Q0P4R6
Gene name |
rbm46 |
Protein name |
Probable RNA-binding protein 46 |
Names |
RNA-binding motif protein 46 |
Species |
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) |
KEGG Pathway |
xtr:779956 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q0P4R6
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q0P4R6-F1 | Predicted | AlphaFoldDB |
No variants for Q0P4R6
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for Q0P4R6 | |||||
No associated diseases with Q0P4R6
5 regional properties for Q0P4R6
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | RNA recognition motif domain | 61 - 139 | IPR000504-1 |
| domain | RNA recognition motif domain | 141 - 223 | IPR000504-2 |
| domain | RNA recognition motif domain | 236 - 308 | IPR000504-3 |
| domain | Probable RNA-binding protein 46, RNA recognition motif 2 | 139 - 223 | IPR034435 |
| domain | RBM46, double-stranded RNA binding domain | 392 - 469 | IPR044462 |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| mRNA binding | Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| RNA binding | Binding to an RNA molecule or a portion thereof. |
No GO annotations of biological process
| Name | Definition |
|---|---|
| No GO annotations for biological process |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| A0AV96 | RBM47 | RNA-binding protein 47 | Homo sapiens (Human) | PR |
| Q8TBY0 | RBM46 | Probable RNA-binding protein 46 | Homo sapiens (Human) | PR |
| P86049 | Rbm46 | Probable RNA-binding protein 46 | Mus musculus (Mouse) | PR |
| Q0P4R6 | rbm46 | Probable RNA-binding protein 46 | Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MEDNCTDMFN | GCSKFDISIQ | TQVALLALID | NTGYTMVQVN | GQRKFGGPPP | GWEGPPPPRG |
| 70 | 80 | 90 | 100 | 110 | 120 |
| CEVFVGKIPR | DMYEDKLVPL | FARAGKIYEF | RLMMEFSGEN | RGYAFVMYTN | KEEALLAIRM |
| 130 | 140 | 150 | 160 | 170 | 180 |
| LNNYEICQGK | FIGVCVSLDN | CRLFIGSIPQ | EKRKEEILEE | MKKVTEGVMD | VIVYPSATDK |
| 190 | 200 | 210 | 220 | 230 | 240 |
| TKNRGFAFVM | YESHRAAAMA | RRKLIPGPFQ | LWGHTIKVAW | ASPEKEVDEE | TMQKVKVLYV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| RNLMMSTTEE | TIKAEFNRYK | PGVVERVKKI | RDYAFVHFFR | RDYAIAAMSV | MNGRLIDGAR |
| 310 | 320 | 330 | 340 | 350 | 360 |
| IEVTLAKPVN | KEAAWRQNGN | GHMNANSECL | LNFANKEGSQ | KALDMCSNVP | AYLNNPNSPT |
| 370 | 380 | 390 | 400 | 410 | 420 |
| FLEPETCTYP | CIPGTKLTPI | NLYSLKIHHF | HSAVMHLEYF | CYKNNWSFPE | YYLYSTTGQD |
| 430 | 440 | 450 | 460 | 470 | 480 |
| GKMLLAYKVI | LPAITGNTNS | YFMPDKLCSF | VEDAKELAAQ | FTLMHLDYSY | HPTSGKNISL |
| 490 | 500 | 510 | 520 | 530 | |
| PSTAATSGTS | GVLPYTPKPY | SYSSYPSSPN | VSLTNGGSVG | KQLYVSNQAS | YFSG |