Q16625
Gene name |
OCLN |
Protein name |
Occludin |
Names |
|
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:100506658 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
4 structures for Q16625
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 1WPA | X-ray | 150 A | A | 413-522 | PDB |
| 1XAW | X-ray | 145 A | A | 383-522 | PDB |
| 3G7C | X-ray | 200 A | A | 416-522 | PDB |
| AF-Q16625-F1 | Predicted | AlphaFoldDB |
414 variants for Q16625
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000146972 CA213250 rs113706384 |
2 | S>P | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
rs147125035 RCV000146974 RCV002478408 CA172888 RCV002055910 |
24 | P>A | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA3294374 RCV001330739 rs373915080 |
36 | R>* | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1561334604 RCV000007142 |
57 | K>missing | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001268371 rs797045841 RCV000192882 |
58 | W>missing | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000201608 rs863225128 |
85 | S>missing | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000146971 CA213248 RCV000425727 rs28562785 RCV002055909 |
151 | A>V | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs749237456 CA120712493 RCV000007143 |
171 | Y>* | Pseudo-TORCH syndrome 1 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000162145 rs730882227 |
172 | Y>missing | Global developmental delay [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000007144 CA213150 rs267606926 VAR_064910 |
219 | F>S | Pseudo-TORCH syndrome 1 PTORCH1 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
rs1032322032 CA120711970 |
4 | R>S | No |
ClinGen Ensembl |
|
|
rs576636804 CA3294349 |
7 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs1580547770 RCV001008859 |
8 | S>missing | No |
ClinVar dbSNP |
|
|
rs139272416 CA3294350 |
8 | S>N | No |
ClinGen ESP ExAC gnomAD |
|
|
CA3294351 rs757558128 |
9 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs761271718 CA3294352 |
10 | P>S | No |
ClinGen ExAC gnomAD |
|
|
CA360072724 rs1159846573 |
12 | Y>C | No |
ClinGen TOPMed |
|
|
rs1173899448 CA360072790 |
14 | P>L | No |
ClinGen gnomAD |
|
|
rs1454090118 CA360072771 |
14 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs1289762967 CA360072794 |
15 | D>N | No |
ClinGen gnomAD |
|
|
CA360075240 rs1397330127 |
19 | P>A | No |
ClinGen TOPMed |
|
|
CA3294368 rs368281009 |
19 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368281009 CA3294367 |
19 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA360075277 rs1372191602 |
20 | N>K | No |
ClinGen TOPMed |
|
|
CA360075336 rs1424253323 |
22 | Y>* | No |
ClinGen TOPMed |
|
|
CA360075327 rs1295888643 |
22 | Y>C | No |
ClinGen gnomAD |
|
|
rs761061240 CA3294370 |
23 | A>E | No |
ClinGen ExAC gnomAD |
|
|
rs1372195617 CA360075341 |
23 | A>P | No |
ClinGen gnomAD |
|
|
CA360075386 rs1321131368 |
25 | S>N | No |
ClinGen gnomAD |
|
|
rs776567486 CA3294371 |
26 | N>K | No |
ClinGen ExAC gnomAD |
|
|
rs759591993 CA3294372 |
29 | Y>H | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 29 | Y>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1325520008 CA360075506 |
30 | G>D | No |
ClinGen gnomAD |
|
|
CA360075515 rs890382090 |
31 | G>* | No |
ClinGen TOPMed |
|
|
CA120712470 rs890382090 |
31 | G>R | No |
ClinGen TOPMed |
|
|
CA360075553 rs1212368787 |
32 | E>D | No |
ClinGen gnomAD |
|
|
rs765418762 CA3294373 |
34 | H>D | No |
ClinGen ExAC gnomAD |
|
|
CA360075612 rs1177978281 |
36 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA360075623 rs1479659926 |
37 | P>A | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 37 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs201821077 CA3294376 |
38 | M>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1430628172 CA360075650 |
39 | L>F | No |
ClinGen gnomAD |
|
|
CA3294377 rs750291439 |
39 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA3294380 rs753732841 |
41 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778423540 CA3294382 |
45 | S>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360075741 rs1343177731 |
46 | F>S | No |
ClinGen gnomAD |
|
|
CA3294383 rs747765035 |
48 | P>S | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 48 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA360075807 rs1212710060 |
51 | E>Q | No |
ClinGen gnomAD |
|
|
rs773552792 CA3294385 |
54 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360075847 rs1321815492 |
54 | H>Y | No |
ClinGen TOPMed |
|
|
rs1306982956 CA360075867 |
55 | F>L | No |
ClinGen gnomAD |
|
|
rs977828597 CA120712471 |
56 | Y>* | No |
ClinGen Ensembl |
|
|
CA3294386 rs756837651 |
58 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs756837651 CA360075915 |
58 | W>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1205575149 CA360075905 |
58 | W>R | No |
ClinGen TOPMed gnomAD |
|
|
rs765022975 CA120712473 |
59 | T>I | No |
ClinGen gnomAD |
|
|
rs765022975 CA360075929 |
59 | T>N | No |
ClinGen gnomAD |
|
|
rs552617487 CA3294387 |
59 | T>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs765022975 CA120712472 |
59 | T>S | No |
ClinGen gnomAD |
|
|
rs200344104 CA3294390 |
60 | S>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA360075964 rs1418251604 |
61 | P>S | No |
ClinGen gnomAD |
|
|
rs769965483 CA3294391 |
62 | P>A | No |
ClinGen ExAC gnomAD |
|
|
rs763255573 CA3294394 |
65 | I>M | No |
ClinGen ExAC gnomAD |
|
|
rs764482939 CA3294395 |
66 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV000194097 CA208038 RCV001563429 rs116363086 |
66 | R>L | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA120712474 rs764482939 |
66 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766112658 CA3294397 |
67 | I>F | No |
ClinGen ExAC gnomAD |
|
|
rs754945778 CA3294399 |
69 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA3294402 rs752257694 |
70 | M>T | No |
ClinGen ExAC gnomAD |
|
|
CA3294401 COSM1620495 rs778368708 |
70 | M>V | Variant assessed as Somatic; 0.0 impact. liver [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA360076121 rs758041884 COSM1728141 |
71 | L>F | liver [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed |
|
rs758041884 CA3294403 |
71 | L>I | No |
ClinGen ExAC TOPMed |
|
|
CA3294404 rs777417364 |
71 | L>P | No |
ClinGen ExAC gnomAD |
|
|
rs771276299 CA360076139 |
72 | I>S | No |
ClinGen ExAC gnomAD |
|
|
CA3294406 rs771276299 |
72 | I>T | No |
ClinGen ExAC gnomAD |
|
|
CA360076163 rs1189971928 |
74 | V>E | No |
ClinGen TOPMed gnomAD |
|
|
CA120712475 rs1032399798 |
76 | C>G | No |
ClinGen TOPMed |
|
|
rs781452019 CA3294407 |
76 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
CA3294408 rs201378122 |
78 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs770481920 CA3294409 |
79 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360076255 rs1206341836 |
81 | A>G | No |
ClinGen TOPMed |
|
|
rs980087742 CA120712476 |
82 | C>R | No |
ClinGen gnomAD |
|
|
CA3294412 rs768874429 |
85 | S>C | No |
ClinGen ExAC gnomAD |
|
|
CA3294413 rs757935966 |
86 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294414 rs757935966 COSM2156582 |
86 | T>M | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs1580553858 CA360076323 |
87 | L>F | No |
ClinGen Ensembl |
|
| TCGA novel | 90 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 91 | R>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1380656789 CA360076391 |
92 | G>R | No |
ClinGen gnomAD |
|
|
CA3294416 rs753622102 |
94 | G>E | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 98 | L>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA120712478 rs867300539 |
99 | G>E | No |
ClinGen Ensembl |
|
|
CA360076476 rs1358662300 |
101 | S>N | No |
ClinGen gnomAD |
|
|
COSM1069753 CA360076486 rs1222442697 |
102 | V>I | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
|
rs759451903 CA3294417 |
105 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765225540 CA3294418 |
106 | Y>D | No |
ClinGen ExAC gnomAD |
|
|
CA3294420 rs757843945 |
107 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs796086905 CA120712479 |
111 | F>Y | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 113 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3294423 rs751194309 |
114 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs941398345 CA120712480 |
115 | G>R | No |
ClinGen gnomAD |
|
|
rs973110252 CA120712481 |
118 | Y>C | No |
ClinGen TOPMed gnomAD |
|
|
CA3294430 rs569095249 |
120 | Y>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs138515133 CA3294429 |
120 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs896975040 COSM1620496 CA120712483 |
122 | Y>C | liver [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
| TCGA novel | 123 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs370941532 CA120712484 |
125 | G>S | No |
ClinGen gnomAD |
|
|
CA3294432 rs749839176 |
127 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360076846 rs150730577 |
128 | Y>* | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1440248479 CA360076844 |
128 | Y>S | No |
ClinGen gnomAD |
|
|
rs1330227470 CA360076872 |
130 | G>D | No |
ClinGen gnomAD |
|
|
rs889674388 CA120712485 |
131 | Y>H | No |
ClinGen Ensembl |
|
|
rs774332591 CA3294433 |
132 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360076902 rs1261824320 |
133 | D>Y | No |
ClinGen gnomAD |
|
|
rs554315084 CA3294435 |
134 | P>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3294434 rs554315084 |
134 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA360076941 rs1225699293 |
136 | A>T | No |
ClinGen gnomAD |
|
|
rs899798595 CA120712487 |
138 | K>* | No |
ClinGen TOPMed |
|
|
CA3294437 rs776401814 |
139 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA360077002 rs759259792 |
141 | M>L | No |
ClinGen ExAC gnomAD |
|
|
CA360077009 rs1252351968 |
141 | M>T | No |
ClinGen gnomAD |
|
|
CA3294438 rs759259792 |
141 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1580554283 CA360077028 |
142 | L>F | No |
ClinGen Ensembl |
|
|
rs1473453088 CA360077048 |
144 | M>T | No |
ClinGen gnomAD |
|
|
CA120712488 rs1021937324 |
144 | M>V | No |
ClinGen gnomAD |
|
|
rs563903726 CA120712489 |
145 | A>S | No |
ClinGen Ensembl |
|
|
CA360077060 rs1196944821 |
145 | A>V | No |
ClinGen gnomAD |
|
|
rs765029327 CA3294439 |
146 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs762908076 CA3294441 |
148 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762908076 CA360077090 |
148 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360077104 rs1248113778 |
149 | F>Y | No |
ClinGen TOPMed |
|
|
rs779726887 CA3294443 |
152 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3294444 RCV000998392 rs142569075 |
152 | A>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA3294447 rs576758998 |
153 | L>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA360077166 rs1345472786 |
155 | I>S | No |
ClinGen gnomAD |
|
|
RCV000657871 rs139928771 CA3294448 |
157 | V>F | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA3294449 rs139928771 |
157 | V>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs779033708 CA3294450 |
158 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294451 rs756715369 |
158 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360077198 rs1274925175 |
159 | S>G | No |
ClinGen gnomAD |
|
|
CA360077201 rs1483801855 |
159 | S>N | No |
ClinGen gnomAD |
|
|
CA3294452 rs772196351 |
160 | V>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs980777387 CA120712490 |
161 | I>V | No |
ClinGen Ensembl |
|
|
CA360077248 rs1267876764 |
163 | S>C | No |
ClinGen gnomAD |
|
|
rs1379515078 CA360077270 |
165 | M>I | No |
ClinGen gnomAD |
|
|
rs773364912 CA360077261 |
165 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773364912 CA3294453 |
165 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294454 rs762501463 |
166 | S>* | No |
ClinGen ExAC |
|
| TCGA novel | 170 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA120712492 rs909873163 |
170 | R>S | No |
ClinGen TOPMed |
|
|
rs1305728099 CA360077335 |
171 | Y>C | No |
ClinGen TOPMed |
|
|
rs1305728099 CA360077334 |
171 | Y>S | No |
ClinGen TOPMed |
|
|
CA360077370 rs1474472582 |
174 | S>N | No |
ClinGen gnomAD |
|
|
rs747252348 CA3294455 |
177 | I>V | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 178 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA360077403 rs1431820745 |
179 | S>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1431820745 CA360077404 |
179 | S>T | No |
ClinGen TOPMed gnomAD |
|
|
CA360077429 rs1561335382 |
183 | G>D | No |
ClinGen Ensembl |
|
|
rs1304054150 CA360077446 |
185 | M>I | No |
ClinGen gnomAD |
|
|
CA3294458 rs372258308 |
185 | M>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs200330025 CA120712495 |
189 | A>V | No |
ClinGen Ensembl |
|
|
rs1370079587 CA360077476 |
190 | T>A | No |
ClinGen TOPMed |
|
|
CA3294459 rs764005265 |
191 | I>V | No |
ClinGen ExAC gnomAD |
|
|
CA3294460 rs774350266 |
192 | V>F | No |
ClinGen ExAC gnomAD |
|
|
CA3294461 rs201347125 |
193 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA360077503 rs1243291111 |
194 | I>M | No |
ClinGen gnomAD |
|
|
rs143065857 CA3294462 |
194 | I>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA360077511 rs750058362 CA3294463 |
195 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360077508 rs1290832304 |
195 | M>T | No |
ClinGen gnomAD |
|
|
CA360077537 rs1444811507 |
199 | P>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1211347886 CA360077539 |
200 | T>A | No |
ClinGen gnomAD |
|
|
rs1259595100 CA360077552 |
202 | Q>* | No |
ClinGen gnomAD |
|
|
CA360077568 rs1188040773 |
204 | S>F | No |
ClinGen gnomAD |
|
|
rs755873538 CA3294464 |
205 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA360077597 rs1561335476 |
209 | G>D | No |
ClinGen Ensembl |
|
|
rs753234332 CA3294468 |
212 | I>S | No |
ClinGen ExAC |
|
|
rs755500864 CA3294469 |
212 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360077625 rs1295603624 |
213 | Y>* | No |
ClinGen gnomAD |
|
|
rs779217784 CA3294470 |
213 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1368044140 CA360077622 |
213 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs753260504 CA3294471 |
214 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
rs1382120974 CA360077660 |
218 | Q>H | No |
ClinGen TOPMed gnomAD |
|
|
rs1383472142 CA360077657 |
218 | Q>P | No |
ClinGen gnomAD |
|
|
rs758359992 CA3294472 |
219 | F>L | No |
ClinGen ExAC gnomAD |
|
|
CA3294473 rs777860360 |
220 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs747199223 CA3294474 |
221 | T>I | Variant assessed as Somatic; 4.62e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs779822279 CA3294476 |
222 | P>L | No |
ClinGen ExAC gnomAD |
|
|
rs377288243 CA3294475 |
222 | P>T | No |
ClinGen ESP ExAC gnomAD |
|
|
CA3294477 rs748970015 |
223 | A>V | No |
ClinGen ExAC gnomAD |
|
|
CA360077694 rs1349258104 |
224 | A>V | No |
ClinGen TOPMed |
|
|
CA360077695 rs1349922288 |
225 | T>A | No |
ClinGen TOPMed gnomAD |
|
|
rs768509969 CA3294478 |
225 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA3294480 rs761845807 |
226 | G>R | No |
ClinGen ExAC gnomAD |
|
|
CA3294481 rs771679621 |
227 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA3294482 rs369493872 |
228 | Y>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA3294484 rs141127898 |
229 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs753530209 CA3294485 |
232 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs17852716 CA120712498 |
233 | L>S | No |
ClinGen Ensembl |
|
|
rs867606882 CA120712499 |
235 | H>R | No |
ClinGen Ensembl |
|
|
rs200609277 CA3294486 |
236 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
CA3294488 rs758982408 |
240 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA3294489 rs756542322 |
240 | D>V | No |
ClinGen ExAC |
|
|
rs777819487 CA3294490 |
241 | P>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA360077807 rs1472215562 RCV000522136 |
242 | Q>* | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
rs1335438322 CA360077810 |
242 | Q>R | No |
ClinGen gnomAD |
|
| TCGA novel | 243 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1397387125 CA360077818 |
243 | E>G | No |
ClinGen gnomAD |
|
|
CA360077813 rs1379483551 |
243 | E>K | No |
ClinGen TOPMed gnomAD |
|
|
rs148494605 CA3294502 |
244 | A>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs371270934 CA3294503 |
245 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 246 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs199655841 CA3294504 |
246 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA120712935 rs562097556 |
250 | G>E | No |
ClinGen Ensembl |
|
|
CA120712936 rs562097556 |
250 | G>V | No |
ClinGen Ensembl |
|
| TCGA novel | 251 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs763448206 CA3294507 |
252 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294506 rs142683205 RCV001703826 COSM1069755 |
252 | M>V | endometrium [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs934771329 CA120712937 |
253 | I>N | No |
ClinGen TOPMed |
|
|
CA120712938 rs28418826 |
255 | V>E | No |
ClinGen Ensembl |
|
|
CA360078250 rs1412047937 |
255 | V>L | No |
ClinGen gnomAD |
|
|
rs752075319 CA3294509 |
257 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764521208 CA3294508 |
257 | F>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294510 rs757279548 |
258 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs79095497 CA120712939 |
258 | A>V | No |
ClinGen Ensembl |
|
|
rs151045915 CA3294511 |
262 | F>C | No |
ClinGen ESP ExAC gnomAD |
|
|
CA120712940 rs896013112 |
265 | V>M | No |
ClinGen TOPMed |
|
|
rs1482825526 CA360078414 |
266 | K>E | No |
ClinGen gnomAD |
|
|
CA3294512 COSM3617666 rs750583958 |
268 | R>* | upper_aerodigestive_tract Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA |
|
rs762992411 CA120712942 COSM1218271 |
268 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA360078443 rs1561338303 |
269 | R>T | No |
ClinGen Ensembl |
|
| TCGA novel | 270 | K>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs559132071 CA120712943 |
271 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs559132071 CA3294513 |
271 | M>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs778563065 CA120712945 |
273 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs778563065 CA3294514 |
273 | R>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA120712946 rs748039308 |
273 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA120712944 rs1005239923 |
273 | R>W | No |
ClinGen TOPMed |
|
|
CA120712947 rs994355755 |
274 | Y>H | No |
ClinGen TOPMed |
|
|
CA3294516 rs758269124 |
275 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA3294517 rs777792383 |
276 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs746963747 CA3294518 |
277 | S>A | No |
ClinGen ExAC gnomAD |
|
|
rs776242848 CA3294520 |
278 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1419174832 CA360078554 |
279 | I>N | No |
ClinGen TOPMed |
|
|
rs1309670545 CA360078575 |
281 | W>* | No |
ClinGen gnomAD |
|
|
rs1309670545 CA360078579 |
281 | W>L | No |
ClinGen gnomAD |
|
|
CA360078638 rs1338874490 |
286 | I>V | No |
ClinGen gnomAD |
|
|
CA3294522 rs200654651 |
287 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA360078687 rs1380679015 |
290 | Q>K | No |
ClinGen gnomAD |
|
|
rs373344533 CA3294523 |
291 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs373344533 CA3294524 |
291 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 293 | N>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3294526 rs764466097 |
293 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360078734 rs774802948 |
294 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA3294527 rs774802948 |
294 | V>D | No |
ClinGen ExAC gnomAD |
|
|
rs767475485 CA3294529 |
295 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA3294531 rs756282294 |
296 | E>G | No |
ClinGen ExAC gnomAD |
|
|
CA3294530 rs750576924 |
296 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs769203237 CA3294543 |
299 | K>E | No |
ClinGen ExAC gnomAD |
|
|
CA360066394 rs1200485303 |
301 | V>M | No |
ClinGen TOPMed |
|
|
CA3294546 rs369518478 |
308 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
RCV000483988 CA3294545 RCV000418997 rs369518478 |
308 | V>M | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA360066519 rs1358733089 |
311 | P>S | No |
ClinGen TOPMed |
|
|
CA360066526 rs1290995704 |
312 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
rs762297823 CA360066541 |
313 | S>F | No |
ClinGen ExAC gnomAD |
|
|
CA3294547 rs774749463 |
313 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs762297823 CA3294548 |
313 | S>Y | No |
ClinGen ExAC gnomAD |
|
|
rs768139940 CA3294549 |
314 | D>E | No |
ClinGen ExAC gnomAD |
|
|
CA360066567 rs1464959353 |
315 | Y>F | No |
ClinGen TOPMed gnomAD |
|
|
CA360066565 rs1464959353 |
315 | Y>S | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 316 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs760747460 CA3294551 |
317 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs766388728 CA3294552 |
318 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA3294553 rs754072844 |
318 | R>K | No |
ClinGen ExAC gnomAD |
|
|
rs759876029 CA3294554 |
319 | V>D | No |
ClinGen ExAC gnomAD |
|
|
rs1476694604 CA360066649 |
321 | S>R | No |
ClinGen gnomAD |
|
|
CA360066667 rs1334082483 |
322 | P>R | No |
ClinGen TOPMed |
|
|
CA3294555 rs763959728 |
323 | M>V | No |
ClinGen ExAC gnomAD |
|
|
CA360066705 rs1389205291 |
325 | Y>C | No |
ClinGen gnomAD |
|
|
CA360066722 rs1324293462 |
326 | S>F | No |
ClinGen TOPMed |
|
|
CA3294557 rs757009047 |
327 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs750351587 CA3294559 |
328 | N>S | No |
ClinGen ExAC gnomAD |
|
|
rs1447541610 CA360066768 |
330 | K>R | No |
ClinGen gnomAD |
|
|
rs1407437853 CA360066783 |
331 | V>A | No |
ClinGen TOPMed |
|
|
CA360066776 rs1285212338 |
331 | V>M | No |
ClinGen gnomAD |
|
|
CA360066794 rs1392356550 |
332 | N>S | No |
ClinGen TOPMed |
|
|
rs1381791920 CA360066813 |
333 | D>E | No |
ClinGen gnomAD |
|
|
rs1554055471 RCV000522545 CA360066817 |
334 | K>E | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
COSM1737850 RCV000193804 CA207538 rs201673353 |
335 | R>Q | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA3294560 rs372766137 |
335 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 337 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA360066866 rs1178930952 |
338 | P>T | No |
ClinGen gnomAD |
|
|
RCV000598779 rs1303392945 |
339 | E>missing | No |
ClinVar dbSNP |
|
|
rs758540698 RCV000723062 |
339 | E>missing | No |
ClinVar dbSNP |
|
| TCGA novel | 344 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3294562 rs748920391 |
345 | T>A | No |
ClinGen ExAC TOPMed |
|
|
CA3294563 rs377673456 |
345 | T>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1275859439 CA360066946 |
346 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA360066945 rs1275859439 |
346 | P>Q | No |
ClinGen gnomAD |
|
|
rs1561353176 CA360067342 |
348 | P>R | No |
ClinGen Ensembl |
|
|
rs1268840215 CA360067356 |
349 | E>V | No |
ClinGen TOPMed |
|
| TCGA novel | 350 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3294573 rs752981648 |
351 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
RCV001268433 rs1769684609 |
352 | Q>* | No |
ClinVar dbSNP |
|
|
rs1310931080 CA360067413 |
354 | L>I | No |
ClinGen TOPMed |
|
|
rs761620839 CA360067419 |
354 | L>P | No |
ClinGen ExAC gnomAD |
|
|
CA3294574 rs761620839 |
354 | L>R | No |
ClinGen ExAC gnomAD |
|
|
CA3294575 rs767248776 |
355 | P>S | Variant assessed as Somatic; 0.0001106 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA360067466 rs1280315953 |
358 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA360067524 rs1295861907 |
363 | F>V | No |
ClinGen TOPMed |
|
|
rs1432438158 CA360067536 |
364 | R>K | No |
ClinGen TOPMed |
|
|
rs1432438158 CA360067538 |
364 | R>T | No |
ClinGen TOPMed |
|
|
rs756058631 CA3294577 |
367 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs374647565 CA3294578 |
367 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs780221255 CA3294579 |
368 | Y>* | No |
ClinGen ExAC gnomAD |
|
|
rs1008510904 CA120715332 |
368 | Y>C | No |
ClinGen TOPMed |
|
|
CA360067596 rs1477747130 |
369 | S>G | No |
ClinGen gnomAD |
|
|
CA360067595 rs1477747130 |
369 | S>R | No |
ClinGen gnomAD |
|
|
rs754492560 CA3294582 |
371 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 371 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs754492560 CA3294581 |
371 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1428033311 CA360067640 |
372 | G>D | No |
ClinGen gnomAD |
|
|
CA360067646 rs1307862522 |
373 | N>H | No |
ClinGen gnomAD |
|
|
CA3294583 rs747773983 |
373 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA120715334 rs1019524583 |
375 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
rs996156938 CA120715335 |
376 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA360067702 rs1276072946 |
377 | P>A | No |
ClinGen gnomAD |
|
|
rs377718385 CA3294585 |
378 | S>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1275167618 CA360067725 |
379 | K>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1483916225 CA360067730 |
379 | K>R | No |
ClinGen gnomAD |
|
|
CA360067749 rs1452067293 |
381 | A>T | No |
ClinGen gnomAD |
|
|
rs1199725583 CA360067757 |
381 | A>V | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 384 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1254943933 CA360067827 |
387 | A>T | No |
ClinGen gnomAD |
|
|
CA360067857 rs1318033189 |
389 | R>T | No |
ClinGen TOPMed |
|
| TCGA novel | 390 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 392 | R>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA360067916 rs1432035763 |
393 | T>R | No |
ClinGen gnomAD |
|
|
CA3294588 rs771398721 |
394 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs547569464 CA3294589 |
395 | Q>P | No |
ClinGen 1000Genomes ExAC |
|
|
rs1387834552 CA360067969 |
397 | H>L | No |
ClinGen TOPMed gnomAD |
|
|
rs759632258 CA3294590 |
397 | H>Q | No |
ClinGen ExAC gnomAD |
|
|
CA360067971 rs1387834552 |
397 | H>R | No |
ClinGen TOPMed gnomAD |
|
|
CA3294591 rs370970569 |
398 | Y>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs144743806 CA3294593 |
402 | Y>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA3294594 rs539541122 |
406 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs772940305 CA3294596 |
407 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA3294597 rs760660535 |
408 | S>Y | No |
ClinGen ExAC gnomAD |
|
|
rs766241016 CA3294598 |
410 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 413 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| TCGA novel | 414 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs753783440 CA360068098 |
415 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753783440 COSM3828357 CA3294599 |
415 | D>N | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA3294600 rs754431353 |
416 | W>* | No |
ClinGen ExAC |
|
|
CA3294601 rs764755867 |
417 | I>S | No |
ClinGen ExAC gnomAD |
|
|
CA3294602 rs752361069 |
418 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1294201213 CA360068167 |
421 | P>Q | No |
ClinGen TOPMed |
|
|
rs1487003753 CA360068165 |
421 | P>T | No |
ClinGen gnomAD |
|
|
CA360068188 rs1198939910 |
423 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
rs1232096920 CA360068202 |
424 | T>S | No |
ClinGen gnomAD |
|
|
CA3294613 rs774641856 |
425 | S>L | No |
ClinGen ExAC |
|
|
rs1561354402 RCV000722185 |
426 | D>missing | No |
ClinVar dbSNP |
|
|
rs1279700050 CA360068225 |
426 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
CA360068250 rs1278703420 |
427 | Q>H | No |
ClinGen TOPMed |
|
|
CA3294615 rs766179800 |
435 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294616 rs776507123 |
440 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294617 rs759507153 |
442 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA360068471 rs1472531578 |
443 | Y>C | No |
ClinGen gnomAD |
|
|
rs1159319833 CA360068499 |
445 | S>T | No |
ClinGen gnomAD |
|
|
CA360068567 rs1490647080 |
450 | L>F | No |
ClinGen gnomAD |
|
|
rs1490647080 CA360068566 |
450 | L>I | No |
ClinGen gnomAD |
|
|
rs1168632232 CA360068578 |
451 | D>N | No |
ClinGen TOPMed |
|
|
CA360068620 rs1430321238 |
453 | I>S | No |
ClinGen TOPMed |
|
|
CA360068649 rs1424431282 |
455 | K>R | No |
ClinGen TOPMed |
|
|
rs1346442750 CA360068696 |
459 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1346442750 CA360068697 |
459 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
rs576070306 CA3294618 |
459 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1212096958 CA360068714 |
460 | L>F | No |
ClinGen TOPMed |
|
|
rs1002907455 CA120715420 |
461 | D>Y | No |
ClinGen TOPMed gnomAD |
|
| TCGA novel | 463 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1057461668 CA120715421 |
463 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA3294619 rs543078186 |
465 | D>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA3294620 rs758064155 |
467 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA360068820 rs1286187665 |
468 | R>K | No |
ClinGen gnomAD |
|
|
rs1228911590 CA360068852 |
470 | E>G | No |
ClinGen gnomAD |
|
|
rs1232578484 CA360068863 |
471 | S>G | No |
ClinGen TOPMed |
|
|
CA360068901 rs1353523854 |
473 | E>D | No |
ClinGen TOPMed |
|
|
rs763585891 CA3294621 |
475 | M>V | No |
ClinGen ExAC TOPMed |
|
|
CA120715581 rs991819596 |
478 | A>D | No |
ClinGen TOPMed |
|
|
rs1468714639 CA360069570 |
479 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1385987976 CA360069625 |
482 | N>S | No |
ClinGen TOPMed |
|
|
rs1469011242 CA360069691 |
487 | V>A | No |
ClinGen TOPMed |
|
|
CA3294633 rs370469574 CA120715622 |
492 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA360069815 rs1273015431 |
493 | Y>C | No |
ClinGen gnomAD |
|
| TCGA novel | 495 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA3294634 rs748397152 |
497 | K>E | No |
ClinGen ExAC |
|
|
CA3294635 rs770678727 |
501 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA3294636 RCV001562216 rs776456723 |
504 | K>N | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs1206241877 CA360069969 |
504 | K>Q | No |
ClinGen gnomAD |
|
|
CA360069987 rs1487770795 |
505 | S>N | No |
ClinGen gnomAD |
|
|
rs1190173129 CA360069995 |
505 | S>R | No |
ClinGen gnomAD |
|
|
rs759455704 CA3294637 |
509 | H>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1384727036 CA360070057 |
510 | I>M | No |
ClinGen TOPMed |
|
|
CA360070052 rs1561356600 |
510 | I>V | No |
ClinGen Ensembl |
|
|
rs1455354961 CA360070058 |
511 | K>E | No |
ClinGen gnomAD |
|
|
CA3294638 rs769685888 |
513 | M>V | No |
ClinGen ExAC gnomAD |
|
|
rs1389105586 CA360070082 |
514 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
rs1389105586 CA360070084 |
514 | V>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1430187686 CA360070099 |
516 | D>V | No |
ClinGen gnomAD |
|
|
rs1348093086 CA360070107 |
517 | Y>* | No |
ClinGen gnomAD |
|
|
CA3294639 rs775502641 |
517 | Y>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs762310597 CA3294641 |
519 | R>T | No |
ClinGen ExAC gnomAD |
|
|
rs762472081 CA3294642 |
523 | T>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs763692440 CA3294643 |
523 | T>Q | No |
ClinGen ExAC TOPMed gnomAD |
1 associated diseases with Q16625
[MIM: 251290]: Pseudo-TORCH syndrome 1 (PTORCH1)
An autosomal recessive neurologic disorder with characteristic clinical and neuroradiologic features that mimic intrauterine TORCH infection in the absence of evidence of infection. Affected individuals have congenital microcephaly, intracranial calcifications, and severe developmental delay. {ECO:0000269|PubMed:20727516}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal recessive neurologic disorder with characteristic clinical and neuroradiologic features that mimic intrauterine TORCH infection in the absence of evidence of infection. Affected individuals have congenital microcephaly, intracranial calcifications, and severe developmental delay. {ECO:0000269|PubMed:20727516}. Note=The disease is caused by variants affecting the gene represented in this entry.
13 GO annotations of cellular component
| Name | Definition |
|---|---|
| apical plasma membrane | The region of the plasma membrane located at the apical end of the cell. |
| apicolateral plasma membrane | The apical end of the lateral plasma membrane of epithelial cells. |
| bicellular tight junction | An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes. |
| cell junction | A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella. |
| cell leading edge | The area of a motile cell closest to the direction of movement. |
| cell-cell junction | A cell junction that forms a connection between two or more cells of an organism; excludes direct cytoplasmic intercellular bridges, such as ring canals in insects. |
| cytoplasmic vesicle | A vesicle found in the cytoplasm of a cell. |
| endocytic vesicle | A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting. |
| integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
| lysosomal membrane | The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| protein-containing complex | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. |
| tight junction | A cell-cell junction that seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| protein domain specific binding | Binding to a specific domain of a protein. |
14 GO annotations of biological process
| Name | Definition |
|---|---|
| bicellular tight junction assembly | The aggregation, arrangement and bonding together of a set of components to form a tight junction, an occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet. |
| cell-cell junction organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells. |
| maintenance of blood-brain barrier | Maintaining the structure and function of the blood-brain barrier, thus ensuring specific regulated transport of substances (e.g. macromolecules, small molecules, ions) into the brain, and out of the brain into the blood circulation. |
| negative regulation of gene expression | Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| negative regulation of protein phosphorylation | Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein. |
| positive regulation of blood-brain barrier permeability | Any process that increases blood-brain barrier permeability, the quality of the blood-brain barrier that allows for a controlled passage of substances (e.g. macromolecules, small molecules, ions) into and out of the brain. |
| positive regulation of gene expression | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA). |
| positive regulation of glucose import | Any process that activates or increases the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle. |
| positive regulation of lamellipodium assembly | Any process that increases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell. |
| positive regulation of microtubule polymerization | Any process that activates or increases the frequency, rate or extent of microtubule polymerization. |
| positive regulation of wound healing | Any process that increases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury. |
| protein localization to cell leading edge | A process in which a protein is transported to, or maintained in, a location within a cell leading edge. |
| protein-containing complex assembly | The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex. |
| regulation of glucose transmembrane transport | Any process that modulates the frequency, rate or extent of glucose transport across a membrane. Glucose transport is the directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
4 homologous proteins in AiPD
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSSRPLESPP | PYRPDEFKPN | HYAPSNDIYG | GEMHVRPMLS | QPAYSFYPED | EILHFYKWTS |
| 70 | 80 | 90 | 100 | 110 | 120 |
| PPGVIRILSM | LIIVMCIAIF | ACVASTLAWD | RGYGTSLLGG | SVGYPYGGSG | FGSYGSGYGY |
| 130 | 140 | 150 | 160 | 170 | 180 |
| GYGYGYGYGG | YTDPRAAKGF | MLAMAAFCFI | AALVIFVTSV | IRSEMSRTRR | YYLSVIIVSA |
| 190 | 200 | 210 | 220 | 230 | 240 |
| ILGIMVFIAT | IVYIMGVNPT | AQSSGSLYGS | QIYALCNQFY | TPAATGLYVD | QYLYHYCVVD |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PQEAIAIVLG | FMIIVAFALI | IFFAVKTRRK | MDRYDKSNIL | WDKEHIYDEQ | PPNVEEWVKN |
| 310 | 320 | 330 | 340 | 350 | 360 |
| VSAGTQDVPS | PPSDYVERVD | SPMAYSSNGK | VNDKRFYPES | SYKSTPVPEV | VQELPLTSPV |
| 370 | 380 | 390 | 400 | 410 | 420 |
| DDFRQPRYSS | GGNFETPSKR | APAKGRAGRS | KRTEQDHYET | DYTTGGESCD | ELEEDWIREY |
| 430 | 440 | 450 | 460 | 470 | 480 |
| PPITSDQQRQ | LYKRNFDTGL | QEYKSLQSEL | DEINKELSRL | DKELDDYREE | SEEYMAAADE |
| 490 | 500 | 510 | 520 | ||
| YNRLKQVKGS | ADYKSKKNHC | KQLKSKLSHI | KKMVGDYDRQ | KT |