O88689
Gene name |
Pcdha4 |
Protein name |
Protocadherin alpha-4 |
Names |
PCDH-alpha-4 |
Species |
Mus musculus (Mouse) |
KEGG Pathway |
mmu:12936 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
3 structures for O88689
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 1WUZ | NMR | - | A | 27-129 | PDB |
| 5DZW | X-ray | 243 A | A | 30-450 | PDB |
| AF-O88689-F1 | Predicted | AlphaFoldDB |
50 variants for O88689
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| rs24885023 | 11 | S>P | No | EVA | |
| rs236455201 | 89 | R>W | No | EVA | |
| rs3389497423 | 122 | E>G | No | EVA | |
| rs3389497378 | 137 | Q>* | No | EVA | |
| rs3389497454 | 203 | E>D | No | EVA | |
| rs3389508447 | 227 | Q>H | No | EVA | |
| rs3389503511 | 233 | L>Q | No | EVA | |
| rs24885031 | 239 | A>S | No | EVA | |
| rs24885032 | 262 | V>I | No | EVA | |
| rs24885034 | 276 | D>N | No | EVA | |
| rs24885035 | 358 | P>L | No | EVA | |
| rs3389488555 | 384 | Q>H | No | EVA | |
| rs24885036 | 391 | S>N | No | EVA | |
| rs24885037 | 420 | D>G | No | EVA | |
| rs3389503521 | 427 | A>V | No | EVA | |
| rs3389492763 | 459 | E>K | No | EVA | |
| rs3389499961 | 468 | N>I | No | EVA | |
| rs585317379 | 480 | M>V | No | EVA | |
| rs3389476001 | 495 | V>M | No | EVA | |
| rs3389475942 | 530 | L>M | No | EVA | |
| rs24885043 | 532 | R>Q | No | EVA | |
| rs3389510787 | 559 | N>K | No | EVA | |
| rs3389495853 | 586 | G>S | No | EVA | |
| rs3389497406 | 611 | L>M | No | EVA | |
| rs24885047 | 612 | Q>K | No | EVA | |
| rs24885048 | 616 | G>S | No | EVA | |
| rs24885049 | 624 | V>I | No | EVA | |
| rs24885050 | 625 | G>S | No | EVA | |
| rs3408253013 | 629 | G>A | No | EVA | |
| rs3408431419 | 629 | G>R | No | EVA | |
| rs24885053 | 636 | I>A | No | EVA | |
| rs257527861 | 636 | I>T | No | EVA | |
| rs13489528 | 636 | I>V | No | EVA | |
| rs3389405583 | 639 | E>G | No | EVA | |
| rs3389497398 | 657 | P>S | No | EVA | |
| rs13489529 | 661 | V>F | No | EVA | |
| rs3389496231 | 685 | S>C | No | EVA | |
| rs250448853 | 686 | V>A | No | EVA | |
| rs3389488593 | 687 | T>I | No | EVA | |
| rs1131814018 | 688 | H>D | No | EVA | |
| rs1132656963 | 688 | H>P | No | EVA | |
| rs24885055 | 696 | V>I | No | EVA | |
| rs13489530 | 752 | Q>H | No | EVA | |
| rs3388438143 | 759 | C>Y | No | EVA | |
| rs3389503526 | 767 | T>N | No | EVA | |
| rs3389508446 | 784 | D>N | No | EVA | |
| rs3389497431 | 786 | L>* | No | EVA | |
| rs3389492780 | 828 | G>D | No | EVA | |
| rs3389491513 | 836 | W>C | No | EVA | |
| rs3389488566 | 869 | G>* | No | EVA |
No associated diseases with O88689
10 regional properties for O88689
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Cadherin-like | 20 - 133 | IPR002126-1 |
| domain | Cadherin-like | 134 - 242 | IPR002126-2 |
| domain | Cadherin-like | 242 - 350 | IPR002126-3 |
| domain | Cadherin-like | 351 - 565 | IPR002126-4 |
| domain | Cadherin-like | 581 - 681 | IPR002126-5 |
| domain | Cadherin, N-terminal | 30 - 111 | IPR013164 |
| conserved_site | Cadherin conserved site | 230 - 240 | IPR020894-1 |
| conserved_site | Cadherin conserved site | 443 - 453 | IPR020894-2 |
| conserved_site | Cadherin conserved site | 553 - 563 | IPR020894-3 |
| domain | Cadherin, C-terminal catenin-binding domain | 797 - 930 | IPR031904 |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). |
| integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
| synapse | The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| calcium ion binding | Binding to a calcium ion (Ca2+). |
| identical protein binding | Binding to an identical protein or proteins. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| cell adhesion | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. |
| homophilic cell adhesion via plasma membrane adhesion molecules | The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9UN74 | PCDHA4 | Protocadherin alpha-4 | Homo sapiens (Human) | PR |
| Q8VHF2 | Cdhr5 | Cadherin-related family member 5 | Mus musculus (Mouse) | PR |
| Q91Y11 | Pcdha9 | Protocadherin alpha-9 | Mus musculus (Mouse) | PR |
| Q767I8 | Pcdha4 | Protocadherin alpha-4 | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEFSWGSGQE | SQRLLLSFLL | LAIWEAGNSQ | IHYSIPEEAK | HGTFVGRIAQ | DLGLELTELV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PRLFRVASKD | RGDLLEVNLQ | NGILFVNSRI | DREELCGRSA | ECSIHLEVIV | DRPLQVFHVE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| VEVRDINDNP | PRFPTTQKNL | FIAESRPLDT | WFPLEGASDA | DIGINAVLTY | RLSPNDYFSL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EKPSNDERVK | GLGLVLRKSL | DREETPEIIL | VLTVTDGGKP | ELTGSVQLLI | TVLDANDNAP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VFDRSLYTVK | LPENVPNGTL | VVKVNASDLD | EGVNGDIMYS | FSTDISPNVK | YKFHIDPVSG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| EIIVKGYIDF | EECKSYEILI | EGIDKGQLPL | SGHCKVIVQV | EDINDNVPEL | EFKSLSLPIR |
| 370 | 380 | 390 | 400 | 410 | 420 |
| ENSPVGTVIA | LISVSDRDTG | VNGQVTCSLT | SHVPFKLVST | FKNYYSLVLD | SALDRETTAD |
| 430 | 440 | 450 | 460 | 470 | 480 |
| YKVVVTARDG | GSPSLWATAS | VSVEVADVND | NAPVFAQPEY | TVFVKENNPP | GAHIFTVSAM |
| 490 | 500 | 510 | 520 | 530 | 540 |
| DADAQENALV | SYSLVERRVG | ERLLSSYVSV | HAESGKVFAL | QPLDHEELEL | LRFQVSARDA |
| 550 | 560 | 570 | 580 | 590 | 600 |
| GVPALGSNVT | LQVFVLDEND | NAPTLLEPEA | GVSGGIVSRL | VSRSVGAGHV | VAKVRAVDAD |
| 610 | 620 | 630 | 640 | 650 | 660 |
| SGYNAWLSYE | LQSSEGNSRS | LFRVGLYTGE | ISTTRILDEA | DSPRQRLLVL | VKDHGDPAMI |
| 670 | 680 | 690 | 700 | 710 | 720 |
| VTATVLVSLV | ENGPVPKAPS | RVSTSVTHSE | ASLVDVNVYL | IIAICAVSSL | LVLTLLLYTA |
| 730 | 740 | 750 | 760 | 770 | 780 |
| LRCSTVPSES | VCGPPKPVMV | CSSAVGSWSY | SQQRRQRVCS | GEYPPKTDLM | AFSPSLSDSR |
| 790 | 800 | 810 | 820 | 830 | 840 |
| DREDQLQSAE | DSSGKPRQPN | PDWRYSASLR | AGMHSSVHLE | EAGILRAGPG | GPDQQWPTVS |
| 850 | 860 | 870 | 880 | 890 | 900 |
| SATPEPEAGE | VSPPVGAGVN | SNSWTFKYGP | GNPKQSGPGE | LPDKFIIPGS | PAIISIRQEP |
| 910 | 920 | 930 | 940 | ||
| ANNQIDKSDF | ITFGKKEETK | KKKKKKKGNK | TQEKKEKGNS | TTDNSDQ |