Q9SMV7
PR
Gene name |
MSH7 (MSH6-2, At3g24495, MOB24.2) |
Protein name |
DNA mismatch repair protein MSH7 |
Names |
AtMSH7, MutS protein homolog 7 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G24495 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SMV7
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SMV7-F1 | Predicted | AlphaFoldDB |
95 variants for Q9SMV7
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH10944674 | 14 | P>T | No | 1000Genomes | |
| tmp_3_8918041_C_T | 16 | A>T | No | 1000Genomes | |
| ENSVATH02193855 | 20 | K>E | No | 1000Genomes | |
| ENSVATH05904416 | 27 | A>V | No | 1000Genomes | |
| tmp_3_8917999_C_A | 30 | G>C | No | 1000Genomes | |
| tmp_3_8917969_T_G | 40 | N>H | No | 1000Genomes | |
| ENSVATH10944671 | 52 | V>L | No | 1000Genomes | |
| tmp_3_8917913_T_A | 58 | K>N | No | 1000Genomes | |
| ENSVATH00345559 | 62 | E>D | No | 1000Genomes | |
| ENSVATH02193854 | 79 | P>T | No | 1000Genomes | |
| ENSVATH10944670 | 85 | A>P | No | 1000Genomes | |
| tmp_3_8917827_G_A | 87 | S>F | No | 1000Genomes | |
| tmp_3_8917821_C_G | 89 | G>A | No | 1000Genomes | |
| tmp_3_8917818_T_A | 90 | D>V | No | 1000Genomes | |
| tmp_3_8917816_C_T | 91 | A>T | No | 1000Genomes | |
| ENSVATH10944669 | 92 | S>L | No | 1000Genomes | |
| ENSVATH05904414 | 105 | V>D | No | 1000Genomes | |
| ENSVATH05904413 | 110 | C>Y | No | 1000Genomes | |
| tmp_3_8917753_C_T | 112 | G>R | No | 1000Genomes | |
| tmp_3_8917602_G_A | 121 | P>L | No | 1000Genomes | |
| tmp_3_8917532_T_G | 144 | K>N | No | 1000Genomes | |
| ENSVATH00345558 | 170 | G>D | No | 1000Genomes | |
| ENSVATH10944668 | 177 | T>I | No | 1000Genomes | |
| tmp_3_8917398_C_A | 189 | R>L | No | 1000Genomes | |
| ENSVATH10944667 | 197 | F>L | No | 1000Genomes | |
| ENSVATH05904408 | 217 | P>L | No | 1000Genomes | |
| tmp_3_8917296_T_G | 223 | K>T | No | 1000Genomes | |
| tmp_3_8917285_C_G | 227 | E>Q | No | 1000Genomes | |
| tmp_3_8917281_C_T | 228 | G>E | No | 1000Genomes | |
| tmp_3_8917255_A_T | 237 | S>T | No | 1000Genomes | |
| tmp_3_8917225_G_A | 247 | P>S | No | 1000Genomes | |
| ENSVATH10944666 | 255 | K>N | No | 1000Genomes | |
| tmp_3_8917111_C_T | 285 | V>M | No | 1000Genomes | |
| tmp_3_8916140_G_A | 378 | A>V | No | 1000Genomes | |
| tmp_3_8916091_T_G | 394 | K>N | No | 1000Genomes | |
| tmp_3_8915632_T_A | 397 | K>N | No | 1000Genomes | |
| ENSVATH02193843 | 398 | M>I | No | 1000Genomes | |
| ENSVATH10944615 | 421 | V>I | No | 1000Genomes | |
| ENSVATH05904395 | 439 | Q>H | No | 1000Genomes | |
| ENSVATH10944602 | 449 | S>G | No | 1000Genomes | |
| ENSVATH10944601 | 463 | Y>F | No | 1000Genomes | |
| tmp_3_8915233_G_A | 464 | T>M | No | 1000Genomes | |
| tmp_3_8915100_C_G | 474 | A>P | No | 1000Genomes | |
| ENSVATH10944598 | 478 | Q>H | No | 1000Genomes | |
| ENSVATH10944597 | 481 | G>R | No | 1000Genomes | |
| ENSVATH00345546 | 502 | S>F | No | 1000Genomes | |
| ENSVATH05904389 | 505 | W>L | No | 1000Genomes | |
| ENSVATH05904390 | 505 | W>R | No | 1000Genomes | |
| tmp_3_8915000_C_A | 507 | C>F | No | 1000Genomes | |
| ENSVATH02193839 | 519 | L>H | No | 1000Genomes | |
| ENSVATH13993504 | 533 | K>Q | No | 1000Genomes | |
| tmp_3_8914820_G_T | 540 | H>N | No | 1000Genomes | |
| tmp_3_8914811_T_A | 543 | I>F | No | 1000Genomes | |
| ENSVATH10944595 | 570 | C>S | No | 1000Genomes | |
| ENSVATH02193837 | 649 | V>I | No | 1000Genomes | |
| ENSVATH00345545 | 650 | R>Q | No | 1000Genomes | |
| tmp_3_8914357_A_G | 655 | V>A | No | 1000Genomes | |
| ENSVATH00345544 | 655 | V>L | No | 1000Genomes | |
| tmp_3_8914130_T_C | 683 | I>V | No | 1000Genomes | |
| tmp_3_8914104_C_A | 691 | K>N | No | 1000Genomes | |
| tmp_3_8914105_T_G | 691 | K>T | No | 1000Genomes | |
| tmp_3_8914079_A_T | 700 | Y>N | No | 1000Genomes | |
| ENSVATH00345543 | 715 | E>Q | No | 1000Genomes | |
| ENSVATH05904381 | 727 | S>G | No | 1000Genomes | |
| tmp_3_8913995_C_T | 728 | D>N | No | 1000Genomes | |
| ENSVATH00345542 | 732 | Y>C | No | 1000Genomes | |
| ENSVATH00345542 | 732 | Y>F | No | 1000Genomes | |
| tmp_3_8913798_T_G | 735 | Q>H | No | 1000Genomes | |
| ENSVATH00345541 | 736 | D>E | No | 1000Genomes | |
| tmp_3_8913797_C_T | 736 | D>N | No | 1000Genomes | |
| ENSVATH13993500 | 741 | N>K | No | 1000Genomes | |
| tmp_3_8913758_T_C | 749 | I>V | No | 1000Genomes | |
| tmp_3_8913743_C_T | 754 | E>K | No | 1000Genomes | |
| ENSVATH10944547 | 783 | A>D | No | 1000Genomes | |
| ENSVATH02193831 | 787 | A>V | No | 1000Genomes | |
| tmp_3_8913638_G_C | 789 | P>A | No | 1000Genomes | |
| tmp_3_8913518_G_A | 829 | P>S | No | 1000Genomes | |
| tmp_3_8913281_G_A | 880 | P>L | No | 1000Genomes | |
| tmp_3_8913278_C_G | 881 | C>S | No | 1000Genomes | |
| ENSVATH00345538 | 886 | I>M | No | 1000Genomes | |
| tmp_3_8913093_G_A | 914 | T>I | No | 1000Genomes | |
| tmp_3_8912821_G_A | 976 | A>V | No | 1000Genomes | |
| tmp_3_8912809_C_T | 980 | R>H | No | 1000Genomes | |
| tmp_3_8912807_C_G | 981 | V>L | No | 1000Genomes | |
| ENSVATH10944521 | 983 | S>L | No | 1000Genomes | |
| tmp_3_8912770_C_T | 993 | R>K | No | 1000Genomes | |
| ENSVATH05904374 | 999 | R>G | No | 1000Genomes | |
| tmp_3_8912738_C_T | 1004 | D>N | No | 1000Genomes | |
| tmp_3_8912711_C_T | 1013 | E>K | No | 1000Genomes | |
| ENSVATH05904373 | 1040 | G>V | No | 1000Genomes | |
| ENSVATH10944518 | 1084 | A>T | No | 1000Genomes | |
| ENSVATH05904370 | 1084 | A>V | No | 1000Genomes | |
| ENSVATH13993496 | 1091 | Y>S | No | 1000Genomes | |
| tmp_3_8912474_C_T | 1092 | D>N | No | 1000Genomes | |
| ENSVATH10944517 | 1102 | K>R | No | 1000Genomes |
No associated diseases with Q9SMV7
4 regional properties for Q9SMV7
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | DNA mismatch repair protein MutS, C-terminal | 846 - 1045 | IPR000432 |
| domain | DNA mismatch repair protein MutS-like, N-terminal | 270 - 380 | IPR007695 |
| domain | DNA mismatch repair protein MutS, core | 558 - 822 | IPR007696 |
| domain | DNA mismatch repair protein MutS, connector domain | 390 - 540 | IPR007860 |
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| MutSalpha complex | A heterodimer involved in the recognition and repair of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MSH2 and MSH6. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| ATP-dependent DNA damage sensor activity | A molecule that recognises toxic DNA structures, and initiates a signalling response, driven by ATP hydrolysis. |
| double-stranded DNA binding | Binding to double-stranded DNA. |
| mismatched DNA binding | Binding to a double-stranded DNA region containing one or more mismatches. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MQRQRSILSF | FQKPTAATTK | GLVSGDAASG | GGGSGGPRFN | VKEGDAKGDA | SVRFAVSKSV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| DEVRGTDTPP | EKVPRRVLPS | GFKPAESAGD | ASSLFSNIMH | KFVKVDDRDC | SGERSREDVV |
| 130 | 140 | 150 | 160 | 170 | 180 |
| PLNDSSLCMK | ANDVIPQFRS | NNGKTQERNH | AFSFSGRAEL | RSVEDIGVDG | DVPGPETPGM |
| 190 | 200 | 210 | 220 | 230 | 240 |
| RPRASRLKRV | LEDEMTFKED | KVPVLDSNKR | LKMLQDPVCG | EKKEVNEGTK | FEWLESSRIR |
| 250 | 260 | 270 | 280 | 290 | 300 |
| DANRRRPDDP | LYDRKTLHIP | PDVFKKMSAS | QKQYWSVKSE | YMDIVLFFKV | GKFYELYELD |
| 310 | 320 | 330 | 340 | 350 | 360 |
| AELGHKELDW | KMTMSGVGKC | RQVGISESGI | DEAVQKLLAR | GYKVGRIEQL | ETSDQAKARG |
| 370 | 380 | 390 | 400 | 410 | 420 |
| ANTIIPRKLV | QVLTPSTASE | GNIGPDAVHL | LAIKEIKMEL | QKCSTVYGFA | FVDCAALRFW |
| 430 | 440 | 450 | 460 | 470 | 480 |
| VGSISDDASC | AALGALLMQV | SPKEVLYDSK | GLSREAQKAL | RKYTLTGSTA | VQLAPVPQVM |
| 490 | 500 | 510 | 520 | 530 | 540 |
| GDTDAAGVRN | IIESNGYFKG | SSESWNCAVD | GLNECDVALS | ALGELINHLS | RLKLEDVLKH |
| 550 | 560 | 570 | 580 | 590 | 600 |
| GDIFPYQVYR | GCLRIDGQTM | VNLEIFNNSC | DGGPSGTLYK | YLDNCVSPTG | KRLLRNWICH |
| 610 | 620 | 630 | 640 | 650 | 660 |
| PLKDVESINK | RLDVVEEFTA | NSESMQITGQ | YLHKLPDLER | LLGRIKSSVR | SSASVLPALL |
| 670 | 680 | 690 | 700 | 710 | 720 |
| GKKVLKQRVK | AFGQIVKGFR | SGIDLLLALQ | KESNMMSLLY | KLCKLPILVG | KSGLELFLSQ |
| 730 | 740 | 750 | 760 | 770 | 780 |
| FEAAIDSDFP | NYQNQDVTDE | NAETLTILIE | LFIERATQWS | EVIHTISCLD | VLRSFAIAAS |
| 790 | 800 | 810 | 820 | 830 | 840 |
| LSAGSMARPV | IFPESEATDQ | NQKTKGPILK | IQGLWHPFAV | AADGQLPVPN | DILLGEARRS |
| 850 | 860 | 870 | 880 | 890 | 900 |
| SGSIHPRSLL | LTGPNMGGKS | TLLRATCLAV | IFAQLGCYVP | CESCEISLVD | TIFTRLGASD |
| 910 | 920 | 930 | 940 | 950 | 960 |
| RIMTGESTFL | VECTETASVL | QNATQDSLVI | LDELGRGTST | FDGYAIAYSV | FRHLVEKVQC |
| 970 | 980 | 990 | 1000 | 1010 | 1020 |
| RMLFATHYHP | LTKEFASHPR | VTSKHMACAF | KSRSDYQPRG | CDQDLVFLYR | LTEGACPESY |
| 1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
| GLQVALMAGI | PNQVVETASG | AAQAMKRSIG | ENFKSSELRS | EFSSLHEDWL | KSLVGISRVA |
| 1090 | 1100 | ||||
| HNNAPIGEDD | YDTLFCLWHE | IKSSYCVPK |