Q9LV93
Gene name |
ABCF5 (GCN5, At5g64840, MXK3.6) |
Protein name |
ABC transporter F family member 5 |
Names |
ABC transporter ABCF.5, AtABCF5, GCN20-type ATP-binding cassette protein GCN5 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G64840 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9LV93
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9LV93-F1 | Predicted | AlphaFoldDB |
23 variants for Q9LV93
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH00751806 | 6 | N>H | No | 1000Genomes | |
| ENSVATH12932411 | 22 | T>S | No | 1000Genomes | |
| ENSVATH03475621 | 33 | S>P | No | 1000Genomes | |
| ENSVATH03475620 | 37 | N>I | No | 1000Genomes | |
| ENSVATH07479984 | 38 | P>L | No | 1000Genomes | |
| ENSVATH03475619 | 41 | D>E | No | 1000Genomes | |
| ENSVATH14648502 | 42 | I>M | No | 1000Genomes | |
| ENSVATH00751805 | 44 | T>I | No | 1000Genomes | |
| tmp_5_25919524_G_A | 57 | S>F | No | 1000Genomes | |
| ENSVATH07479981 | 81 | K>Q | No | 1000Genomes | |
| tmp_5_25919237_T_A | 153 | N>Y | No | 1000Genomes | |
| tmp_5_25919214_A_C | 160 | N>K | No | 1000Genomes | |
| tmp_5_25919132_C_T | 188 | E>K | No | 1000Genomes | |
| tmp_5_25919099_C_T | 199 | V>I | No | 1000Genomes | |
| tmp_5_25918984_G_C | 237 | A>G | No | 1000Genomes | |
| tmp_5_25918985_C_A | 237 | A>S | No | 1000Genomes | |
| ENSVATH07479978 | 249 | A>T | No | 1000Genomes | |
| ENSVATH07479977 | 253 | A>S | No | 1000Genomes | |
| ENSVATH07479973 | 333 | V>M | No | 1000Genomes | |
| ENSVATH00751797 | 456 | L>I | No | 1000Genomes | |
| ENSVATH12932383 | 481 | V>I | No | 1000Genomes | |
| ENSVATH07479964 | 560 | T>K | No | 1000Genomes | |
| tmp_5_25917077_A_T | 653 | V>E | No | 1000Genomes |
No associated diseases with Q9LV93
7 regional properties for Q9LV93
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | ABC transporter-like, ATP-binding domain | 98 - 356 | IPR003439-1 |
| domain | ABC transporter-like, ATP-binding domain | 425 - 640 | IPR003439-2 |
| domain | AAA+ ATPase domain | 122 - 337 | IPR003593-1 |
| domain | AAA+ ATPase domain | 449 - 617 | IPR003593-2 |
| conserved_site | ABC transporter-like, conserved site | 260 - 274 | IPR017871-1 |
| conserved_site | ABC transporter-like, conserved site | 544 - 558 | IPR017871-2 |
| domain | ABC-transporter extension domain | 327 - 414 | IPR032781 |
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| response to nematode | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode. |
3 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MGLSTNLHSL | DLRSTFFTGL | RTSPIPSNFI | KISSISNPRR | DISTIRAQVS | TISLETSVKQ |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RQDEIESLFS | KQPSQQDSDR | KRNGKSSKNG | ASGISSGVKL | ENIRKSYKGV | TVLKDVTWEV |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KRGEKVGLVG | VNGAGKTTQL | RIITGQEEPD | SGNVIKAKPN | MKVAFLSQEF | EVSMSKTVRE |
| 190 | 200 | 210 | 220 | 230 | 240 |
| EFMTAFKEEM | EITEKLEKVQ | KAIEGSVDDL | DLMGRLLDEF | DLLQRRAQAV | NLDSVDAKIS |
| 250 | 260 | 270 | 280 | 290 | 300 |
| KLMPELGFAP | EDADRLVASF | SGGWQMRMSL | GKILLQDPDL | LLLDEPTNHL | DLDTIEWLEG |
| 310 | 320 | 330 | 340 | 350 | 360 |
| YLQKQDVPMV | IISHDRAFLD | QLCTKIVETE | MGVSRTFEGN | YSQYVISKAE | WIETQNAAWE |
| 370 | 380 | 390 | 400 | 410 | 420 |
| KQQKDIDSTK | DLIARLGAGA | NSGRASTAEK | KLEKLQEQEL | IEKPFQRKQM | KIRFPERGTS |
| 430 | 440 | 450 | 460 | 470 | 480 |
| GRSVVNVKNI | DFGFEDKMLF | KKANLSIERG | EKIAILGPNG | CGKSTLLKLI | MGLEKPVKGE |
| 490 | 500 | 510 | 520 | 530 | 540 |
| VILGEHNVLP | NYFEQNQAEV | LDLDKTVLET | VCEAAEDWRS | DDIKGLLGRC | NFKADMLDRK |
| 550 | 560 | 570 | 580 | 590 | 600 |
| VSLLSGGEKA | RLAFCKFMVT | PSTLLVLDEP | TNHLDIPSKE | MLEEAINEYQ | GTVIAVSHDR |
| 610 | 620 | 630 | 640 | 650 | 660 |
| YFIKQIVNRV | IEVEDGCLED | YAGDYNYYLE | KNLDARTKEL | EREAELEEKA | PKVKAKSKMS |
| 670 | 680 | 690 | |||
| KAEKEARKKQ | KMQAFQQAKQ | KSKASKNSKR | WN |