Q8W566
Gene name |
At3g15140 (F4B12.5) |
Protein name |
Uncharacterized exonuclease domain-containing protein At3g15140 |
Names |
|
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT3G15140 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q8W566
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q8W566-F1 | Predicted | AlphaFoldDB |
24 variants for Q8W566
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_3_5101713_G_A | 2 | A>V | No | 1000Genomes | |
| ENSVATH10688319 | 3 | S>T | No | 1000Genomes | |
| ENSVATH13922077 | 11 | S>P | No | 1000Genomes | |
| tmp_3_5101675_T_C | 15 | I>V | No | 1000Genomes | |
| ENSVATH00324303 | 17 | P>R | No | 1000Genomes | |
| ENSVATH10688316 | 27 | A>T | No | 1000Genomes | |
| ENSVATH10688315 | 33 | H>R | No | 1000Genomes | |
| ENSVATH05834641 | 67 | T>N | No | 1000Genomes | |
| tmp_3_5101503_T_C | 72 | E>G | No | 1000Genomes | |
| ENSVATH05834636 | 94 | M>T | No | 1000Genomes | |
| tmp_3_5101138_T_C | 95 | D>G | No | 1000Genomes | |
| ENSVATH05834635 | 127 | N>K | No | 1000Genomes | |
| ENSVATH05834634 | 128 | F>I | No | 1000Genomes | |
| ENSVATH13922075 | 145 | I>M | No | 1000Genomes | |
| tmp_3_5100623_C_T | 178 | E>K | No | 1000Genomes | |
| tmp_3_5100284_A_T | 206 | V>D | No | 1000Genomes | |
| ENSVATH00324298 | 220 | W>G | No | 1000Genomes | |
| ENSVATH02146660 | 223 | N>K | No | 1000Genomes | |
| ENSVATH05834624 | 241 | E>D | No | 1000Genomes | |
| ENSVATH05834623 | 244 | V>I | No | 1000Genomes | |
| tmp_3_5100017_C_G | 263 | V>L | No | 1000Genomes | |
| tmp_3_5099846_T_C | 294 | I>V | No | 1000Genomes | |
| ENSVATH05834619 | 304 | V>L | No | 1000Genomes | |
| ENSVATH05834619 | 304 | V>M | No | 1000Genomes |
No associated diseases with Q8W566
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| 3'-5'-exoribonuclease activity | Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule. |
| endoribonuclease activity, producing 5'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. |
| metal ion binding | Binding to a metal ion. |
| nucleic acid binding | Binding to a nucleic acid. |
2 GO annotations of biological process
| Name | Definition |
|---|---|
| exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Exonucleolytic digestion of a pre-rRNA molecule to generate the mature 3'-end of a 5.8S rRNA molecule derived from an originally tricistronic pre-rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript. |
| post-transcriptional gene silencing by RNA | A posttranscriptional gene silencing pathway in which regulatory RNAs elicit silencing of specific target genes, either by mRNA destabilization or inhibition of translation. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q8IV48 | ERI1 | 3'-5' exoribonuclease 1 | Homo sapiens (Human) | PR |
| Q7TMF2 | Eri1 | 3'-5' exoribonuclease 1 | Mus musculus (Mouse) | PR |
| Q5FVR4 | Eri1 | 3'-5' exoribonuclease 1 | Rattus norvegicus (Rat) | PR |
| O44406 | eri-1 | 3'-5' exonuclease eri-1 | Caenorhabditis elegans | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MASAFSAFRV | SLSRISPFRD | TRFSYPATLA | LAHTKRIMCN | SSHSVSPSPS | PSDFSSSSSS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| SSSSPSTFSL | METSENARWR | PMCLYYTHGK | CTKMDDPAHL | EIFNHDCSKE | LRVAAADLER |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KKSQEFNFFL | VIDLEGKVEI | LEFPILIVDA | KTMEVVDLFH | RFVRPTKMSE | QAINKYIEGK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| YGELGVDRVW | HDTAIPFKQV | VEEFEVWLAE | HDLWDKDTDW | GLNDAAFVTC | GNWDIKTKIP |
| 250 | 260 | 270 | 280 | 290 | 300 |
| EQCVVSNINL | PPYFMEWINL | KDVYLNFYGR | EARGMVSMMR | QCGIKLMGSH | HLGIDDTKNI |
| 310 | 320 | 330 | |||
| TRVVQRMLSE | GAVLKLTARR | SKSNMRNVEF | LFKNRIK |