Q80UW8

PR
Gene name
Polr2e
Protein name
DNA-directed RNA polymerases I, II, and III subunit RPABC1
Names
RNA polymerases I, II, and III subunit ABC1, DNA-directed RNA polymerase II subunit E, RPB5 homolog
Species
Mus musculus (Mouse)
KEGG Pathway
mmu:66420
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

1-150 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for Q80UW8

Entry ID Method Resolution Chain Position Source
AF-Q80UW8-F1 Predicted AlphaFoldDB

11 variants for Q80UW8

Variant ID(s) Position Change Description Diseaes Association Provenance
rs3389055454 18 M>I No EVA
rs3389112918 21 C>R No EVA
rs3389123913 64 H>L No EVA
rs3401131517 74 V>G No EVA
rs3401514711 75 F>I No EVA
rs3389086234 91 C>Y No EVA
rs13469136 130 F>S No EVA
rs3389111783 133 Q>L No EVA
rs3389115852 145 V>F No EVA
rs3389112563 166 R>H No EVA
rs3389109431 204 I>L No EVA

No associated diseases with Q80UW8

3 regional properties for Q80UW8

Type Name Position InterPro Accession
domain RNA polymerase, subunit H/Rpb5 C-terminal 137 - 209 IPR000783
domain RNA polymerase, Rpb5, N-terminal 4 - 94 IPR005571
conserved_site RNA polymerase, subunit H/Rpb5, conserved site 142 - 155 IPR020608

Functions

Description
EC Number
Subcellular Localization
  • Nucleus
  • Nucleus, nucleolus
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

6 GO annotations of cellular component

Name Definition
nucleoplasm That part of the nuclear content other than the chromosomes or the nucleolus.
nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
RNA polymerase I complex RNA polymerase I, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces rRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase III and others of which are also found in RNA polymerases II and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
RNA polymerase II, core complex RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
RNA polymerase III complex RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.
RPAP3/R2TP/prefoldin-like complex A protein complex first characterized in human and comprised of a R2TP module (R2TP complex), a prefoldin-like module (containing both prefoldin-like proteins and canonical prefoldins), WD40 repeat protein Monad/WDR92 and DNA-dependent RNA polymerase subunit RPB5. This complex might have chaperone activity.

2 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

1 GO annotations of biological process

Name Definition
transcription by RNA polymerase II The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

4 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
Q2T9T3 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 Bos taurus (Bovine) PR
P19388 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 Homo sapiens (Human) PR
B0BNE2 Polr2e DNA-directed RNA polymerases I, II, and III subunit RPABC1 Rattus norvegicus (Rat) PR
Q9N5K2 rpb-5 DNA-directed RNA polymerases I, II, and III subunit RPABC1 Caenorhabditis elegans PR
10 20 30 40 50 60
MDDEEETYRL WKIRKTIMQL CHDRGYLVTQ DELDQTLEEF KAQFGDKPSE GRPRRTDLTV
70 80 90 100 110 120
LVAHNDDPTD QMFVFFPEEP KVGIKTIKVY CQRMQEENIT RALIVVQQGM TPSAKQSLVD
130 140 150 160 170 180
MAPKYVLEQF LQQELLINIT EHELVPEHVV MTKEEVTELL ARYKLRESQL PRIQAGDPVA
190 200
RYFGIKRGQV VKIIRPSETA GRYITYRLVQ