Q8N5A5
Gene name |
ZGPAT (GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP) |
Protein name |
Zinc finger CCCH-type with G patch domain-containing protein |
Names |
G patch domain-containing protein 6, Zinc finger CCCH domain-containing protein 9, Zinc finger and G patch domain-containing protein |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:84619 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
2 structures for Q8N5A5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 4II1 | X-ray | 265 A | A/B/C/D | 120-268 | PDB |
| AF-Q8N5A5-F1 | Predicted | AlphaFoldDB |
520 variants for Q8N5A5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA409713759 rs1164405126 |
2 | D>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1427831274 CA409713763 |
3 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs145783963 CA9967142 |
4 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1278883426 CA409713779 |
5 | S>G | No |
ClinGen TOPMed |
|
|
rs779358644 CA9967143 |
5 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1391948073 CA409713786 |
6 | L>V | No |
ClinGen gnomAD |
|
|
CA9967144 rs746215830 |
7 | E>G | No |
ClinGen ExAC gnomAD |
|
|
rs373759526 CA317544088 |
8 | S>L | No |
ClinGen ESP |
|
|
rs954385455 CA317544091 |
9 | A>P | No |
ClinGen TOPMed |
|
|
CA9967146 rs780587975 |
9 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs907563076 CA317544099 |
12 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA9967149 rs776191646 |
13 | Y>F | No |
ClinGen ExAC gnomAD |
|
|
CA9967151 rs769739125 |
14 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs769739125 CA317544105 |
14 | R>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs961903105 CA317544110 |
14 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA409713834 rs961903105 |
14 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
CA9967153 rs762898001 |
16 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
CA409713857 rs1447959530 |
18 | Q>P | No |
ClinGen gnomAD |
|
|
rs1168016979 CA409713875 |
20 | V>A | No |
ClinGen gnomAD |
|
|
CA409713871 rs1360034196 |
20 | V>L | No |
ClinGen TOPMed |
|
|
rs774132992 CA9967155 |
23 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967157 rs760833365 |
27 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA409713924 rs1337225910 |
29 | D>H | No |
ClinGen gnomAD |
|
|
rs1169821948 CA409713928 |
29 | D>V | No |
ClinGen TOPMed |
|
|
rs529460229 CA317544133 |
30 | S>L | No |
ClinGen 1000Genomes |
|
|
rs1444515879 CA409713953 |
33 | Q>P | No |
ClinGen TOPMed |
|
|
CA9967159 rs753950895 |
34 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1307523731 CA409713981 |
37 | R>L | No |
ClinGen gnomAD |
|
|
CA317544143 rs948891851 |
38 | Q>* | No |
ClinGen Ensembl |
|
|
rs750848676 CA9967162 |
41 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750848676 CA409714005 |
41 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1344925425 CA409714007 |
42 | D>N | No |
ClinGen gnomAD |
|
|
rs759005591 CA409714018 |
43 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA9967163 rs759005591 |
43 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA317544152 rs1046427918 |
44 | K>N | No |
ClinGen Ensembl |
|
|
rs780499990 CA9967164 |
46 | L>V | No |
ClinGen ExAC gnomAD |
|
|
CA409714044 rs1456953260 |
47 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs747435623 CA9967165 |
47 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA9967168 rs371170725 |
52 | A>T | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA317544158 rs867435294 |
53 | S>R | No |
ClinGen Ensembl |
|
|
rs375314362 CA9967170 |
54 | L>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967171 rs569465757 |
55 | V>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs772808601 CA9967172 |
56 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs1287874569 CA409714099 |
57 | V>I | No |
ClinGen gnomAD |
|
|
CA409714106 rs1383341821 |
58 | R>G | No |
ClinGen gnomAD |
|
| TCGA novel | 59 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759396847 CA9967176 |
60 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs1568780570 CA409714130 |
61 | S>N | No |
ClinGen Ensembl |
|
|
CA9967179 rs1291212 CA409714133 VAR_025539 |
61 | S>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD UniProt dbSNP |
|
|
CA409714140 rs1327468399 |
62 | L>F | No |
ClinGen gnomAD |
|
|
CA409714137 rs1379599118 |
62 | L>S | No |
ClinGen TOPMed |
|
|
CA409714154 rs1261465207 |
65 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs1189536015 CA409714160 |
66 | L>M | No |
ClinGen gnomAD |
|
|
rs1266823721 CA409714162 |
66 | L>P | No |
ClinGen gnomAD |
|
|
CA409714172 rs1379587131 |
67 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA9967180 rs139922283 |
68 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409714181 rs1200011026 |
69 | E>Q | No |
ClinGen gnomAD |
|
|
rs765193445 CA9967181 |
70 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs757829163 CA317544188 |
71 | P>L | No |
ClinGen Ensembl |
|
|
CA9967182 rs149372468 |
72 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1413181 rs1345412182 CA409714208 |
73 | R>H | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs1345412182 CA409714207 |
73 | R>L | No |
ClinGen gnomAD |
|
|
COSM1483848 rs201544347 CA317544198 |
76 | D>N | Variant assessed as Somatic; impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
CA317544200 rs201544347 |
76 | D>Y | No |
ClinGen gnomAD |
|
|
CA409714234 rs1568780758 |
77 | A>D | No |
ClinGen Ensembl |
|
|
CA317544203 rs946948047 |
78 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs767059625 CA409714253 |
80 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA9967184 rs767059625 |
80 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs189722588 CA9967185 |
81 | A>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
COSM379940 rs368081824 CA317544213 |
83 | R>Q | lung [Cosmic] | No |
ClinGen cosmic curated ESP TOPMed gnomAD |
|
CA9967188 rs747712703 |
85 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777085092 CA9967190 |
87 | T>A | No |
ClinGen ExAC gnomAD |
|
|
rs748859108 CA9967191 |
87 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs770854458 CA9967192 |
88 | E>* | No |
ClinGen ExAC gnomAD |
|
|
rs750873972 CA317544233 |
94 | A>G | No |
ClinGen TOPMed |
|
|
CA9967194 rs778865073 |
94 | A>P | No |
ClinGen ExAC gnomAD |
|
|
CA9967193 rs778865073 |
94 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs771717176 CA9967195 |
96 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA409714354 rs374989957 |
97 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967196 rs374989957 |
97 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967197 rs761874875 |
97 | R>L | No |
ClinGen ExAC gnomAD |
|
|
rs1424673979 CA409714362 |
98 | G>E | No |
ClinGen gnomAD |
|
|
CA409714365 rs1601309096 |
99 | S>A | No |
ClinGen Ensembl |
|
|
CA409714367 rs951663826 |
99 | S>C | No |
ClinGen TOPMed gnomAD |
|
|
rs951663826 CA317544242 |
99 | S>F | No |
ClinGen TOPMed gnomAD |
|
|
CA409714369 rs1205334713 |
100 | G>R | No |
ClinGen TOPMed |
|
|
rs1487866324 CA409714374 |
101 | S>P | No |
ClinGen TOPMed |
|
|
rs1162268879 CA409714387 |
102 | E>D | No |
ClinGen Ensembl |
|
|
CA409714385 rs1375928536 |
102 | E>V | No |
ClinGen gnomAD |
|
|
CA409714399 rs1601309254 |
104 | V>G | No |
ClinGen Ensembl |
|
| TCGA novel | 104 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1314560277 CA409714394 |
104 | V>L | No |
ClinGen gnomAD |
|
|
CA9967201 rs766969464 |
105 | P>A | No |
ClinGen ExAC gnomAD |
|
|
CA317544262 rs6089764 |
105 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967202 rs6089764 |
105 | P>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760116753 CA9967203 |
107 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409714415 rs1352492171 |
107 | A>V | No |
ClinGen TOPMed |
|
|
rs1203688447 CA409714424 |
109 | A>T | No |
ClinGen gnomAD |
|
|
CA9967205 COSM3423828 rs753115313 |
109 | A>V | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA409714431 rs540416144 |
110 | G>A | No |
ClinGen TOPMed gnomAD |
|
|
rs540416144 CA317544276 |
110 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
rs755704901 CA9967206 |
110 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1164914477 CA409714444 |
112 | E>G | No |
ClinGen gnomAD |
|
|
rs756811660 CA9967209 |
113 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967210 rs778419808 |
114 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967211 rs745767181 |
115 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1157324893 CA409714464 |
116 | G>C | No |
ClinGen TOPMed |
|
|
CA409714467 rs1356803434 |
116 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1383776668 CA409714471 |
117 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1336558716 CA409714470 |
117 | G>R | No |
ClinGen gnomAD |
|
|
rs1383776668 CA409714473 |
117 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1295454060 CA409714486 |
119 | E>G | No |
ClinGen gnomAD |
|
|
rs1295454060 CA409714487 |
119 | E>V | No |
ClinGen gnomAD |
|
|
rs1338776231 CA409714494 |
120 | E>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1338776231 CA409714495 |
120 | E>V | No |
ClinGen TOPMed gnomAD |
|
|
CA409714498 rs1215257805 |
121 | E>* | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 121 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409714499 rs1215257805 |
121 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs769874588 CA9967217 |
123 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1201524234 CA409714527 |
125 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA409714540 rs1461465507 |
126 | E>G | No |
ClinGen gnomAD |
|
| TCGA novel | 127 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs771090985 CA9967220 |
127 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1568781410 CA409714550 |
128 | E>* | No |
ClinGen Ensembl |
|
|
CA9967221 rs774573345 |
128 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA409714560 rs1170721385 |
129 | L>R | No |
ClinGen gnomAD |
|
|
rs759900871 CA9967222 |
129 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1413319083 CA409714574 |
131 | G>E | No |
ClinGen gnomAD |
|
|
CA409714571 rs1422261982 |
131 | G>W | No |
ClinGen gnomAD |
|
|
CA409714577 rs1601309740 |
132 | T>S | No |
ClinGen Ensembl |
|
|
CA9967223 rs768125394 |
133 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs1387875490 CA409714612 |
137 | P>L | No |
ClinGen TOPMed |
|
|
rs1318722516 CA409714615 |
138 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1459191785 CA409714627 |
139 | Y>C | No |
ClinGen TOPMed |
|
|
rs753443508 CA9967227 |
140 | S>N | No |
ClinGen ExAC gnomAD |
|
|
rs1389810697 CA409714641 |
141 | S>F | No |
ClinGen TOPMed |
|
|
rs778327803 CA9967229 |
144 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317544328 rs200800929 |
146 | E>* | No |
ClinGen Ensembl |
|
|
rs749964788 CA9967230 |
147 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1328097086 CA409714686 |
148 | H>R | No |
ClinGen gnomAD |
|
|
CA409714683 rs1375430117 |
148 | H>Y | No |
ClinGen TOPMed |
|
| TCGA novel | 149 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409714703 rs1200297330 |
150 | A>V | No |
ClinGen TOPMed |
|
|
CA317544336 rs1053269807 |
151 | M>I | No |
ClinGen Ensembl |
|
| TCGA novel | 151 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
COSM578463 rs1014505451 CA317544334 |
151 | M>V | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA409714721 rs780078001 |
153 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs780078001 CA9967232 |
153 | V>G | No |
ClinGen ExAC gnomAD |
|
|
rs1281618053 CA409714717 |
153 | V>M | No |
ClinGen gnomAD |
|
|
CA9967234 rs754770242 |
155 | T>R | No |
ClinGen ExAC gnomAD |
|
|
rs781162866 CA9967235 |
158 | A>T | No |
ClinGen ExAC |
|
|
rs749451851 CA9967236 |
159 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA317544348 rs961727987 |
161 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1186574771 CA409714779 |
162 | S>L | No |
ClinGen TOPMed |
|
|
CA317544350 rs771287246 |
163 | A>P | No |
ClinGen ExAC gnomAD |
|
|
rs771287246 CA9967237 |
163 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA409714781 rs1157265529 |
163 | A>V | No |
ClinGen gnomAD |
|
|
rs978398393 CA317544359 |
164 | G>R | No |
ClinGen Ensembl |
|
|
CA409714788 rs1401554044 |
164 | G>V | No |
ClinGen TOPMed gnomAD |
|
|
CA409714792 rs1601310114 |
165 | V>G | No |
ClinGen Ensembl |
|
|
CA9967242 rs776116149 |
166 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA9967241 rs776116149 |
166 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA317544367 rs904679294 |
169 | Y>F | No |
ClinGen Ensembl |
|
|
rs904679294 CA409714814 |
169 | Y>S | No |
ClinGen Ensembl |
|
|
rs764405178 CA409714819 |
170 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1601310202 CA409714826 |
171 | Y>S | No |
ClinGen Ensembl |
|
|
rs1234140191 CA409714833 |
172 | P>S | No |
ClinGen TOPMed |
|
|
CA409714837 rs1601310269 |
173 | T>P | No |
ClinGen Ensembl |
|
|
CA9967247 rs749898178 |
174 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1568781859 CA409714845 COSM1751563 |
174 | H>Y | urinary_tract [Cosmic] | No |
ClinGen cosmic curated Ensembl |
|
rs757973946 CA9967248 |
175 | K>N | No |
ClinGen ExAC gnomAD |
|
|
rs751473921 CA9967250 |
178 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967253 rs748012028 |
179 | P>L | No |
ClinGen ExAC gnomAD |
|
|
CA9967252 rs781072286 |
179 | P>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 179 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs377575906 CA409714887 |
181 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs148690027 CA9967256 |
181 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs148690027 CA409714890 |
181 | P>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs377575906 CA9967255 |
181 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs775466771 CA409714907 |
184 | L>M | No |
ClinGen ExAC gnomAD |
|
|
rs747483402 CA9967259 |
186 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA409714924 rs1388493773 |
186 | G>V | No |
ClinGen gnomAD |
|
|
rs1326567226 CA409714927 |
187 | K>* | No |
ClinGen gnomAD |
|
| TCGA novel | 187 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409714929 rs1334905385 |
187 | K>R | No |
ClinGen gnomAD |
|
|
rs1279133546 CA409714933 |
188 | C>S | No |
ClinGen gnomAD |
|
|
rs1239529129 CA409714936 |
188 | C>Y | No |
ClinGen gnomAD |
|
|
CA9967260 rs769165453 |
189 | R>C | No |
ClinGen ExAC gnomAD |
|
|
CA409714945 rs1244590395 |
189 | R>H | No |
ClinGen gnomAD |
|
|
rs762233986 CA9967262 |
192 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA317544419 rs1026213217 |
194 | C>S | No |
ClinGen Ensembl |
|
|
CA409716623 rs1262569979 |
201 | V>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA409716619 rs1262569979 |
201 | V>M | No |
ClinGen gnomAD |
|
|
CA409716644 rs1430412432 |
202 | V>A | No |
ClinGen gnomAD |
|
|
rs1568801331 CA409716638 |
202 | V>F | No |
ClinGen Ensembl |
|
|
CA409716689 COSM345166 rs1427133276 |
205 | D>N | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
|
CA409716723 rs1333509517 |
206 | E>V | No |
ClinGen TOPMed |
|
|
CA409716745 rs1479951317 |
208 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA9967288 rs767542214 |
208 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752635917 CA9967289 COSM578462 |
211 | Q>* | lung [Cosmic] | No |
ClinGen cosmic curated ExAC |
|
rs760730273 CA9967290 |
211 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs903150759 CA409716852 |
213 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs903150759 CA317494213 |
213 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
CA317494216 rs775512091 |
215 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
|
CA9967291 rs142241981 |
217 | S>F | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9967293 rs758633303 |
220 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs374721226 CA9967296 |
221 | G>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs374721226 CA9967297 |
221 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs748587525 CA9967298 |
222 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA409718122 rs748587525 |
222 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs199550529 CA9967299 |
223 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs199550529 CA409718128 |
223 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA409718142 rs1347607184 |
223 | A>V | No |
ClinGen gnomAD |
|
|
CA317494263 rs996126477 |
226 | A>P | No |
ClinGen Ensembl |
|
|
CA409718194 rs1486858508 |
228 | H>Y | No |
ClinGen gnomAD |
|
|
rs1251644183 CA409718217 |
229 | Q>H | No |
ClinGen TOPMed |
|
|
rs774192812 CA9967304 |
230 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967302 rs770583665 |
230 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs775149586 CA9967306 |
232 | L>H | No |
ClinGen ExAC gnomAD |
|
|
rs140325582 CA9967308 |
234 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs776481460 CA9967309 |
235 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317494289 rs987183707 |
236 | A>V | No |
ClinGen Ensembl |
|
|
CA9967310 rs145256068 |
237 | R>C | Variant assessed as Somatic; 4.911e-05 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
|
CA9967311 rs199674062 |
237 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs751737983 CA409718321 |
238 | I>L | No |
ClinGen ExAC gnomAD |
|
|
rs751737983 CA9967312 |
238 | I>V | No |
ClinGen ExAC gnomAD |
|
|
rs1601349031 CA409718335 |
239 | T>A | No |
ClinGen Ensembl |
|
|
CA409718341 rs1365484867 |
239 | T>S | No |
ClinGen gnomAD |
|
|
CA317494291 rs377765852 |
240 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
COSM1029173 CA9967314 rs377765852 |
240 | D>Y | endometrium [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
rs991669063 CA317494468 |
241 | V>A | No |
ClinGen Ensembl |
|
|
rs758120013 CA9967341 |
243 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs569321240 CA317494477 |
244 | G>C | No |
ClinGen 1000Genomes gnomAD |
|
|
rs569321240 CA409718574 |
244 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes NCI-TCGA gnomAD |
|
rs768003610 CA9967344 |
245 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
CA9967343 rs375812373 |
245 | Y>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1601349578 CA409718672 |
246 | Y>H | No |
ClinGen Ensembl |
|
|
rs372783494 CA317494495 |
250 | F>S | No |
ClinGen ESP |
|
|
rs533220710 CA317494498 |
251 | D>E | No |
ClinGen Ensembl |
|
|
CA9967347 rs147215704 |
252 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
|
CA409718953 rs1171522386 |
255 | L>M | No |
ClinGen gnomAD |
|
|
rs1317966438 CA409718993 |
256 | R>G | No |
ClinGen gnomAD |
|
| TCGA novel | 257 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1350514802 CA409719134 |
259 | V>A | No |
ClinGen gnomAD |
|
|
CA9967350 rs772256599 |
259 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967351 rs775523781 |
260 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs1474715853 CA409719189 |
262 | G>V | No |
ClinGen TOPMed |
|
|
rs369654019 COSM1240707 CA9967353 |
264 | G>S | Variant assessed as Somatic; 0.0 impact. oesophagus large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA gnomAD |
| TCGA novel | 266 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1601349702 CA409719354 |
266 | L>R | No |
ClinGen Ensembl |
|
| TCGA novel | 269 | L>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs200749334 CA9967356 |
270 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
CA9967357 rs376773744 |
270 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs758884199 CA9967358 |
271 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA9967359 rs200268567 |
272 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs932640309 CA317494545 |
273 | A>T | No |
ClinGen gnomAD |
|
|
rs1258527591 CA409719582 |
274 | T>I | No |
ClinGen TOPMed |
|
|
rs754670538 CA9967361 |
275 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA9967363 rs747760596 |
277 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA9967364 rs1555831179 |
278 | S>P | No |
ClinGen Ensembl |
|
|
rs1176240589 CA409719743 |
279 | D>N | No |
ClinGen gnomAD |
|
|
CA9967366 rs138413259 |
280 | S>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA317494570 rs1005018219 |
282 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
CA409719915 rs1431588752 |
283 | T>A | No |
ClinGen gnomAD |
|
|
rs373921217 CA9967370 |
283 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409719953 rs1221454317 |
284 | G>C | No |
ClinGen gnomAD |
|
|
CA409719957 rs1282456514 |
284 | G>D | No |
ClinGen gnomAD |
|
|
rs1281723231 CA409720009 |
286 | S>C | No |
ClinGen gnomAD |
|
|
CA9967375 rs140656554 |
287 | S>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1265968613 CA409720046 |
288 | Y>C | No |
ClinGen gnomAD |
|
|
CA9967376 rs750912629 |
288 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409720100 rs1199121866 |
291 | V>L | No |
ClinGen gnomAD |
|
|
rs769957221 CA9967393 |
292 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA409720455 rs1366321479 |
292 | V>M | No |
ClinGen TOPMed |
|
|
CA9967394 rs773436970 |
293 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs373776605 CA9967396 |
294 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759989979 CA9967398 |
295 | D>V | No |
ClinGen ExAC gnomAD |
|
|
COSM1413183 CA409720584 rs1176701629 |
296 | A>T | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
CA9967400 rs752304230 |
296 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA9967403 rs753406862 |
297 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs142109835 CA9967402 |
297 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9967405 CA409720648 rs778954072 |
298 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA409720627 rs1568802992 |
298 | D>G | No |
ClinGen Ensembl |
|
|
CA409720613 rs1209015640 |
298 | D>N | No |
ClinGen TOPMed |
|
|
CA9967408 rs376980453 |
301 | Q>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA9967409 rs779748126 |
303 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA317495116 rs779748126 |
303 | S>F | No |
ClinGen ExAC gnomAD |
|
|
rs867749644 CA317495130 |
305 | L>F | No |
ClinGen gnomAD |
|
|
rs201732460 CA9967411 |
305 | L>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs201213325 CA9967412 |
307 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA317495148 rs891247784 |
308 | S>C | No |
ClinGen TOPMed |
|
|
rs771316530 CA9967414 |
308 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1378292797 CA409720939 |
309 | L>F | No |
ClinGen TOPMed |
|
|
CA9967415 rs774872681 |
310 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA409720999 rs1312877068 |
311 | V>L | No |
ClinGen gnomAD |
|
|
rs759991028 CA9967416 |
313 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409721096 rs1225828685 |
314 | S>A | No |
ClinGen gnomAD |
|
| TCGA novel | 315 | D>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9967417 rs146368477 |
316 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967419 rs760308422 |
318 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs897333909 CA317495161 |
318 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1461082827 CA409721213 |
319 | S>T | No |
ClinGen gnomAD |
|
|
CA9967420 rs763803634 |
320 | G>E | No |
ClinGen ExAC gnomAD |
|
|
CA409721234 rs1201086086 |
320 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1190866035 CA409721278 |
322 | C>S | No |
ClinGen TOPMed gnomAD |
|
|
rs756844838 CA409721296 |
322 | C>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409721275 rs1190866035 |
322 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA409721303 rs1478023553 |
323 | S>G | No |
ClinGen gnomAD |
|
|
CA317495177 rs1027493872 |
323 | S>N | No |
ClinGen Ensembl |
|
|
CA409721352 rs1200425357 |
324 | S>F | No |
ClinGen gnomAD |
|
|
rs1172629797 CA409721408 |
327 | A>P | No |
ClinGen gnomAD |
|
|
COSM1615880 CA409721419 rs1236357496 |
327 | A>V | liver [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA409721420 rs1426748119 |
328 | G>S | No |
ClinGen gnomAD |
|
|
rs1465273637 CA409721501 |
331 | V>A | No |
ClinGen TOPMed gnomAD |
|
|
rs758275876 CA9967425 |
334 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs1298051577 CA409721566 |
334 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1255942236 CA409721612 |
336 | I>T | No |
ClinGen TOPMed |
|
|
rs1355108635 CA409721603 |
336 | I>V | No |
ClinGen TOPMed |
|
| TCGA novel | 337 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs779980060 CA9967426 |
339 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746865146 CA9967427 |
342 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs969928229 CA317495196 |
346 | Y>F | No |
ClinGen TOPMed |
|
|
CA409721825 rs1295853235 |
347 | E>D | No |
ClinGen TOPMed |
|
| TCGA novel | 347 | E>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs762414829 CA9967459 |
354 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967460 rs774274621 |
354 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774274621 CA9967461 |
354 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317495354 rs759550315 |
355 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317495352 rs910979568 |
355 | H>Y | No |
ClinGen Ensembl |
|
|
CA409722175 rs1379139299 |
356 | A>E | No |
ClinGen gnomAD |
|
|
rs767361941 CA317495357 |
356 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs767361941 CA9967463 |
356 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA409722180 rs1379139299 |
356 | A>V | No |
ClinGen gnomAD |
|
|
rs757499255 CA409722189 |
357 | E>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757499255 CA9967465 |
357 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1321107113 CA409722216 |
358 | G>S | No |
ClinGen gnomAD |
|
|
CA409722233 rs987878223 |
359 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA9967466 rs779045592 |
359 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317495369 rs987878223 |
359 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA9967468 rs758424638 |
364 | H>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1197566277 CA409722379 |
364 | H>Y | No |
ClinGen gnomAD |
|
|
rs780142904 CA9967469 |
365 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs930195131 CA317495386 |
368 | L>V | No |
ClinGen Ensembl |
|
|
CA317495390 rs967667093 |
369 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
rs747453837 CA9967471 |
370 | R>* | No |
ClinGen ExAC gnomAD |
|
|
rs1353073651 CA409722509 |
370 | R>P | No |
ClinGen gnomAD |
|
|
rs755491802 CA9967472 |
371 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1048653003 CA317495396 |
372 | K>R | No |
ClinGen gnomAD |
|
|
CA9967473 COSM1029176 rs781610219 |
373 | S>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
CA9967477 rs772687386 |
377 | C>R | No |
ClinGen ExAC gnomAD |
|
|
CA9967479 rs770498302 |
378 | V>E | No |
ClinGen ExAC gnomAD |
|
|
CA9967478 rs748976618 |
378 | V>M | No |
ClinGen ExAC gnomAD |
|
|
CA9967480 rs774010788 |
379 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs1258289985 CA409722669 |
379 | E>K | No |
ClinGen gnomAD |
|
|
CA409722709 rs1207377435 |
380 | T>I | No |
ClinGen gnomAD |
|
|
CA409722704 rs1207377435 |
380 | T>N | No |
ClinGen gnomAD |
|
|
CA409722721 rs1440537626 |
381 | L>P | No |
ClinGen gnomAD |
|
|
rs1236346601 CA409722740 |
382 | Q>R | No |
ClinGen gnomAD |
|
|
rs1184053164 CA409722825 |
385 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs759532004 CA9967481 |
386 | R>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967482 rs767631768 |
387 | V>A | No |
ClinGen ExAC gnomAD |
|
|
rs775325229 CA9967483 |
388 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409722943 rs1450313389 |
391 | G>S | No |
ClinGen gnomAD |
|
|
CA317495410 rs760436621 |
392 | T>I | No |
ClinGen ExAC |
|
|
rs760436621 CA9967485 |
392 | T>N | No |
ClinGen ExAC |
|
|
CA9967486 rs763971729 |
394 | K>T | No |
ClinGen ExAC gnomAD |
|
|
rs370604942 CA9967487 |
395 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409723041 rs1399141944 |
395 | P>T | No |
ClinGen gnomAD |
|
| TCGA novel | 397 | R>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9967489 rs766390404 |
397 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967488 rs758627917 |
397 | R>T | No |
ClinGen ExAC gnomAD |
|
|
CA9967490 rs751698813 |
398 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 398 | C>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9967492 rs781595143 |
399 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967491 rs755444519 |
399 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1601354305 CA409723119 |
400 | G>R | No |
ClinGen Ensembl |
|
|
rs1488275929 CA409723129 |
400 | G>V | No |
ClinGen gnomAD |
|
|
rs866448387 CA317495432 |
401 | R>G | No |
ClinGen Ensembl |
|
|
CA409723140 rs1194799280 |
401 | R>K | No |
ClinGen gnomAD |
|
| TCGA novel | 401 | R>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs748707620 CA9967493 CA409723159 |
402 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756390245 CA9967494 |
403 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967495 rs778203961 |
403 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs892486388 CA317495443 |
404 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1416236797 CA409723231 |
405 | P>L | No |
ClinGen gnomAD |
|
|
rs1358514112 CA409723257 |
407 | G>D | No |
ClinGen gnomAD |
|
|
rs200343535 CA9967496 |
408 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9967497 rs138272828 |
408 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409724529 rs138272828 |
408 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1342084279 CA409724538 |
409 | P>L | No |
ClinGen gnomAD |
|
|
rs1273882187 CA409724548 |
410 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs773992704 CA409724585 |
412 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967499 rs529179812 |
412 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773992704 CA9967498 |
412 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs576313585 CA9967500 |
413 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs775243188 CA9967501 CA9967502 |
414 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs373955065 CA9967503 |
415 | F>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1393524264 CA409724664 |
416 | D>Y | No |
ClinGen TOPMed |
|
|
rs763151729 CA9967505 |
418 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967506 rs766658226 |
419 | N>D | No |
ClinGen ExAC gnomAD |
|
|
CA409724851 rs1420399960 CA409724847 |
419 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
rs1379720413 CA409724826 |
419 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1159112386 CA409724856 |
420 | E>K | No |
ClinGen gnomAD |
|
|
rs1387138224 CA409724935 |
421 | K>N | No |
ClinGen gnomAD |
|
|
rs976544817 CA409725074 |
424 | G>A | No |
ClinGen TOPMed |
|
|
rs976544817 CA317496565 |
424 | G>D | No |
ClinGen TOPMed |
|
|
rs1601354635 CA409725082 |
425 | Q>* | No |
ClinGen Ensembl |
|
|
rs767662975 CA9967509 |
425 | Q>P | No |
ClinGen ExAC gnomAD |
|
|
rs1601354661 CA409725122 |
426 | A>P | No |
ClinGen Ensembl |
|
|
rs1375440517 CA409725178 |
427 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
rs756656348 CA9967511 |
428 | G>R | No |
ClinGen ExAC gnomAD |
|
|
rs1420686179 CA409725219 |
429 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1354933283 CA409725255 |
430 | L>P | No |
ClinGen gnomAD |
|
|
CA409725294 rs1290988363 |
432 | A>P | No |
ClinGen TOPMed gnomAD |
|
|
CA409725290 rs1290988363 |
432 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA409725348 rs1237809773 |
433 | G>A | No |
ClinGen gnomAD |
|
|
CA9967514 rs17855481 COSM478399 CA9967515 |
433 | G>R | kidney Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD NCI-TCGA |
|
CA9967516 rs572280894 |
434 | A>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1601354792 CA409725397 |
435 | A>T | No |
ClinGen Ensembl |
|
|
rs779624579 CA9967518 |
436 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs201928593 CA9967517 |
436 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA409725469 rs1162618539 |
437 | A>S | No |
ClinGen gnomAD |
|
|
CA9967519 rs746868722 COSM3841547 |
437 | A>V | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
|
rs761642869 CA9967522 |
438 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs761642869 CA409725524 |
438 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967523 rs769597520 |
439 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409725597 rs1306929592 |
440 | R>M | No |
ClinGen Ensembl |
|
|
rs370133689 CA9967524 |
440 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA409725618 rs1332839463 |
441 | S>N | No |
ClinGen gnomAD |
|
|
rs759805838 CA9967525 |
443 | D>G | No |
ClinGen ExAC gnomAD |
|
|
rs752880223 CA9967527 |
444 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA409725767 rs1358832916 |
445 | Y>* | No |
ClinGen gnomAD |
|
| TCGA novel | 445 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA409725777 rs1217261720 |
446 | H>Y | No |
ClinGen gnomAD |
|
|
rs761080042 CA9967528 |
449 | K>R | No |
ClinGen ExAC gnomAD |
|
|
rs891948379 CA317496595 |
450 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1455230910 CA409725901 |
451 | A>S | No |
ClinGen TOPMed |
|
|
CA9967530 rs754234486 |
453 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA317496598 rs561163473 |
453 | R>W | No |
ClinGen 1000Genomes gnomAD |
|
|
CA9967531 rs757648210 |
454 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs779452220 CA9967532 |
455 | L>P | Variant assessed as Somatic; 5.451e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA9967533 rs750029707 |
456 | S>G | No |
ClinGen ExAC gnomAD |
|
|
rs758086425 CA9967534 |
456 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200601981 CA9967536 |
458 | R>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
COSM1413186 CA9967535 rs200685533 |
458 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs368559585 CA9967537 |
460 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1399367137 CA409726094 |
461 | Q>K | No |
ClinGen gnomAD |
|
|
CA317496607 rs986789451 |
464 | E>K | No |
ClinGen Ensembl |
|
|
rs1335449403 CA409726243 |
465 | K>N | No |
ClinGen gnomAD |
|
|
CA317496611 rs967802990 |
467 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs769506983 CA9967540 |
468 | R>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967541 rs773000592 |
468 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs532583468 CA9967544 |
471 | R>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA9967543 rs772404661 |
471 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409726572 rs1191456735 |
473 | I>S | No |
ClinGen gnomAD |
|
|
rs1486639481 CA409726552 |
473 | I>V | No |
ClinGen gnomAD |
|
|
CA9967546 rs764293064 |
474 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs760857342 CA9967545 |
474 | R>W | No |
ClinGen ExAC gnomAD |
|
|
rs754357232 CA9967547 |
475 | S>T | No |
ClinGen ExAC gnomAD |
|
|
rs1375648178 CA409726680 |
476 | I>N | No |
ClinGen TOPMed gnomAD |
|
|
rs146057569 CA9967548 |
478 | E>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9967550 rs375085287 |
481 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs760288064 CA317496636 |
482 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA9967551 rs765638920 |
482 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs765638920 CA317496639 |
482 | R>P | No |
ClinGen ExAC gnomAD |
|
|
rs760288064 CA409726901 |
482 | R>S | No |
ClinGen TOPMed gnomAD |
|
|
CA317496645 rs1043789056 |
483 | N>D | No |
ClinGen Ensembl |
|
|
CA409726926 rs1043789056 |
483 | N>H | No |
ClinGen Ensembl |
|
|
CA409727008 rs368346804 |
484 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967553 rs368346804 |
484 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs754468543 CA9967554 |
485 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1195382100 CA409727036 |
485 | G>S | No |
ClinGen TOPMed |
|
|
CA409727118 rs200051356 |
486 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA9967556 rs200051356 |
486 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780681193 CA9967555 |
486 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA9967578 rs139711299 |
487 | H>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA409727394 rs1410706176 |
487 | H>R | No |
ClinGen TOPMed |
|
|
rs139711299 CA9967579 |
487 | H>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA9967580 rs767605942 |
488 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409727412 rs767605942 |
488 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747197367 CA409727423 |
488 | S>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747197367 CA9967581 |
488 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs776850416 CA9967583 |
489 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA409727457 rs1456208482 |
490 | A>V | No |
ClinGen gnomAD |
|
|
CA409727486 rs1232914278 |
491 | S>L | No |
ClinGen gnomAD |
|
|
CA409727487 rs1481336212 |
492 | A>T | No |
ClinGen gnomAD |
|
|
CA9967587 rs773725976 |
493 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
rs773725976 CA9967586 |
493 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs766704368 CA9967588 |
495 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA9967589 rs774632294 |
496 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs774632294 CA409727615 |
496 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs759183936 CA9967590 |
496 | E>V | No |
ClinGen ExAC gnomAD |
|
|
rs767197865 CA9967591 |
498 | L>V | No |
ClinGen ExAC gnomAD |
|
|
rs1016531515 CA317496772 |
500 | G>E | No |
ClinGen TOPMed |
|
|
CA409727747 rs1224107764 |
500 | G>R | No |
ClinGen TOPMed |
|
|
rs1356299990 CA409727772 |
501 | A>V | No |
ClinGen gnomAD |
|
|
rs1281619123 CA409727804 |
502 | Q>H | No |
ClinGen TOPMed |
|
|
CA317496775 rs376634879 |
503 | R>C | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA9967592 rs144585689 |
503 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA9967593 rs760128318 |
504 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs1297656832 CA409727906 |
506 | G>V | No |
ClinGen TOPMed |
|
|
rs369758532 CA9967598 |
509 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967597 rs750664509 |
509 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs755222790 CA9967599 |
510 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs946269173 CA317496786 |
513 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
CA9967601 rs145269474 |
514 | G>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 516 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs749787061 CA9967604 |
518 | E>D | No |
ClinGen ExAC gnomAD |
|
|
rs780057742 CA9967603 |
518 | E>V | No |
ClinGen ExAC gnomAD |
|
|
CA409728108 rs1422006131 |
519 | Q>* | No |
ClinGen gnomAD |
|
|
CA317496794 rs988322761 |
521 | K>T | No |
ClinGen Ensembl |
|
| TCGA novel | 523 | D>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs914077561 CA317496796 |
523 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs968109304 COSM1270921 CA317496801 |
524 | T>I | oesophagus [Cosmic] | No |
ClinGen cosmic curated TOPMed |
|
CA409728235 rs1378793977 |
526 | K>R | No |
ClinGen gnomAD |
|
|
rs144346262 CA9967607 |
527 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA9967608 rs759940469 |
528 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1435216834 CA409728263 |
528 | M>L | No |
ClinGen gnomAD |
|
| TCGA novel | 531 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA9967610 rs775082825 |
532 | F>Q | No |
ClinGen ExAC gnomAD |
No associated diseases with Q8N5A5
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| chromatin | The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome. |
| nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
6 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA-binding transcription factor activity | A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| DNA-binding transcription factor activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II. |
| DNA-binding transcription repressor activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II. |
| metal ion binding | Binding to a metal ion. |
| RNA polymerase II cis-regulatory region sequence-specific DNA binding | Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II. |
| sequence-specific DNA binding | Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| negative regulation of DNA-templated transcription | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
| negative regulation of epidermal growth factor-activated receptor activity | Any process that stops, prevents, or reduces the frequency, rate or extent of EGF-activated receptor activity. |
| negative regulation of transcription by RNA polymerase II | Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDEESLESAL | QTYRAQLQQV | ELALGAGLDS | SEQADLRQLQ | GDLKELIELT | EASLVSVRKS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| SLLAALDEER | PGRQEDAEYQ | AFREAITEAV | EAPAAARGSG | SETVPKAEAG | PESAAGGQEE |
| 130 | 140 | 150 | 160 | 170 | 180 |
| EEGEDEEELS | GTKVSAPYYS | SWGTLEYHNA | MVVGTEEAED | GSAGVRVLYL | YPTHKSLKPC |
| 190 | 200 | 210 | 220 | 230 | 240 |
| PFFLEGKCRF | KENCRFSHGQ | VVSLDELRPF | QDPDLSSLQA | GSACLAKHQD | GLWHAARITD |
| 250 | 260 | 270 | 280 | 290 | 300 |
| VDNGYYTVKF | DSLLLREAVV | EGDGILPPLR | TEATESDSDS | DGTGDSSYAR | VVGSDAVDSA |
| 310 | 320 | 330 | 340 | 350 | 360 |
| QSSALCPSLA | VVGSDAVDSG | TCSSAFAGWE | VHTRGIGSRL | LTKMGYEFGK | GLGRHAEGRV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EPIHAVVLPR | GKSLDQCVET | LQKQTRVGKA | GTNKPPRCRG | RGARPGGRPA | PRNVFDFLNE |
| 430 | 440 | 450 | 460 | 470 | 480 |
| KLQGQAPGAL | EAGAAPAGRR | SKDMYHASKS | AKRALSLRLF | QTEEKIERTQ | RDIRSIQEAL |
| 490 | 500 | 510 | 520 | 530 | |
| ARNAGRHSVA | SAQLQEKLAG | AQRQLGQLRA | QEAGLQQEQR | KADTHKKMTE | F |