5018557 rs369355555 |
74 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373139389 rs1355281119 |
75 | E>K | No |
ClinGen gnomAD |
|
|
CA373139433 rs1200691416 |
77 | P>L | No |
ClinGen TOPMed |
|
|
rs756347295 CA5018559 |
78 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1224047264 CA373139468 |
79 | K>M | No |
ClinGen gnomAD |
|
|
CA373139474 rs1473985906 |
79 | K>N | No |
ClinGen TOPMed gnomAD |
|
|
CA5018560 rs780175690 |
80 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA192365386 rs956242260 |
81 | A>S | No |
ClinGen Ensembl |
|
| TCGA novel | 81 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373139506 rs1273311415 |
82 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA373139503 rs1273311415 |
82 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs143245103 CA5018562 |
82 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA373139605 rs1274913465 |
88 | F>C | No |
ClinGen TOPMed |
|
|
CA5018565 rs747915637 |
89 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1449140247 CA373139928 |
92 | P>A | No |
ClinGen gnomAD |
|
|
CA373139930 rs1449140247 |
92 | P>S | No |
ClinGen gnomAD |
|
|
COSM753667 CA5018584 COSM753668 rs758468204 |
93 | A>T | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs142930707 CA5018585 |
95 | V>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5018586 rs746785385 |
96 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA373139982 rs1383838664 |
97 | F>L | No |
ClinGen gnomAD |
|
|
CA373139998 rs1416539767 |
99 | A>S | No |
ClinGen TOPMed |
|
|
rs745573950 CA5018589 |
100 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs1364155698 CA373140007 |
100 | M>V | No |
ClinGen gnomAD |
|
|
rs769267795 CA5018590 |
101 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs1383014395 CA373140022 |
101 | R>H | No |
ClinGen gnomAD |
|
|
rs775035570 CA5018591 |
103 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373140043 rs1263101405 |
103 | A>V | No |
ClinGen gnomAD |
|
|
COSM214190 CA192366531 rs984195413 |
104 | V>M | breast [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
CA373140051 rs1354929475 |
105 | K>* | No |
ClinGen gnomAD |
|
|
CA192366552 rs895641100 |
108 | G>A | No |
ClinGen TOPMed |
|
|
rs1207381857 CA373140073 |
108 | G>R | No |
ClinGen gnomAD |
|
|
CA373140088 rs1464748860 |
110 | D>E | No |
ClinGen gnomAD |
|
|
rs762301470 CA5018592 |
110 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
CA373140094 rs1187025778 |
111 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1489916463 CA373140115 |
114 | I>T | No |
ClinGen TOPMed |
|
|
rs772570000 CA5018593 |
114 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA5018594 rs773570766 |
115 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs536277060 CA5018595 |
116 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA373140125 rs536277060 |
116 | P>T | No |
ClinGen ExAC gnomAD |
|
|
CA373140142 rs1587524288 |
118 | C>* | No |
ClinGen Ensembl |
|
|
CA373140139 rs1306981086 |
118 | C>Y | No |
ClinGen gnomAD |
|
|
rs766587886 CA5018596 |
119 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373140170 rs753979935 |
122 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs753979935 CA5018597 |
122 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs41304757 CA5018598 |
123 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA192366636 rs963698506 |
127 | S>A | No |
ClinGen Ensembl |
|
|
rs202186814 CA5018599 |
129 | Q>H | No |
ClinGen 1000Genomes ExAC |
|
|
rs1455470939 CA373140278 |
130 | V>A | No |
ClinGen gnomAD |
|
|
rs1387751572 CA373140274 |
130 | V>L | No |
ClinGen gnomAD |
|
|
CA5018600 rs561752787 |
133 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA373140328 rs1383084667 |
134 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs976692554 CA192366699 |
134 | R>I | No |
ClinGen Ensembl |
|
|
CA373140339 rs1270732358 |
134 | R>S | No |
ClinGen TOPMed |
|
|
CA5018626 rs375356805 |
136 | A>T | No |
ClinGen ESP ExAC TOPMed |
|
|
rs148577484 CA5018627 |
137 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1254516963 CA373141272 |
140 | Q>K | No |
ClinGen gnomAD |
|
|
rs1481702227 CA373141276 |
140 | Q>R | No |
ClinGen gnomAD |
|
|
CA5018628 rs779706002 |
141 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs748759131 CA5018630 |
144 | D>N | No |
ClinGen ExAC gnomAD |
|
|
rs748759131 CA5018629 |
144 | D>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1277905792 CA373141345 |
150 | N>H | No |
ClinGen TOPMed |
|
|
COSM1461950 rs142015075 CA192375664 COSM1461949 |
153 | R>* | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP NCI-TCGA TOPMed gnomAD |
|
COSM1108091 CA192375665 rs199823143 COSM1108089 |
153 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs771535995 CA5018633 |
156 | F>C | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 157 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1028410753 CA192375844 |
159 | W>C | No |
ClinGen TOPMed |
|
|
CA192375842 rs771023115 |
159 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
CA373142210 rs1457828421 |
162 | Q>H | No |
ClinGen gnomAD |
|
|
rs776053905 CA5018655 |
166 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs774234584 COSM1636150 COSM1636151 CA5018658 |
168 | R>Q | Variant assessed as Somatic; 0.0 impact. liver [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs41305321 CA5018657 |
168 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs544613435 CA5018659 |
170 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs771866685 CA5018660 |
171 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs1200840999 CA373142401 |
171 | P>S | No |
ClinGen gnomAD |
|
|
CA5018662 rs760657982 |
173 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA373142500 rs1262323203 |
175 | G>A | No |
ClinGen gnomAD |
|
|
CA5018663 rs766152770 |
176 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1187652280 CA373142544 |
177 | I>M | No |
ClinGen gnomAD |
|
|
rs143260336 CA5018664 |
179 | Q>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759044295 CA5018665 |
180 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018666 rs759044295 |
180 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1476752001 CA373142690 |
185 | L>V | No |
ClinGen gnomAD |
|
|
CA192375917 rs940448475 |
186 | A>P | No |
ClinGen gnomAD |
|
|
CA5018669 rs371287650 |
189 | V>L | No |
ClinGen ESP ExAC gnomAD |
|
|
CA5018671 rs530451988 |
190 | F>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
COSM1701017 rs780495634 CA373142856 COSM1701018 |
192 | Q>* | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA5018672 rs780495634 |
192 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA5018673 rs749679991 |
193 | D>E | No |
ClinGen ExAC |
|
| TCGA novel | 194 | G>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373142907 rs1378505027 |
194 | G>A | No |
ClinGen gnomAD |
|
|
CA373142911 rs1563937121 |
195 | Y>H | No |
ClinGen Ensembl |
|
|
rs1341577365 CA373142931 |
196 | Y>H | No |
ClinGen TOPMed |
|
|
CA5018674 rs768708549 |
198 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA192375976 rs1036093594 |
202 | V>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA373143114 rs1423818549 |
205 | D>E | No |
ClinGen gnomAD |
|
|
rs1587533672 CA373143125 |
206 | S>L | No |
ClinGen Ensembl |
|
|
CA5018679 rs61753543 |
208 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA192375989 rs888997704 |
209 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs760606540 CA5018680 |
211 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs770860316 CA5018681 |
213 | G>A | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 214 | L>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs776354014 CA5018682 |
215 | G>D | No |
ClinGen ExAC TOPMed |
|
|
rs201517506 CA5018683 |
216 | I>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 219 | W>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs745839445 CA373143492 |
222 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs745839445 CA5018701 |
222 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA373143633 rs1274018433 |
229 | V>L | No |
ClinGen gnomAD |
|
|
rs766343904 CA192376402 |
230 | M>I | No |
ClinGen TOPMed |
|
|
rs775214589 CA5018703 |
230 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs762599613 CA5018704 |
231 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs896305309 CA373143667 |
231 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs149099252 CA5018705 |
232 | G>D | No |
ClinGen ESP ExAC gnomAD |
|
|
CA373143697 rs1250255749 |
233 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 235 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5018707 rs774527267 |
235 | I>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018706 rs773945957 |
235 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA373143759 rs1246483200 |
237 | M>I | No |
ClinGen gnomAD |
|
|
CA192376428 rs545982690 |
238 | V>M | No |
ClinGen Ensembl |
|
|
rs998617889 CA192376442 |
240 | P>L | No |
ClinGen Ensembl |
|
|
rs373705791 CA5018708 |
240 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5018710 rs143208912 |
241 | Q>H | No |
ClinGen ESP ExAC TOPMed |
|
|
CA373143803 rs1587534338 |
241 | Q>P | No |
ClinGen Ensembl |
|
|
CA5018713 rs765633870 |
243 | I>T | No |
ClinGen ExAC gnomAD |
|
|
rs1587534369 CA373143867 |
245 | Y>* | No |
ClinGen Ensembl |
|
|
rs1052957996 CA192376484 |
245 | Y>H | No |
ClinGen TOPMed |
|
| TCGA novel | 248 | M>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1587534377 CA373143917 |
248 | M>R | No |
ClinGen Ensembl |
|
|
CA373143908 rs1587534371 |
248 | M>V | No |
ClinGen Ensembl |
|
|
CA373143944 rs1587534388 |
250 | K>E | No |
ClinGen Ensembl |
|
|
CA373143960 rs1587534393 |
251 | P>A | No |
ClinGen Ensembl |
|
|
rs867400782 CA373143980 |
252 | H>P | No |
ClinGen Ensembl |
|
|
rs867400782 CA192376491 |
252 | H>R | No |
ClinGen Ensembl |
|
| TCGA novel | 252 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5018716 rs777994072 |
253 | P>R | No |
ClinGen ExAC gnomAD |
|
|
rs1587534424 CA373144039 |
255 | V>G | No |
ClinGen Ensembl |
|
|
CA192376512 rs1023662763 |
255 | V>L | No |
ClinGen Ensembl |
|
|
CA373144044 rs1278613474 |
256 | T>A | No |
ClinGen TOPMed |
|
|
CA373144069 rs1363928435 |
257 | S>C | No |
ClinGen gnomAD |
|
|
rs1297922662 CA373144060 |
257 | S>P | No |
ClinGen gnomAD |
|
|
rs1229084790 CA373144075 |
258 | T>A | No |
ClinGen TOPMed |
|
|
rs1229084790 CA373144072 |
258 | T>P | No |
ClinGen TOPMed |
|
|
CA192376518 rs747053727 |
260 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373144120 rs1359156435 |
260 | I>N | No |
ClinGen gnomAD |
|
|
rs1293303507 CA373144115 |
260 | I>V | No |
ClinGen gnomAD |
|
|
rs1386824174 CA373144139 |
261 | V>M | No |
ClinGen TOPMed |
|
|
CA5018718 rs757298088 |
262 | L>F | No |
ClinGen ExAC gnomAD |
|
|
rs745813050 CA5018720 |
263 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373144174 rs1449080635 |
264 | I>T | No |
ClinGen gnomAD |
|
|
CA192376552 rs1003813807 |
264 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA373144194 rs1186833323 |
266 | K>E | No |
ClinGen gnomAD |
|
|
rs1366661565 CA373144410 |
267 | H>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs377402963 CA5018738 |
268 | L>V | No |
ClinGen ESP ExAC gnomAD |
|
|
rs779887077 CA5018739 |
269 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749277564 CA5018740 |
269 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373144491 rs1410194859 |
271 | V>A | No |
ClinGen TOPMed |
|
|
CA373144489 rs1410194859 |
271 | V>G | No |
ClinGen TOPMed |
|
|
CA373144483 rs1169225031 |
271 | V>L | No |
ClinGen TOPMed |
|
|
CA5018741 rs768547519 |
272 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778911706 CA5018742 |
273 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs747799152 CA5018743 |
275 | G>S | No |
ClinGen ExAC gnomAD |
|
|
rs1394948342 CA373144594 |
277 | F>S | No |
ClinGen gnomAD |
|
|
rs1331557480 CA373144606 |
278 | V>I | No |
ClinGen gnomAD |
|
|
CA5018744 rs771629289 |
279 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs772720976 TCGA novel CA5018745 |
280 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen ExAC TOPMed gnomAD |
|
rs772720976 CA5018746 |
280 | F>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373144683 rs1328936319 |
282 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA5018748 rs142361227 |
284 | G>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1563938209 CA373144732 |
286 | A>T | No |
ClinGen Ensembl |
|
|
rs187410592 CA5018749 |
286 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs764435518 CA5018750 |
287 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs554238047 CA5018751 |
288 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs910377932 CA192377809 |
290 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA5018753 rs199925403 |
292 | D>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1277091687 CA373144807 |
292 | D>N | No |
ClinGen TOPMed |
|
|
CA192377821 rs964554426 |
293 | R>* | No |
ClinGen TOPMed gnomAD |
|
|
CA5018754 rs146504268 |
293 | R>Q | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1465219356 CA373144833 |
294 | A>G | No |
ClinGen gnomAD |
|
|
rs756114734 CA5018755 |
295 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA192377831 rs377554984 |
298 | N>S | No |
ClinGen ESP TOPMed |
|
|
CA5018758 rs755034665 |
299 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA5018759 rs140508190 |
302 | E>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs747971044 CA5018760 |
302 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA5018761 rs771711524 |
303 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA5018764 rs770327588 |
304 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs746718645 CA5018763 |
304 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1205909440 CA373144984 |
306 | T>I | No |
ClinGen gnomAD |
|
|
rs950901885 CA192377864 |
307 | A>T | No |
ClinGen Ensembl |
|
|
CA373145037 rs1433518974 |
310 | F>L | No |
ClinGen TOPMed |
|
|
rs750595584 CA192377876 |
312 | V>A | No |
ClinGen Ensembl |
|
|
rs1267752313 CA373145076 |
314 | E>K | No |
ClinGen gnomAD |
|
|
CA5018767 rs556592191 |
315 | V>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs556592191 CA5018768 |
315 | V>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 316 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1245908877 CA373145124 |
317 | I>T | No |
ClinGen gnomAD |
|
|
CA5018770 rs767964183 |
317 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018772 rs150373174 VAR_069413 |
318 | T>M | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA192377926 rs150445617 |
320 | L>P | No |
ClinGen ESP |
|
|
COSM1294458 CA373145174 rs1368717845 COSM1294457 |
321 | V>A | cervix [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
rs754906830 CA5018775 |
321 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754906830 CA373145167 |
321 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746724369 CA192377957 |
322 | Q>E | No |
ClinGen Ensembl |
|
| TCGA novel | 323 | T>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM1701021 rs138275139 CA5018793 COSM1701022 |
325 | R>C | skin [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs111878998 CA5018794 |
325 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs752662640 CA5018795 |
328 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 329 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5018796 rs149639885 |
330 | L>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA5018800 rs780850748 |
333 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA5018799 rs756807053 |
333 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs745558996 CA5018801 |
334 | K>* | No |
ClinGen ExAC gnomAD |
|
|
rs1181862593 CA373145661 |
334 | K>N | No |
ClinGen gnomAD |
|
| TCGA novel | 335 | K>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1006831058 CA192379506 |
335 | K>N | No |
ClinGen TOPMed |
|
|
CA373145694 rs1361328697 |
336 | Y>C | No |
ClinGen gnomAD |
|
|
rs562089015 CA192379511 |
338 | Q>* | No |
ClinGen gnomAD |
|
|
rs1163308394 CA373145729 |
338 | Q>H | No |
ClinGen gnomAD |
|
|
rs755597568 CA5018802 |
339 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018803 rs779595165 |
340 | V>L | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 341 | G>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1379019937 CA373145770 |
341 | G>E | No |
ClinGen TOPMed |
|
|
CA373145762 rs1227290108 |
341 | G>R | No |
ClinGen TOPMed |
|
|
rs146778663 CA5018804 |
342 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 344 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773392518 CA373145824 |
344 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773392518 COSM1108103 CA5018806 COSM1108101 |
344 | R>Q | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1303491394 CA373145840 |
345 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA5018807 rs747424270 |
346 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018810 rs759890281 |
347 | N>K | No |
ClinGen ExAC gnomAD |
|
|
CA5018809 rs552340071 |
347 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs765397045 CA192379535 |
348 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs185817086 CA5018812 |
349 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs762739076 CA5018813 |
350 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA5018815 rs537657112 |
351 | Q>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1485653028 CA373145901 |
351 | Q>P | No |
ClinGen gnomAD |
|
|
rs1473126244 CA373145911 |
352 | D>E | No |
ClinGen gnomAD |
|
|
rs761633478 CA5018816 |
352 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs1186453366 CA373145907 |
352 | D>H | No |
ClinGen gnomAD |
|
|
rs991574584 CA192379563 |
353 | P>R | No |
ClinGen Ensembl |
|
|
rs1158295945 CA373145919 |
354 | D>H | No |
ClinGen gnomAD |
|
| TCGA novel | 355 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 355 | F>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1406138904 CA373145946 |
357 | Q>H | No |
ClinGen gnomAD |
|
|
rs201983073 CA192380351 |
358 | V>A | No |
ClinGen Ensembl |
|
|
CA5018834 rs774323213 |
358 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed |
|
rs774323213 CA373146362 |
358 | V>L | No |
ClinGen ExAC TOPMed |
|
| TCGA novel | 363 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1297694898 CA373146478 |
363 | L>W | No |
ClinGen gnomAD |
|
|
CA373146577 rs1195712848 |
368 | P>L | No |
ClinGen gnomAD |
|
|
CA5018837 rs750222926 |
370 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018838 rs760265120 |
370 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA192380375 rs960121496 |
373 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
rs200462190 CA5018840 |
374 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs570643968 CA192380403 |
374 | K>R | No |
ClinGen gnomAD |
|
| TCGA novel | 377 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373146698 rs1390830717 |
378 | D>V | No |
ClinGen gnomAD |
|
|
CA192380408 rs965681864 |
379 | K>E | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 379 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373146732 rs1219491441 |
381 | A>T | No |
ClinGen Ensembl |
|
|
CA5018841 rs754480816 |
381 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA373146739 rs1405756062 |
382 | V>M | No |
ClinGen gnomAD |
|
|
rs924145609 CA192380420 |
384 | D>N | No |
ClinGen gnomAD |
|
|
rs1241088294 CA373146784 |
385 | M>V | No |
ClinGen gnomAD |
|
| TCGA novel | 386 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1460703568 CA373146858 CA373146856 |
389 | F>L | No |
ClinGen gnomAD |
|
|
rs7025336 CA192380427 |
390 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA373146868 rs1325373197 |
390 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1320707046 CA373146860 |
390 | E>K | No |
ClinGen gnomAD |
|
|
rs1179246483 CA373146877 |
391 | S>G | No |
ClinGen gnomAD |
|
|
CA5018845 rs781637839 |
391 | S>R | No |
ClinGen ExAC gnomAD |
|
|
VAR_048180 CA5018846 rs3814519 |
395 | A>D | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA192380440 rs780944307 |
396 | K>N | No |
ClinGen Ensembl |
|
|
CA5018868 rs530391630 |
398 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs755158738 CA5018869 |
399 | F>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1433056374 CA373147072 |
399 | F>Y | No |
ClinGen TOPMed |
|
|
rs138520929 CA5018870 |
402 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs749227184 CA192381201 |
406 | P>R | No |
ClinGen Ensembl |
|
|
CA5018873 rs773102797 |
408 | H>L | No |
ClinGen ExAC |
|
|
rs746998837 CA5018874 |
409 | H>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373147201 rs1257934988 |
409 | H>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs567203838 CA5018875 |
410 | N>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA373147226 rs1257873430 |
411 | D>V | No |
ClinGen TOPMed |
|
|
CA373147243 rs1199471599 |
412 | H>Q | No |
ClinGen TOPMed |
|
|
CA373147239 rs1278113146 |
412 | H>R | No |
ClinGen gnomAD |
|
|
rs529985830 CA5018877 |
414 | T>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1320354040 CA373147274 |
415 | F>L | No |
ClinGen TOPMed |
|
|
rs199591033 CA5018878 |
417 | Y>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs199591033 CA373147310 |
417 | Y>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA5018880 rs762519258 |
419 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA192381246 rs763742544 |
420 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018881 rs763742544 |
420 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373147363 CA373147366 rs3780473 |
421 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5018882 rs750948884 |
421 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA192381263 rs915263030 |
423 | T>I | No |
ClinGen Ensembl |
|
|
rs1587540594 CA373147385 |
423 | T>P | No |
ClinGen Ensembl |
|
|
CA192381268 rs946667312 |
425 | A>T | No |
ClinGen Ensembl |
|
|
rs1432137199 CA373147426 |
426 | H>L | No |
ClinGen gnomAD |
|
|
CA373147448 rs1235047042 |
427 | G>D | No |
ClinGen gnomAD |
|
|
CA5018886 rs755178170 |
428 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA373147459 rs1303689442 |
429 | V>M | No |
ClinGen gnomAD |
|
|
rs139154946 CA5018888 |
432 | A>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs139154946 CA5018889 |
432 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
|
CA5018890 rs777891541 |
434 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs113600182 CA192381299 |
436 | S>G | No |
ClinGen Ensembl |
|
|
CA373147589 rs1344276354 |
436 | S>R | No |
ClinGen gnomAD |
|
|
CA5018892 rs770781100 |
441 | S>G | No |
ClinGen ExAC gnomAD |
|
|
COSM1108118 rs776431987 CA5018893 COSM1108116 |
443 | P>L | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA5018896 rs775256231 |
447 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA373147839 rs1391460624 |
448 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs1449494815 CA373147868 |
449 | A>V | No |
ClinGen gnomAD |
|
| TCGA novel | 450 | G>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs762749604 CA5018897 |
450 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1359830714 CA373148862 |
455 | K>T | No |
ClinGen gnomAD |
|
|
rs184849317 CA5018912 |
456 | A>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
COSM487354 CA5018915 rs189305274 COSM487355 |
463 | V>M | kidney [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1271267590 CA373149096 |
464 | M>I | No |
ClinGen TOPMed |
|
|
CA192382368 rs764846746 |
465 | P>S | No |
ClinGen Ensembl |
|
| TCGA novel | 466 | Y>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373149181 rs1317128836 |
467 | I>L | No |
ClinGen gnomAD |
|
|
CA373149215 rs1433553474 |
467 | I>T | No |
ClinGen TOPMed |
|
|
CA373149282 rs1587541854 |
469 | T>P | No |
ClinGen Ensembl |
|
|
rs199873369 CA192382380 |
469 | T>S | No |
ClinGen 1000Genomes |
|
|
CA5018918 rs771652686 |
476 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA5018919 rs776982474 |
477 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs760149257 CA5018920 |
478 | V>I | No |
ClinGen ExAC gnomAD |
|
|
rs905704396 CA192382398 |
479 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA373149519 rs1401474229 |
479 | T>P | No |
ClinGen gnomAD |
|
|
CA373149546 rs1001411180 |
480 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1563941261 CA373149538 |
480 | Y>H | No |
ClinGen Ensembl |
|
|
CA192382403 rs1001411180 |
480 | Y>S | No |
ClinGen TOPMed gnomAD |
|
|
CA5018922 rs150560966 |
481 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 484 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5018925 rs751844533 |
484 | E>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1376838957 CA373149704 |
485 | S>R | No |
ClinGen TOPMed |
|
|
CA373149726 rs1210890102 |
486 | G>E | No |
ClinGen gnomAD |
|
|
CA5018928 rs34630459 VAR_048181 |
486 | G>R | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs779935276 CA5018930 |
488 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA373149778 rs1197681952 |
489 | P>R | No |
ClinGen TOPMed |
|
|
CA192382468 rs373037294 |
489 | P>S | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA5018932 rs768382597 |
493 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1176872544 CA373149870 |
494 | L>V | No |
ClinGen gnomAD |
|
|
rs778399763 CA5018933 |
495 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA373151249 rs1452599489 |
496 | F>S | No |
ClinGen gnomAD |
|
|
rs375879049 CA373151292 |
498 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5018955 rs375879049 |
498 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1279847168 CA373151326 |
499 | V>M | No |
ClinGen TOPMed |
|
|
CA373151389 rs1587543870 |
501 | Y>H | No |
ClinGen Ensembl |
|
|
rs1563942404 CA373151566 |
506 | C>S | No |
ClinGen Ensembl |
|
|
rs775950088 CA5018958 |
507 | I>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5018959 rs775950088 |
507 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs141464328 CA5018961 |
512 | P>H | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1272447112 CA373151880 |
515 | E>V | No |
ClinGen gnomAD |
|
|
CA373151895 rs1340665486 |
516 | P>A | No |
ClinGen gnomAD |
|
|
CA373151931 rs1563942438 |
517 | V>L | No |
ClinGen Ensembl |
|
|
CA5018962 rs41306075 |
519 | E>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA373152091 rs750286577 |
522 | T>I | No |
ClinGen gnomAD |
|
|
CA192384131 rs750286577 |
522 | T>K | No |
ClinGen gnomAD |
|
|
rs1587543947 CA373152131 |
523 | Q>* | No |
ClinGen Ensembl |
|
|
rs773545224 CA5018981 |
524 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA373152415 rs1226376826 |
525 | D>H | No |
ClinGen TOPMed |
|
|
CA5018983 rs376382833 |
526 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5018982 rs376382833 |
526 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1377734523 CA373152504 |
527 | V>I | No |
ClinGen gnomAD |
|
| TCGA novel | 528 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1298359848 CA373152599 |
531 | V>A | No |
ClinGen TOPMed |
|
|
rs1293056334 CA373152644 |
533 | S>A | No |
ClinGen gnomAD |
|
|
rs1338965407 CA373152675 |
534 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs765245218 CA5018986 |
536 | R>G | No |
ClinGen ExAC gnomAD |
|
|
rs752397721 CA5018987 |
541 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed |
|
rs1280319878 CA373152909 |
542 | V>I | No |
ClinGen gnomAD |
|
|
rs948403672 CA192384916 |
543 | H>L | No |
ClinGen TOPMed gnomAD |
|
|
CA373152971 rs1214471885 |
544 | P>S | No |
ClinGen gnomAD |
|
|
CA373153030 rs1392528095 |
546 | T>S | No |
ClinGen TOPMed |
|
|
CA5018990 rs763849839 |
547 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs551232686 CA373153041 |
547 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
COSM1554740 rs551232686 CA5018991 COSM1554741 |
547 | R>Q | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs763849839 CA5018989 |
547 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750337798 CA192384947 |
549 | N>I | No |
ClinGen TOPMed |
|
|
CA373153134 rs1170140041 |
550 | Y>N | No |
ClinGen TOPMed |
|
|
rs932430194 CA192384958 |
551 | L>S | No |
ClinGen Ensembl |
|
|
rs1182113291 CA373153218 |
552 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA373153225 COSM1108125 rs1182113291 COSM1108127 |
552 | A>V | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA373153295 rs201567528 |
555 | P>A | No |
ClinGen TOPMed gnomAD |
|
|
CA5018992 rs147879556 |
555 | P>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA373153306 rs147879556 |
555 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5018993 rs147879556 |
555 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs201567528 CA373153298 |
555 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA192384980 rs201567528 |
555 | P>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1203481656 CA373153326 |
556 | L>* | No |
ClinGen TOPMed |
|
|
CA5018994 rs755397936 |
556 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA192384987 rs934463036 |
558 | I>M | No |
ClinGen TOPMed |
|
|
rs1049919993 CA373153393 |
559 | A>P | No |
ClinGen gnomAD |
|
|
CA192384998 rs1049919993 |
559 | A>S | No |
ClinGen gnomAD |
|
|
CA5018995 rs779444546 |
559 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA373153445 rs1312704297 |
561 | A>T | No |
ClinGen gnomAD |
|
|
CA5018996 rs748651303 |
562 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1329809751 CA373153477 |
563 | A>S | No |
ClinGen gnomAD |
|
|
CA5018999 rs747163796 |
567 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs776806842 COSM1108128 CA5019001 COSM1108130 |
569 | D>N | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs769809176 CA5019003 |
570 | F>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs775480200 CA5019004 |
570 | F>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769809176 CA192385067 |
570 | F>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373153616 rs1289736040 |
571 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA192385073 rs1053641599 |
571 | E>K | No |
ClinGen TOPMed |
|
|
rs762862154 CA5019005 |
573 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs753517552 CA373153683 |
576 | G>* | No |
ClinGen Ensembl |
|
|
rs753517552 CA192385114 |
576 | G>R | No |
ClinGen Ensembl |
|
|
rs747402713 CA5019018 |
577 | V>I | No |
ClinGen ExAC gnomAD |
|
|
CA373154336 rs1265960040 |
579 | A>T | No |
ClinGen gnomAD |
|
|
rs781536310 CA5019020 |
580 | K>M | No |
ClinGen ExAC |
|
|
rs1171616963 CA373154355 |
580 | K>N | No |
ClinGen gnomAD |
|
|
rs73477393 CA5019019 |
580 | K>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA373154391 rs1372888673 |
582 | Q>R | No |
ClinGen gnomAD |
|
|
CA5019021 rs376055682 |
583 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5019022 rs769908972 |
584 | V>I | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 586 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA192386133 rs879591052 |
589 | I>T | No |
ClinGen Ensembl |
|
|
CA373154566 rs1587545997 |
590 | W>S | No |
ClinGen Ensembl |
|
|
CA5019025 rs774908713 |
591 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774091732 CA5019026 |
591 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA192386146 rs774908713 |
591 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373154615 rs1351221697 |
593 | R>G | No |
ClinGen TOPMed |
|
|
rs760311892 CA5019030 |
595 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA5019031 rs765848694 |
595 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs1218790114 CA373154667 |
596 | I>T | No |
ClinGen gnomAD |
|
|
rs188187425 CA192386198 |
598 | A>E | No |
ClinGen 1000Genomes |
|
|
CA373154704 rs758927242 |
599 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5019033 rs758927242 |
599 | V>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5019035 rs752155661 |
600 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA373154710 rs1339305530 |
600 | E>K | No |
ClinGen TOPMed |
|
|
CA5019036 rs757678488 |
601 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA5019037 rs145151491 |
601 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs746031459 CA5019038 |
603 | Y>H | No |
ClinGen ExAC |
|
|
rs1157673817 CA373154875 |
606 | P>L | No |
ClinGen TOPMed |
|
|
rs1162831154 CA373154880 |
607 | G>R | No |
ClinGen gnomAD |
|
|
CA5019041 rs368608810 |
608 | M>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs768760890 CA5019042 |
610 | K>E | No |
ClinGen ExAC gnomAD |
|
|
rs1025882890 CA192386252 |
613 | Y>C | No |
ClinGen TOPMed |
|
| TCGA novel | 614 | Q>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 614 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs982368311 | 619 | V>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA373156144 rs1445451402 |
621 | E>D | No |
ClinGen gnomAD |
|
|
CA373156172 rs1299535351 |
622 | S>R | No |
ClinGen gnomAD |
|
|
CA5019061 rs554654868 |
623 | W>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA373156174 rs1373595065 |
623 | W>R | No |
ClinGen gnomAD |
|
|
rs754106444 CA5019062 |
624 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1563944439 CA373156224 |
625 | A>D | No |
ClinGen Ensembl |
|
|
rs1563944444 CA373156290 |
629 | P>L | No |
ClinGen Ensembl |
|
|
CA5019064 rs779030858 |
632 | K>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 633 | L>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5019066 rs772011252 |
635 | F>L | No |
ClinGen ExAC gnomAD |
|
|
rs1481063532 CA373156397 |
636 | W>* | No |
ClinGen gnomAD |
|
|
rs202008941 CA192387726 |
638 | S>P | No |
ClinGen 1000Genomes |
|
|
CA373156456 rs1236455222 |
640 | S>Y | No |
ClinGen gnomAD |
|
|
CA373156467 rs1455611127 |
641 | T>A | No |
ClinGen gnomAD |
|
|
COSM1108140 CA192387727 COSM1108142 rs770368084 |
641 | T>M | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs770368084 CA373156470 |
641 | T>R | No |
ClinGen TOPMed |
|
|
CA5019067 rs777577329 |
642 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs901784975 CA192387739 |
644 | K>E | No |
ClinGen Ensembl |
|
|
CA373156515 rs189552242 |
644 | K>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA5019069 rs189552242 |
644 | K>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA373156539 rs1462931030 |
646 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
COSM1674447 COSM1674446 CA5019070 rs200941977 |
648 | F>L | large_intestine [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs759323554 CA5019071 |
649 | F>C | No |
ClinGen ExAC gnomAD |
|
|
rs769428525 CA5019072 |
651 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373156624 rs554093149 |
651 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA373156638 rs1440917660 |
652 | L>P | No |
ClinGen gnomAD |
|
|
CA373156757 TCGA novel rs1398393712 |
653 | T>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
NCI-TCGA ClinGen TOPMed |
| TCGA novel | 654 | L>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs745450675 CA5019090 |
658 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA5019091 rs142255667 |
659 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373156836 rs1214446348 |
659 | P>S | No |
ClinGen gnomAD |
|
|
CA373156845 rs1449892479 |
660 | K>E | No |
ClinGen gnomAD |
|
|
CA373156858 rs1217904606 |
660 | K>N | No |
ClinGen gnomAD |
|
|
CA5019092 rs775096741 |
662 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA373156898 rs1477381155 |
663 | V>A | No |
ClinGen gnomAD |
|
|
CA192388655 rs190036940 |
664 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs146168465 CA5019093 |
664 | D>H | No |
ClinGen ESP ExAC TOPMed |
|
|
rs137954533 CA5019095 |
665 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373156939 rs1377505916 |
666 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
rs761310345 CA5019096 |
670 | N>D | No |
ClinGen ExAC gnomAD |
|
|
rs1162227317 CA373157012 |
672 | G>R | No |
ClinGen gnomAD |
|
|
CA373157030 rs1387986702 |
673 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA5019098 rs754214724 |
674 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs149480947 CA192388711 |
675 | V>I | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs559965283 CA192388720 |
676 | T>I | No |
ClinGen Ensembl |
|
|
rs1245832258 CA373157118 |
679 | H>P | No |
ClinGen gnomAD |
|
|
CA192388722 rs143970071 |
679 | H>Y | No |
ClinGen ESP |
|
|
rs765475645 CA5019100 |
680 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA5019102 rs758388830 |
682 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA5019103 rs764295557 |
683 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA373157228 rs1487919951 |
687 | A>S | No |
ClinGen gnomAD |
|
|
CA373157237 rs1214239276 |
688 | R>G | No |
ClinGen gnomAD |
|
|
CA192388777 rs745374398 |
689 | N>I | No |
ClinGen Ensembl |
|
|
rs751450274 CA5019104 |
690 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373136010 rs1379640618 |
691 | P>L | No |
ClinGen TOPMed |
|
|
rs757227454 CA5019105 |
693 | A>G | No |
ClinGen ExAC gnomAD |
|
|
rs1485852366 CA373136027 |
693 | A>T | No |
ClinGen gnomAD |
|
|
CA5019107 rs781080591 |
694 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs756010290 CA5019108 |
694 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs756010290 CA5019109 |
694 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs781080591 CA5019106 |
694 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA192329176 rs148657938 |
695 | Y>C | No |
ClinGen ESP TOPMed |
|
|
rs886721291 CA192329195 |
698 | N>I | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 699 | R>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1423382525 CA373136301 |
701 | L>P | No |
ClinGen gnomAD |
|
|
rs773484032 CA5019169 |
702 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA5019170 rs760667152 |
703 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs766458832 CA5019172 |
704 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373136342 rs1358395100 |
704 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA192330663 rs764574685 |
707 | N>I | No |
ClinGen gnomAD |
|
|
CA5019173 rs753750006 |
708 | S>F | No |
ClinGen ExAC gnomAD |
|
|
COSM3703541 CA373136429 COSM3703540 rs759325876 |
709 | Y>C | liver [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA5019174 rs759325876 |
709 | Y>S | No |
ClinGen ExAC gnomAD |
|
|
CA5019175 rs764953534 |
712 | R>C | Variant assessed as Somatic; 0.0002312 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs376485136 CA5019176 |
712 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA373136469 rs376485136 |
712 | R>P | No |
ClinGen ESP ExAC gnomAD |
|
|
rs758109603 CA5019177 |
713 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA192330709 rs369736600 |
713 | R>Q | No |
ClinGen ESP TOPMed gnomAD |
|
|
rs201438165 CA192330719 |
715 | N>D | No |
ClinGen Ensembl |
|
|
CA373136507 rs1188246221 |
715 | N>S | No |
ClinGen TOPMed |
|
|
rs202070059 CA373136541 |
717 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs202070059 CA5019179 |
717 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs542689519 CA5019180 |
718 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA5019181 rs202244128 |
719 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs769000549 CA5019183 |
721 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
rs749776375 CA5019182 |
721 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA192330766 rs80241842 |
722 | G>E | No |
ClinGen 1000Genomes |
|
| TCGA novel | 726 | N>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA192330797 rs111935283 |
727 | I>T | No |
ClinGen Ensembl |
|
|
CA5019186 rs748369667 COSM1108146 COSM1108148 |
728 | R>C | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs1416025860 CA373136629 |
728 | R>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1176477039 CA373136636 |
729 | L>F | No |
ClinGen gnomAD |
|
|
rs1357658001 CA373136645 |
731 | N>D | No |
ClinGen TOPMed |
|
|
rs773395876 CA5019188 |
737 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA5019189 rs373321398 |
738 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373136703 rs1377005005 |
739 | P>S | No |
ClinGen gnomAD |
|
|
CA373136709 rs1326888949 |
740 | Q>E | No |
ClinGen TOPMed |
|
|
CA5019190 rs770936793 |
740 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs904424538 CA192330877 |
746 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
CA373136748 rs1320222155 |
746 | S>T | No |
ClinGen TOPMed |
|
|
CA373136757 rs1270628433 |
747 | G>A | No |
ClinGen gnomAD |
|
|
rs899896542 CA373136941 |
751 | D>E | No |
ClinGen gnomAD |
|
|
CA373136934 rs1423950935 |
751 | D>N | No |
ClinGen gnomAD |
|
|
rs1477278875 CA373136946 |
752 | V>A | No |
ClinGen gnomAD |
|
|
CA5019218 rs767041812 |
754 | D>V | No |
ClinGen ExAC gnomAD |
|
|
CA5019219 rs749953124 |
755 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5019222 rs147409743 |
758 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs201421085 CA5019221 |
758 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1563947059 CA373136996 |
760 | Q>L | No |
ClinGen Ensembl |
|
|
rs753277923 CA5019223 |
761 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA373137029 rs1027207166 |
765 | P>H | No |
ClinGen TOPMed |
|
|
rs1027207166 CA192333470 |
765 | P>L | No |
ClinGen TOPMed |
|
|
CA373137028 rs1218281501 |
765 | P>S | No |
ClinGen gnomAD |
|
|
CA373137041 rs374624250 |
767 | I>M | No |
ClinGen TOPMed |
|
|
rs1029637272 CA192333476 |
767 | I>T | No |
ClinGen Ensembl |
|
|
CA5019227 rs371291915 COSM1181605 COSM1181604 |
768 | V>I | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA373137050 rs1449768892 |
769 | L>P | No |
ClinGen gnomAD |
|
|
rs1263660565 CA373137057 |
770 | A>V | No |
ClinGen gnomAD |
|
|
CA373137142 rs1162094754 |
775 | G>A | No |
ClinGen gnomAD |
|
|
CA373137138 rs1472878490 |
775 | G>S | No |
ClinGen gnomAD |
|
|
rs769943890 CA5019231 |
777 | G>R | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 777 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5019232 rs779912319 |
779 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA192333526 rs545955861 |
780 | R>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs545955861 CA5019233 |
780 | R>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA192333542 rs747470214 |
780 | R>L | No |
ClinGen TOPMed |
|
|
rs747470214 CA192333538 |
780 | R>Q | No |
ClinGen TOPMed |
|
|
CA5019235 rs774192274 |
781 | D>V | No |
ClinGen ExAC gnomAD |
|
|
rs1316576489 CA373137229 |
783 | A>T | No |
ClinGen gnomAD |
|
|
rs139727791 CA5019236 |
783 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs771452701 CA5019243 |
785 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373137309 rs1286568420 |
787 | P>L | No |
ClinGen gnomAD |
|
|
CA192333586 rs981893736 |
789 | L>R | No |
ClinGen TOPMed |
|
|
CA373138210 rs1382085219 |
793 | K>N | No |
ClinGen gnomAD |
|
|
rs1420153174 CA373138217 |
794 | A>D | No |
ClinGen gnomAD |
|
| TCGA novel | 794 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs375980125 CA5019279 |
795 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs375980125 CA5019278 |
795 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373138225 rs375980125 |
795 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373138251 rs1302996104 |
797 | A>D | No |
ClinGen gnomAD |
|
|
CA5019282 rs369726170 |
798 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5019284 rs555165686 |
800 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1224946358 CA373138302 |
801 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs147876514 CA5019285 |
802 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760856294 CA5019286 |
802 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1306768618 CA373138339 |
803 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA5019287 rs766550080 |
804 | H>Y | No |
ClinGen ExAC gnomAD |
|
|
CA5019288 rs140468249 |
805 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA5019289 rs754994797 |
805 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373138370 rs754994797 |
805 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752573064 CA5019291 |
806 | S>G | No |
ClinGen ExAC gnomAD |
|
|
CA5019293 rs777406462 |
806 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs758417852 CA5019292 |
806 | S>T | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 808 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5019295 rs757147213 |
810 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1026232875 CA192341252 |
813 | V>G | No |
ClinGen TOPMed |
|
|
CA5019297 rs745525671 |
814 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs769428507 CA5019298 |
815 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5019299 rs775128282 |
815 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs748583852 CA5019300 |
816 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA373138535 rs1427481705 |
816 | L>V | No |
ClinGen TOPMed |
|
|
rs1012255074 CA192341299 |
817 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs1490554343 CA373138546 |
817 | E>K | No |
ClinGen TOPMed |
|
|
rs1024954004 CA192341302 |
818 | Y>* | No |
ClinGen Ensembl |
|
|
CA373138583 rs1298040756 |
819 | L>F | No |
ClinGen gnomAD |
|
|
rs1221286676 CA373138598 |
820 | P>T | No |
ClinGen gnomAD |
|
|
rs1323055728 CA373138690 |
823 | N>K | No |
ClinGen gnomAD |
|
|
rs1302329931 CA373138683 |
823 | N>T | No |
ClinGen gnomAD |
|
|
CA192341320 rs200246624 |
824 | A>T | No |
ClinGen 1000Genomes |
|
|
CA5019302 rs773625352 |
825 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA5019301 rs180881368 |
825 | D>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs199640569 CA5019304 |
826 | A>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs760980848 CA5019303 |
826 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA5019305 rs199640569 |
826 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs144050479 CA5019306 |
829 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1428223287 CA373139132 |
830 | T>P | No |
ClinGen gnomAD |
|
|
CA5019307 rs374312972 |
831 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5019309 rs758234936 |
832 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA5019310 rs764049502 |
832 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1028702991 CA192341367 |
834 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA5019311 rs367887952 |
834 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA5019312 rs367887952 |
834 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA192341391 rs749994493 |
836 | T>S | No |
ClinGen Ensembl |
|
| TCGA novel | 837 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1304007343 CA373139246 |
837 | I>V | No |
ClinGen TOPMed |
|
|
CA192341402 rs149168836 |
838 | I>F | No |
ClinGen ESP TOPMed |
|
|
CA5019313 rs781203555 |
839 | I>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs781203555 CA5019314 |
839 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs563271664 CA5019315 |
840 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1345226309 CA373139317 |
841 | E>D | No |
ClinGen gnomAD |
|
|
CA373139307 rs1404182496 |
841 | E>Q | No |
ClinGen TOPMed |
|
|
rs1587562601 CA373139327 |
842 | N>T | No |
ClinGen Ensembl |
|
|
rs917912455 CA192341460 |
843 | L>F | No |
ClinGen TOPMed gnomAD |
|
|
rs917912455 CA373139340 |
843 | L>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1280270807 CA373139355 |
844 | K>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs748793228 CA5019317 |
847 | M>T | No |
ClinGen ExAC gnomAD |
|
|
rs1423173244 CA373139705 |
854 | D>H | No |
ClinGen gnomAD |
|
|
CA373139716 rs1392094269 |
855 | T>S | No |
ClinGen TOPMed |
|
|
CA5019344 rs568296875 CA192342492 |
863 | M>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA5019343 rs199964011 |
863 | M>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1316410829 CA373139774 |
864 | R>K | No |
ClinGen gnomAD |
|
|
rs893822179 CA192342494 |
866 | D>H | No |
ClinGen TOPMed |
|
|
CA5019347 rs761816078 |
867 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs201266375 CA5019348 |
868 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201266375 CA373139799 |
868 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373139806 rs1214870158 |
869 | V>M | No |
ClinGen TOPMed gnomAD |
|
|
rs1279948693 CA373139827 |
872 | T>A | No |
ClinGen gnomAD |
|
|
CA192342525 rs908400175 |
872 | T>I | No |
ClinGen Ensembl |
|
|
CA373139835 rs1203016853 |
873 | Y>C | No |
ClinGen gnomAD |
|
|
rs766094300 CA5019352 |
875 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA5019353 rs753526223 |
876 | N>S | No |
ClinGen ExAC gnomAD |
|
|
COSM1108158 COSM1108160 CA5019357 rs764702759 CA5019355 |
877 | G>R | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA5019356 rs764702759 |
877 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA373139868 rs1181006128 |
879 | I>V | No |
ClinGen gnomAD |
|
|
CA373139886 rs1469896322 |
881 | N>T | No |
ClinGen gnomAD |
|
|
CA5019359 rs746370322 |
883 | M>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756432587 CA5019360 |
884 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA5019361 rs112153542 |
885 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs376675400 CA5019362 |
885 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA373139947 rs1403944134 |
886 | K>E | No |
ClinGen gnomAD |
|
|
rs1403944134 CA373139945 |
886 | K>Q | No |
ClinGen gnomAD |
|
|
CA192342676 rs986055223 CA373139983 |
887 | M>I | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 888 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA5019363 rs769042394 |
889 | K>N | No |
ClinGen ExAC gnomAD |
|
|
CA373140021 rs1203706762 |
890 | K>Q | No |
ClinGen TOPMed gnomAD |
No associated diseases with P21399
5 regional properties for P21399
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Aconitase A/isopropylmalate dehydratase small subunit, swivel domain | 693 - 818 | IPR000573 |
| domain | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain | 63 - 564 | IPR001030 |
| binding_site | Aconitase family, 4Fe-4S cluster binding site | 429 - 445 | IPR018136-1 |
| binding_site | Aconitase family, 4Fe-4S cluster binding site | 495 - 508 | IPR018136-2 |
| domain | Aconitase A, swivel domain | 670 - 839 | IPR044137 |
Functions
| Description | ||
|---|---|---|
| EC Number | 4.2.1.3 | Hydro-lyases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
6 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
| extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
7 GO annotations of molecular function
| Name | Definition |
|---|---|
| 3 iron, 4 sulfur cluster binding | Binding to a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing. |
| 4 iron, 4 sulfur cluster binding | Binding to a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
| aconitate hydratase activity | Catalysis of the reaction: citrate = isocitrate. The reaction occurs in two steps: (1) citrate = cis-aconitate + H2O, (2) cis-aconitate + H2O = isocitrate. This reaction is the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate. |
| citrate dehydratase activity | Catalysis of the reaction: citrate = cis-aconitate + H2O. |
| iron-responsive element binding | Binding to an iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins. |
| metal ion binding | Binding to a metal ion. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
7 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular iron ion homeostasis | Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. |
| citrate metabolic process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. |
| intestinal absorption | Any process in which nutrients are taken up from the contents of the intestine. |
| post-embryonic development | The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. |
| regulation of translation | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. |
| response to iron(II) ion | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron(II) ion stimulus. |
| tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSNPFAHLAE | PLDPVQPGKK | FFNLNKLEDS | RYGRLPFSIR | VLLEAAIRNC | DEFLVKKQDI |
| 70 | 80 | 90 | 100 | 110 | 120 |
| ENILHWNVTQ | HKNIEVPFKP | ARVILQDFTG | VPAVVDFAAM | RDAVKKLGGD | PEKINPVCPA |
| 130 | 140 | 150 | 160 | 170 | 180 |
| DLVIDHSIQV | DFNRRADSLQ | KNQDLEFERN | RERFEFLKWG | SQAFHNMRII | PPGSGIIHQV |
| 190 | 200 | 210 | 220 | 230 | 240 |
| NLEYLARVVF | DQDGYYYPDS | LVGTDSHTTM | IDGLGILGWG | VGGIEAEAVM | LGQPISMVLP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| QVIGYRLMGK | PHPLVTSTDI | VLTITKHLRQ | VGVVGKFVEF | FGPGVAQLSI | ADRATIANMC |
| 310 | 320 | 330 | 340 | 350 | 360 |
| PEYGATAAFF | PVDEVSITYL | VQTGRDEEKL | KYIKKYLQAV | GMFRDFNDPS | QDPDFTQVVE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| LDLKTVVPCC | SGPKRPQDKV | AVSDMKKDFE | SCLGAKQGFK | GFQVAPEHHN | DHKTFIYDNT |
| 430 | 440 | 450 | 460 | 470 | 480 |
| EFTLAHGSVV | IAAITSCTNT | SNPSVMLGAG | LLAKKAVDAG | LNVMPYIKTS | LSPGSGVVTY |
| 490 | 500 | 510 | 520 | 530 | 540 |
| YLQESGVMPY | LSQLGFDVVG | YGCMTCIGNS | GPLPEPVVEA | ITQGDLVAVG | VLSGNRNFEG |
| 550 | 560 | 570 | 580 | 590 | 600 |
| RVHPNTRANY | LASPPLVIAY | AIAGTIRIDF | EKEPLGVNAK | GQQVFLKDIW | PTRDEIQAVE |
| 610 | 620 | 630 | 640 | 650 | 660 |
| RQYVIPGMFK | EVYQKIETVN | ESWNALATPS | DKLFFWNSKS | TYIKSPPFFE | NLTLDLQPPK |
| 670 | 680 | 690 | 700 | 710 | 720 |
| SIVDAYVLLN | LGDSVTTDHI | SPAGNIARNS | PAARYLTNRG | LTPREFNSYG | SRRGNDAVMA |
| 730 | 740 | 750 | 760 | 770 | 780 |
| RGTFANIRLL | NRFLNKQAPQ | TIHLPSGEIL | DVFDAAERYQ | QAGLPLIVLA | GKEYGAGSSR |
| 790 | 800 | 810 | 820 | 830 | 840 |
| DWAAKGPFLL | GIKAVLAESY | ERIHRSNLVG | MGVIPLEYLP | GENADALGLT | GQERYTIIIP |
| 850 | 860 | 870 | 880 | ||
| ENLKPQMKVQ | VKLDTGKTFQ | AVMRFDTDVE | LTYFLNGGIL | NYMIRKMAK |