Q9SD81
Gene name |
GDPD6 |
Protein name |
Glycerophosphodiester phosphodiesterase GDPD6 |
Names |
Glycerophosphodiester phosphodiesterase 6, ATGDPD6 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G08030 |
EC number |
3.1.4.46: Phosphoric diester hydrolases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9SD81
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9SD81-F1 | Predicted | AlphaFoldDB |
32 variants for Q9SD81
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH00611705 | 18 | N>D | No | 1000Genomes | |
| ENSVATH00611704 | 18 | N>K | No | 1000Genomes | |
| tmp_5_2576627_G_T | 23 | P>T | No | 1000Genomes | |
| ENSVATH06939532 | 40 | Q>H | No | 1000Genomes | |
| ENSVATH03036635 | 58 | E>* | No | 1000Genomes | |
| tmp_5_2576507_C_T | 63 | A>T | No | 1000Genomes | |
| ENSVATH00611699 | 74 | F>L | No | 1000Genomes | |
| tmp_5_2576343_C_T | 93 | V>I | No | 1000Genomes | |
| ENSVATH06939529 | 111 | K>* | No | 1000Genomes | |
| ENSVATH06939523 | 130 | T>I | No | 1000Genomes | |
| tmp_5_2576144_T_G | 130 | T>P | No | 1000Genomes | |
| ENSVATH10646150 | 133 | E>K | No | 1000Genomes | |
| ENSVATH00611698 | 141 | Q>* | No | 1000Genomes | |
| ENSVATH00611697 | 142 | R>M | No | 1000Genomes | |
| ENSVATH06939522 | 149 | Q>K | No | 1000Genomes | |
| tmp_5_2576069_G_A | 155 | P>S | No | 1000Genomes | |
| ENSVATH06939521 | 156 | I>N | No | 1000Genomes | |
| ENSVATH10646149 | 160 | D>E | No | 1000Genomes | |
| ENSVATH06939520 | 168 | D>E | No | 1000Genomes | |
| ENSVATH00611696 | 174 | G>A | No | 1000Genomes | |
| ENSVATH10646121 | 189 | V>L | No | 1000Genomes | |
| ENSVATH06939517 | 199 | D>E | No | 1000Genomes | |
| ENSVATH06939515 | 203 | E>G | No | 1000Genomes | |
| ENSVATH10646119 | 209 | G>E | No | 1000Genomes | |
| tmp_5_2575746_G_T | 232 | T>N | No | 1000Genomes | |
| ENSVATH03036632 | 235 | V>I | No | 1000Genomes | |
| tmp_5_2575732_T_C | 237 | I>V | No | 1000Genomes | |
| tmp_5_2575716_T_A | 242 | D>V | No | 1000Genomes | |
| tmp_5_2575535_G_T | 277 | P>Q | No | 1000Genomes | |
| ENSVATH10646074 | 320 | R>H | No | 1000Genomes | |
| tmp_5_2575292_G_T | 327 | H>N | No | 1000Genomes | |
| ENSVATH06939509 | 372 | Q>K | No | 1000Genomes |
No associated diseases with Q9SD81
1 regional properties for Q9SD81
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Glycerophosphodiester phosphodiesterase domain | 44 - 362 | IPR030395 |
Functions
| Description | ||
|---|---|---|
| EC Number | 3.1.4.46 | Phosphoric diester hydrolases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| glycerophosphodiester phosphodiesterase activity | Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| glycerol metabolic process | The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. |
| lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAFKYLLPLL | LLSLLVANCA | SRPLYRLPSE | AKHATKKPLQ | TSRPYNLAHR | GSNGELPEET |
| 70 | 80 | 90 | 100 | 110 | 120 |
| APAYMRAIEE | GADFIETDIL | SSKDGVLICH | HDVNLDDTTD | VADHKEFADR | KRTYEVQGMN |
| 130 | 140 | 150 | 160 | 170 | 180 |
| MTGFFTVDFT | LKELKTLGAK | QRYPFRDQQY | NGKFPIITFD | EYISIALDAP | RVVGIYPEIK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| NPVFMNQQVK | WADGKKFEDK | FVETLKKYGY | KGSYLSEDWL | KQPIFIQSFA | ATSLVYISNM |
| 250 | 260 | 270 | 280 | 290 | 300 |
| TDSPKLFLID | DVTILTEDTN | KTYAEITSDA | YLDYIKPYVI | GIGPWKDTIV | PVNNNRLMTP |
| 310 | 320 | 330 | 340 | 350 | 360 |
| TDLVARAHSR | NLQVHPYTYR | NENQFLHLEF | NQDPYLEYDY | WLNKIGVDGL | FTDFTGSLHN |
| 370 | |||||
| YQELKSPLPQ |