Q8L4B2
Gene name |
NFYC9 (HAP5C, At1g08970, F7G19.16) |
Protein name |
Nuclear transcription factor Y subunit C-9 |
Names |
AtNF-YC-9, Transcriptional activator HAP5C |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G08970 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q8L4B2
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q8L4B2-F1 | Predicted | AlphaFoldDB |
5 variants for Q8L4B2
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_2883287_G_T | 48 | Q>H | No | 1000Genomes | |
| ENSVATH04542227 | 67 | F>I | No | 1000Genomes | |
| tmp_1_2883667_C_A | 175 | P>Q | No | 1000Genomes | |
| ENSVATH04542229 | 175 | P>S | No | 1000Genomes | |
| ENSVATH04542230 | 218 | M>V | No | 1000Genomes |
No associated diseases with Q8L4B2
1 regional properties for Q8L4B2
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Histone H2A/H2B/H3 | 46 - 143 | IPR007125 |
3 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
5 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA-binding transcription activator activity, RNA polymerase II-specific | A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II. |
| DNA-binding transcription factor activity | A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
| protein heterodimerization activity | Binding to a nonidentical protein to form a heterodimer. |
| sequence-specific DNA binding | Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
| transcription cis-regulatory region binding | Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon. |
5 GO annotations of biological process
| Name | Definition |
|---|---|
| abscisic acid-activated signaling pathway | The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription. |
| gibberellic acid mediated signaling pathway | The series of molecular signals mediated by the detection of gibberellic acid. |
| positive regulation of photomorphogenesis | Any process that activates or increases the frequency, rate or extent of photomorphogenesis. |
| regulation of DNA-templated transcription | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| regulation of seed germination | Any process that modulates the frequency, rate or extent of seed germination. |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MDQQDHGQSG | AMNYGTNPYQ | TNPMSTTAAT | VAGGAAQPGQ | LAFHQIHQQQ | QQQQLAQQLQ |
| 70 | 80 | 90 | 100 | 110 | 120 |
| AFWENQFKEI | EKTTDFKNHS | LPLARIKKIM | KADEDVRMIS | AEAPVVFARA | CEMFILELTL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| RSWNHTEENK | RRTLQKNDIA | AAVTRTDIFD | FLVDIVPRED | LRDEVLGSIP | RGTVPEAAAA |
| 190 | 200 | 210 | 220 | 230 | |
| GYPYGYLPAG | TAPIGNPGMV | MGNPGGAYPP | NPYMGQPMWQ | QQAPDQPDQE | N |