Q9SKN5
PR
Gene name |
ARF10 (At2g28350, T1B3.13) |
Protein name |
Auxin response factor 10 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT2G28350 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SKN5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SKN5-F1 | Predicted | AlphaFoldDB |
48 variants for Q9SKN5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH05612576 | 2 | E>K | No | 1000Genomes | |
| ENSVATH05612577 | 37 | T>K | No | 1000Genomes | |
| tmp_2_12114455_C_T | 42 | A>V | No | 1000Genomes | |
| tmp_2_12114479_G_A | 50 | R>H | No | 1000Genomes | |
| tmp_2_12114520_T_C | 64 | F>L | No | 1000Genomes | |
| tmp_2_12114598_G_A | 90 | E>K | No | 1000Genomes | |
| ENSVATH01913969 | 100 | P>S | No | 1000Genomes | |
| ENSVATH05612578 | 101 | S>P | No | 1000Genomes | |
| tmp_2_12114652_G_A | 108 | G>S | No | 1000Genomes | |
| ENSVATH00252287 | 147 | S>T | No | 1000Genomes | |
| ENSVATH01913971 | 157 | A>S | No | 1000Genomes | |
| tmp_2_12114979_A_C | 217 | K>Q | No | 1000Genomes | |
| tmp_2_12114982_C_T | 218 | R>C | No | 1000Genomes | |
| ENSVATH05612581 | 223 | S>Y | No | 1000Genomes | |
| ENSVATH01913972 | 225 | A>V | No | 1000Genomes | |
| ENSVATH05612584 | 246 | T>I | No | 1000Genomes | |
| tmp_2_12115124_C_A | 265 | A>D | No | 1000Genomes | |
| ENSVATH05612586 | 271 | V>A | No | 1000Genomes | |
| ENSVATH13446963 | 282 | A>E | No | 1000Genomes | |
| ENSVATH01913973 | 282 | A>T | No | 1000Genomes | |
| tmp_2_12115195_G_A | 289 | V>I | No | 1000Genomes | |
| ENSVATH14563884 | 292 | Y>* | No | 1000Genomes | |
| ENSVATH14563883 | 292 | Y>S | No | 1000Genomes | |
| tmp_2_12115362_A_C | 344 | Q>H | No | 1000Genomes | |
| tmp_2_12115360_C_A | 344 | Q>K | No | 1000Genomes | |
| tmp_2_12115398_G_T | 356 | W>C | No | 1000Genomes | |
| tmp_2_12115397_G_T | 356 | W>L | No | 1000Genomes | |
| ENSVATH05612588 | 388 | T>A | No | 1000Genomes | |
| tmp_2_12115616_A_T | 402 | I>F | No | 1000Genomes | |
| ENSVATH00252291 | 411 | H>D | strain: cv. Ag-0, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1, cv. CVi-0, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Sorbo, cv. Wassilewskija, cv. Wei-0 and cv. Wt-5 [UniProt] | No | 1000Genomes |
| ENSVATH14563895 | 412 | G>S | No | 1000Genomes | |
| ENSVATH13446986 | 432 | C>Y | No | 1000Genomes | |
| ENSVATH01913977 | 473 | G>S | strain: cv. Nd-1 [UniProt] | No | 1000Genomes |
| 475 | N>del | strain: cv. Bay-0, cv. Ga-0, cv. Ms-0 and cv. Oy-0 [UniProt] | No | ||
| tmp_2_12115917_G_A | 502 | S>N | No | 1000Genomes | |
| tmp_2_12115961_G_A | 517 | V>I | No | 1000Genomes | |
| ENSVATH01913978 | 559 | E>Q | No | 1000Genomes | |
| ENSVATH01913981 | 574 | S>G | No | 1000Genomes | |
| tmp_2_12116139_A_T | 576 | Q>L | No | 1000Genomes | |
| ENSVATH13446989 | 617 | I>L | No | 1000Genomes | |
| ENSVATH05612589 | 625 | T>A | No | 1000Genomes | |
| tmp_2_12116331_G_A | 640 | G>E | No | 1000Genomes | |
| ENSVATH00252298 | 664 | N>D | No | 1000Genomes | |
| tmp_2_12116487_A_G | 664 | N>S | No | 1000Genomes | |
| tmp_2_12116590_G_A | 669 | W>* | No | 1000Genomes | |
| tmp_2_12116609_G_A | 676 | G>S | No | 1000Genomes | |
| tmp_2_12116618_G_A | 679 | G>S | No | 1000Genomes | |
| ENSVATH13446994 | 685 | K>N | No | 1000Genomes |
No associated diseases with Q9SKN5
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| DNA-binding transcription factor activity | A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| miRNA binding | Binding to a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes. |
12 GO annotations of biological process
| Name | Definition |
|---|---|
| abscisic acid-activated signaling pathway | The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. |
| auxin-activated signaling pathway | The series of molecular signals generated by the binding of the plant hormone auxin to a receptor, and ending with modulation of a downstream cellular process, e.g. transcription. |
| cell division | The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. |
| developmental growth | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. |
| fruit development | The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. |
| leaf development | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. |
| pattern specification process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. |
| petal development | The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure. |
| regulation of anthocyanin biosynthetic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. |
| response to carbohydrate | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. |
| root cap development | The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant. |
| sepal development | The process whose specific outcome is the progression of the sepal over time, from its formation to the mature structure. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEQEKSLDPQ | LWHACAGSMV | QIPSLNSTVF | YFAQGHTEHA | HAPPDFHAPR | VPPLILCRVV |
| 70 | 80 | 90 | 100 | 110 | 120 |
| SVKFLADAET | DEVFAKITLL | PLPGNDLDLE | NDAVLGLTPP | SSDGNGNGKE | KPASFAKTLT |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QSDANNGGGF | SVPRYCAETI | FPRLDYSAEP | PVQTVIAKDI | HGETWKFRHI | YRGTPRRHLL |
| 190 | 200 | 210 | 220 | 230 | 240 |
| TTGWSTFVNQ | KKLIAGDSIV | FLRSESGDLC | VGIRRAKRGG | LGSNAGSDNP | YPGFSGFLRD |
| 250 | 260 | 270 | 280 | 290 | 300 |
| DESTTTTSKL | MMMKRNGNND | GNAAATGRVR | VEAVAEAVAR | AACGQAFEVV | YYPRASTPEF |
| 310 | 320 | 330 | 340 | 350 | 360 |
| CVKAADVRSA | MRIRWCSGMR | FKMAFETEDS | SRISWFMGTV | SAVQVADPIR | WPNSPWRLLQ |
| 370 | 380 | 390 | 400 | 410 | 420 |
| VAWDEPDLLQ | NVKRVSPWLV | ELVSNMPTIH | LSPFSPRKKI | RIPQPFEFPF | HGTKFPIFSP |
| 430 | 440 | 450 | 460 | 470 | 480 |
| GFANNGGGES | MCYLSNDNNN | APAGIQGARQ | AQQLFGSPSP | SLLSDLNLSS | YTGNNKLHSP |
| 490 | 500 | 510 | 520 | 530 | 540 |
| AMFLSSFNPR | HHHYQARDSE | NSNNISCSLT | MGNPAMVQDK | KKSVGSVKTH | QFVLFGQPIL |
| 550 | 560 | 570 | 580 | 590 | 600 |
| TEQQVMNRKR | FLEEEAEAEE | EKGLVARGLT | WNYSLQGLET | GHCKVFMESE | DVGRTLDLSV |
| 610 | 620 | 630 | 640 | 650 | 660 |
| IGSYQELYRK | LAEMFHIEER | SDLLTHVVYR | DANGVIKRIG | DEPFSDFMKA | TKRLTIKMDI |
| 670 | 680 | 690 | |||
| GGDNVRKTWI | TGIRTGENGI | DASTKTGPLS | IFA |