Q04695
Gene name |
KRT17 |
Protein name |
Keratin, type I cytoskeletal 17 |
Names |
39.1, Cytokeratin-17, CK-17, Keratin-17, K17 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:3872 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q04695
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q04695-F1 | Predicted | AlphaFoldDB |
442 variants for Q04695
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
CA216605 VAR_072441 rs28928898 RCV000056507 |
88 | M>K | Pachyonychia congenita 2 (pc2) PC2 [Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
CA216606 RCV000056508 rs28928898 VAR_010512 RCV000015696 |
88 | M>T | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 and SM [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
| VAR_072442 | 91 | L>P | PC2 [UniProt] | Yes | UniProt |
|
VAR_003847 RCV000056510 CA216607 rs28928896 RCV000015688 |
92 | N>D | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
VAR_003848 RCV000056509 CA124153 rs28928896 RCV000015691 |
92 | N>H | Steatocystoma multiplex Pachyonychia congenita 2 (pc2) SM [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
rs59151893 RCV000015689 RCV000056512 CA216610 RCV002496373 RCV001836709 VAR_003849 |
92 | N>S | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
| VAR_072443 | 92 | N>del | PC2 [UniProt] | Yes | UniProt |
|
RCV000015697 rs57674130 RCV000056514 |
94 | R>missing | Pachyonychia congenita 2 [ClinVar] | Yes |
ClinVar dbSNP |
|
CA124156 rs58730926 RCV000114415 RCV000015694 VAR_010513 COSM436599 RCV000056513 |
94 | R>C | ovary Pachyonychia congenita 2 Variant assessed as Somatic; impact. Steatocystoma multiplex Pachyonychia congenita 2 (pc2) breast PC2 and SM [Cosmic, ClinVar, NCI-TCGA, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt NCI-TCGA TOPMed dbSNP gnomAD |
|
RCV000114414 RCV002496374 COSM3402893 VAR_003850 RCV000056515 RCV000015692 CA124154 rs28928897 |
94 | R>H | Pachyonychia congenita 2 Variant assessed as Somatic; impact. central_nervous_system Steatocystoma multiplex Pachyonychia congenita 2 (pc2) SM and PC2 [ClinVar, NCI-TCGA, Cosmic, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
|
CA216613 RCV000056516 VAR_017068 rs28928897 RCV000015698 |
94 | R>P | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
| VAR_017069 | 94 | R>del | PC2 [UniProt] | Yes | UniProt |
|
rs28928899 CA216615 VAR_017071 RCV000056518 RCV000015700 |
95 | L>P | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
rs28928899 CA216614 RCV000056517 RCV000015699 VAR_017070 |
95 | L>Q | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
RCV000015701 rs121912478 RCV000255904 RCV002494801 |
97 | S>missing | Pachyonychia congenita 2 [ClinVar] | Yes |
ClinVar dbSNP |
| VAR_017072 | 97 | S>del | PC2 [UniProt] | Yes | UniProt |
|
RCV000056521 CA216620 RCV000015690 rs28933088 VAR_003851 |
98 | Y>D | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
VAR_017073 rs28933089 RCV000056523 CA216623 RCV000015702 |
99 | L>P | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
RCV000056524 CA216624 rs59977263 RCV000015703 VAR_017074 |
102 | V>M | Pachyonychia congenita 2 Pachyonychia congenita 2 (pc2) PC2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
|
rs267607412 RCV000056526 VAR_037083 CA216627 |
109 | N>D | PC2 [UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
|
VAR_072444 rs56690581 RCV000056506 CA216604 |
388 | L>P | PC2 [UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
| VAR_072445 | 388 | L>R | PC2 [UniProt] | Yes | UniProt |
|
CA399514018 rs1234293016 |
2 | T>N | No |
ClinGen gnomAD |
|
|
CA399514015 rs1219056740 |
3 | T>A | No |
ClinGen gnomAD |
|
|
rs1235064745 CA399514006 |
4 | S>F | No |
ClinGen gnomAD |
|
|
rs11553458 CA399514010 |
4 | S>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs11553458 CA8563887 |
4 | S>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs761633581 CA8563886 |
5 | I>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1286509362 CA399514002 |
5 | I>N | No |
ClinGen gnomAD |
|
|
rs1286509362 CA399514001 |
5 | I>T | No |
ClinGen gnomAD |
|
|
rs1327072340 CA399514003 |
5 | I>V | No |
ClinGen TOPMed gnomAD |
|
|
CA8563885 rs79896664 RCV000961490 |
6 | R>C | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
CA8563884 rs768150902 |
6 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs553672396 CA8563882 |
7 | Q>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8563880 rs769369981 |
9 | T>N | No |
ClinGen ExAC |
|
|
CA399513924 rs1266296732 |
12 | S>G | No |
ClinGen TOPMed |
|
|
rs1177336937 CA399513880 |
15 | K>R | No |
ClinGen TOPMed |
|
|
rs781364097 CA8563878 |
16 | G>A | No |
ClinGen ExAC gnomAD |
|
|
rs781364097 CA399513866 |
16 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs1409637177 CA399513834 |
18 | S>Y | No |
ClinGen gnomAD |
|
|
CA8563875 rs558623005 |
19 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs558623005 CA8563874 |
19 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs765583417 CA8563872 |
21 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs765583417 CA290686318 |
21 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399513806 rs1366910575 |
21 | G>R | No |
ClinGen gnomAD |
|
| rs753167272 | 22 | G>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs759780535 CA8563871 |
22 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399513793 rs1387497386 |
22 | G>R | No |
ClinGen TOPMed |
|
|
CA399513766 rs1309344989 |
23 | G>A | No |
ClinGen gnomAD |
|
| rs753167272 | 23 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8563866 rs750279151 |
23 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563864 rs367544262 |
24 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
rs1443619298 CA399513735 |
25 | S>P | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA8563860 rs374384105 |
26 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8563859 rs745486930 |
26 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563858 rs745486930 |
26 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290686239 rs554504293 |
27 | T>I | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs554504293 CA8563857 |
27 | T>N | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA399513709 rs1597693301 |
27 | T>P | No |
ClinGen Ensembl |
|
|
CA8563856 rs371000502 |
29 | C>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563852 rs2229512 |
30 | R>P | No |
ClinGen 1000Genomes ESP TOPMed gnomAD |
|
|
CA8563853 rs2229512 COSM2157344 |
30 | R>Q | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP TOPMed gnomAD |
|
CA8563855 rs747613789 COSM3819578 |
30 | R>W | breast [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA399513640 rs1295462977 |
32 | S>T | No |
ClinGen TOPMed |
|
|
CA8563849 rs368662815 |
34 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs758929957 CA8563850 |
34 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs368662815 CA399513600 |
34 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8563846 rs755266373 |
36 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399513553 rs1311792391 |
37 | A>D | No |
ClinGen TOPMed gnomAD |
|
|
CA399513551 rs1311792391 |
37 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
CA8563843 rs757015302 |
38 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs764050721 CA8563841 |
39 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290686210 rs1043719695 |
39 | S>P | No |
ClinGen TOPMed |
|
|
rs375582148 CA8563839 |
42 | L>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs775031648 CA8563838 |
44 | S>F | No |
ClinGen ExAC gnomAD |
|
|
COSM302513 CA399513418 rs1294947365 |
47 | G>S | Variant assessed as Somatic; impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
CA8563836 rs759301828 |
47 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA399513394 rs1430218782 |
49 | G>R | No |
ClinGen gnomAD |
|
|
CA8563833 rs201047424 |
51 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA399513358 rs1482978208 |
51 | T>N | No |
ClinGen TOPMed gnomAD |
|
|
rs201047424 CA8563834 |
51 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs773659419 CA399513346 |
52 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563832 rs773659419 |
52 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563830 CA399513326 rs748631498 |
53 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
| rs761469971 | 54 | G>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs570711033 CA8563829 |
54 | G>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs754997516 CA8563826 |
56 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399513226 rs1311238669 |
57 | Y>D | No |
ClinGen gnomAD |
|
|
CA399513182 rs1355547921 |
58 | S>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA399513135 rs200841795 |
60 | C>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1314250126 CA399513148 |
60 | C>S | No |
ClinGen gnomAD |
|
|
CA8563824 rs200841795 |
60 | C>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563823 rs142502852 |
61 | Y>C | No |
ClinGen ESP ExAC gnomAD |
|
|
CA399513104 rs142502852 |
61 | Y>F | No |
ClinGen ESP ExAC gnomAD |
|
|
CA8563822 rs11553455 |
62 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290686193 rs11553455 |
62 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1190242046 CA399513077 |
62 | S>I | No |
ClinGen TOPMed |
|
|
CA8563821 rs763856669 |
62 | S>R | No |
ClinGen ExAC gnomAD |
|
|
rs1421493202 CA399513061 |
63 | F>L | No |
ClinGen TOPMed |
|
|
CA290686189 rs765464535 |
65 | S>F | No |
ClinGen gnomAD |
|
|
CA399513011 rs1477627658 |
66 | G>S | No |
ClinGen TOPMed |
|
|
CA8563819 rs752629599 |
68 | G>D | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 68 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1412586091 CA399512944 |
69 | Y>F | No |
ClinGen TOPMed |
|
|
rs1482183368 CA399512934 |
70 | G>S | No |
ClinGen gnomAD |
|
|
CA8563818 rs371521134 |
71 | S>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399512891 rs1196700871 |
72 | S>G | No |
ClinGen gnomAD |
|
|
CA8563816 rs368097553 |
74 | G>R | No |
ClinGen ESP ExAC |
|
|
rs200102896 CA8563815 |
74 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs760378776 CA8563813 |
75 | G>D | No |
ClinGen ExAC gnomAD |
|
|
CA399512832 rs1294575047 |
75 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs760378776 CA399512823 |
75 | G>V | No |
ClinGen ExAC gnomAD |
|
|
CA399512815 rs1329150569 |
76 | V>I | No |
ClinGen gnomAD |
|
|
CA399512786 rs1218892088 |
77 | D>G | No |
ClinGen TOPMed |
|
|
rs11553454 CA290686141 |
78 | G>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs11553454 CA8563811 |
78 | G>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1028399478 CA290686138 |
79 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
CA399512728 rs1313304776 |
80 | L>P | No |
ClinGen TOPMed |
|
|
rs769139580 CA8563807 |
81 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs769139580 CA8563808 |
81 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399512680 rs1194441798 |
83 | G>S | No |
ClinGen TOPMed |
|
|
CA399512653 rs1363382784 |
84 | E>G | No |
ClinGen gnomAD |
|
|
rs1421175248 CA399512618 |
86 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1265695783 CA399512589 |
87 | T>I | No |
ClinGen gnomAD |
|
|
rs1205697518 CA399512570 |
88 | M>I | No |
ClinGen TOPMed gnomAD |
|
|
CA8563803 rs746060683 |
89 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
CA399512555 rs1171786524 |
89 | Q>R | No |
ClinGen TOPMed |
|
|
CA399512546 rs1469282035 |
90 | N>H | No |
ClinGen gnomAD |
|
|
RCV000056511 rs267607414 |
92 | N>missing | No |
ClinVar dbSNP |
|
|
rs754891141 CA8563798 |
96 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs267607416 RCV000056519 |
96 | A>missing | No |
ClinVar dbSNP |
|
|
CA399512404 rs1329053108 |
98 | Y>* | No |
ClinGen gnomAD |
|
|
rs267607415 RCV000056522 |
99 | L>missing | No |
ClinVar dbSNP |
|
|
rs765879104 COSM1212794 CA8563796 |
103 | R>C | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs1396543456 CA399512332 |
103 | R>H | No |
ClinGen gnomAD |
|
|
CA8563795 rs760468628 |
104 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs1329065160 CA399512302 |
106 | E>K | No |
ClinGen TOPMed |
|
|
RCV000885318 COSM1520958 CA8563794 rs150004075 |
107 | E>K | lung [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA290686013 rs11553460 |
108 | A>T | No |
ClinGen Ensembl |
|
|
CA8563793 rs762272035 |
111 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1597692917 CA399512160 |
114 | V>G | No |
ClinGen Ensembl |
|
|
CA399512116 rs1455000863 |
116 | I>S | No |
ClinGen gnomAD |
|
|
CA8563790 rs375507162 |
117 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563791 rs375507162 |
117 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs775474574 CA8563789 |
117 | R>H | No |
ClinGen ExAC gnomAD |
|
|
rs1410936135 CA399512069 |
118 | D>E | No |
ClinGen gnomAD |
|
|
rs1567749671 CA399512063 |
119 | W>R | No |
ClinGen Ensembl |
|
|
rs1446995852 CA399511969 |
122 | R>S | No |
ClinGen gnomAD |
|
|
CA290685985 rs879219604 |
123 | Q>P | No |
ClinGen Ensembl |
|
|
rs879219604 CA399511952 |
123 | Q>R | No |
ClinGen Ensembl |
|
|
rs781408687 CA8563788 |
124 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs781408687 CA8563786 |
124 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290685983 rs371097627 |
124 | A>T | No |
ClinGen ESP TOPMed |
|
|
CA8563787 rs781408687 |
124 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563782 rs754908705 |
125 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs754908705 CA8563781 |
125 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs747955715 CA8563783 |
125 | P>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA |
|
CA399511883 rs1234687849 |
126 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
RCV000996533 CA8563777 rs560097504 COSM1662522 |
127 | P>S | kidney [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA8563775 rs541698783 |
128 | A>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8563774 rs541698783 |
128 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8563771 rs374327168 |
129 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA8563772 rs374327168 |
129 | R>G | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs564768263 CA8563770 |
129 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs1400280178 CA399511748 |
131 | Y>H | No |
ClinGen TOPMed gnomAD |
|
|
rs776054687 CA8563769 |
131 | Y>S | No |
ClinGen ExAC gnomAD |
|
|
rs1443634942 CA399511695 |
133 | Q>R | No |
ClinGen TOPMed |
|
|
CA399511583 rs1475360701 |
137 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
CA399511560 rs1243238106 |
138 | I>T | No |
ClinGen gnomAD |
|
|
CA8563765 rs771187547 |
142 | Q>* | No |
ClinGen ExAC TOPMed gnomAD |
|
| TCGA novel | 142 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399511429 rs1281369645 |
143 | N>K | No |
ClinGen TOPMed |
|
|
CA399511423 rs1211153560 |
144 | K>E | No |
ClinGen gnomAD |
|
|
CA8563736 rs746448136 |
145 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399509608 rs1176275056 |
145 | I>M | No |
ClinGen gnomAD |
|
|
CA8563735 rs777489530 |
146 | L>F | No |
ClinGen ExAC gnomAD |
|
|
CA8563734 rs757951114 |
147 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA290685512 rs267604879 |
147 | T>P | No |
ClinGen Ensembl |
|
|
CA399509554 rs1336432577 |
148 | A>D | No |
ClinGen gnomAD |
|
|
rs755542251 CA8563731 |
150 | V>M | No |
ClinGen ExAC gnomAD |
|
|
rs1273768738 CA399509498 |
151 | D>H | No |
ClinGen TOPMed gnomAD |
|
|
CA8563729 rs766811684 |
154 | N>S | No |
ClinGen ExAC gnomAD |
|
|
CA8563727 rs750429009 |
158 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
CA8563726 rs191021601 |
159 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA399509307 rs1281608115 |
159 | I>V | No |
ClinGen gnomAD |
|
|
CA8563724 rs185719691 |
163 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA8563723 rs185719691 |
163 | R>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs759605871 CA8563722 |
163 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA399509145 rs1597692050 |
165 | A>V | No |
ClinGen Ensembl |
|
|
CA399509117 rs1157801603 |
167 | D>A | No |
ClinGen gnomAD |
|
|
CA290685500 rs908695920 |
167 | D>E | No |
ClinGen TOPMed |
|
|
CA399509103 rs1400904986 |
168 | D>N | No |
ClinGen gnomAD |
|
|
CA8563720 rs770709739 |
169 | F>C | No |
ClinGen ExAC gnomAD |
|
|
CA8563719 COSM436598 rs115084509 RCV000966029 |
170 | R>C | breast [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs560599599 CA8563718 |
170 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA399509052 rs560599599 |
170 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8563717 rs771791705 |
171 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA8563698 rs199897890 |
173 | F>V | No |
ClinGen ExAC |
|
|
rs747593947 CA8563697 |
174 | E>G | No |
ClinGen ExAC |
|
|
CA290685295 rs1034295153 |
175 | T>I | No |
ClinGen TOPMed |
|
|
rs1310615769 CA399508759 |
176 | E>D | No |
ClinGen gnomAD |
|
|
rs778552510 CA8563696 |
176 | E>K | No |
ClinGen ExAC gnomAD |
|
|
rs749685700 CA8563695 |
178 | A>S | No |
ClinGen ExAC gnomAD |
|
|
rs749685700 CA8563694 |
178 | A>T | No |
ClinGen ExAC gnomAD |
|
|
CA399508698 rs1314445903 |
179 | L>P | No |
ClinGen gnomAD |
|
|
rs780251083 CA8563693 |
180 | R>C | Variant assessed as Somatic; 4.619e-05 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563692 rs756693103 |
180 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs780251083 CA399508693 |
180 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs750881227 CA8563691 |
182 | S>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563689 rs376395535 |
183 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399508602 rs1185955115 |
184 | E>V | No |
ClinGen gnomAD |
|
|
CA8563687 rs751630739 |
186 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs758650944 CA8563685 |
189 | G>V | No |
ClinGen ExAC |
|
|
CA8563683 rs766061597 |
191 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs746200279 COSM979269 CA8563682 |
191 | R>H | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563681 rs746200279 |
191 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563680 rs767434042 |
192 | R>M | No |
ClinGen ExAC gnomAD |
|
|
rs1597691680 CA399508429 |
193 | V>G | No |
ClinGen Ensembl |
|
|
CA8563679 rs761336575 |
193 | V>L | No |
ClinGen ExAC gnomAD |
|
|
CA8563678 rs773812416 |
196 | E>* | No |
ClinGen ExAC gnomAD |
|
|
rs182165448 CA8563677 |
196 | E>D | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 197 | L>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399508281 rs1395505727 |
200 | A>V | No |
ClinGen gnomAD |
|
|
CA8563670 rs113335985 |
203 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs781562194 CA8563672 |
203 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399508193 rs1597691641 |
205 | E>Q | No |
ClinGen Ensembl |
|
|
CA8563669 rs377416724 |
206 | M>I | No |
ClinGen ESP ExAC gnomAD |
|
|
rs138650610 CA290685217 |
206 | M>T | No |
ClinGen ESP TOPMed |
|
|
CA290685209 rs199795046 |
208 | I>T | No |
ClinGen TOPMed gnomAD |
|
|
CA8563668 rs758738869 |
211 | L>H | No |
ClinGen ExAC gnomAD |
|
|
rs752861612 CA399507976 |
213 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1443692454 CA399507960 |
214 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA8563666 rs765436670 |
214 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA399507949 rs1271852814 |
215 | L>R | No |
ClinGen gnomAD |
|
|
rs755878402 CA8563665 |
217 | Y>H | No |
ClinGen ExAC gnomAD |
|
|
rs750187235 CA8563664 |
217 | Y>S | No |
ClinGen ExAC TOPMed |
|
|
rs372734202 CA8563663 |
219 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
CA399507862 rs1348742456 |
221 | N>D | No |
ClinGen TOPMed |
|
|
CA399507851 rs1236419899 |
221 | N>K | No |
ClinGen gnomAD |
|
|
CA399507830 rs150142591 |
222 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140804147 CA399507825 |
223 | E>* | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140804147 RCV000947822 CA8563661 |
223 | E>K | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs1446637109 CA399507810 |
224 | E>K | No |
ClinGen TOPMed |
|
|
CA399506453 rs1173463099 |
225 | E>Q | No |
ClinGen gnomAD |
|
|
CA399506417 rs1268334462 |
226 | M>V | No |
ClinGen TOPMed |
|
|
CA8563641 rs147053246 |
227 | N>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA8563639 rs759193608 |
228 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA290684916 rs979951170 |
228 | A>V | No |
ClinGen TOPMed |
|
|
rs761058018 COSM1493885 CA8563636 |
230 | R>* | kidney [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs137961542 CA8563635 |
230 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs137961542 CA8563634 |
230 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1126846 CA290684902 |
231 | G>A | No |
ClinGen Ensembl |
|
|
rs1484519975 CA399506257 |
232 | Q>R | No |
ClinGen gnomAD |
|
|
rs748209988 CA8563633 |
233 | V>L | No |
ClinGen ExAC gnomAD |
|
|
rs1346976326 CA399506206 |
234 | G>S | No |
ClinGen gnomAD |
|
|
CA399506196 rs1269356031 |
235 | G>C | No |
ClinGen gnomAD |
|
|
CA8563631 rs768810878 |
236 | E>D | No |
ClinGen ExAC gnomAD |
|
|
CA399506183 rs1417594265 |
236 | E>K | No |
ClinGen TOPMed |
|
| TCGA novel | 237 | I>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs1437160406 CA399506104 |
238 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
rs749514229 CA8563629 |
241 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563628 rs781032798 |
242 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA8563626 rs751296003 |
243 | A>T | No |
ClinGen ExAC gnomAD |
|
|
rs758313483 CA8563624 |
245 | P>R | No |
ClinGen ExAC gnomAD |
|
|
CA399505932 rs1427803696 |
245 | P>S | No |
ClinGen gnomAD |
|
|
CA8563622 rs141092585 |
247 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759164750 CA8563621 |
248 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399505885 rs1195277775 |
248 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
CA8563619 rs766075355 |
250 | S>T | No |
ClinGen ExAC gnomAD |
|
|
COSM1662521 CA8563618 rs139367104 |
251 | R>C | kidney [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
|
CA8563617 COSM1179123 rs773674040 |
251 | R>H | prostate [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
rs773674040 CA399505750 |
251 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs773674040 CA399505756 |
251 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772497230 CA8563616 |
252 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762362263 CA8563615 |
254 | N>Y | No |
ClinGen ExAC gnomAD |
|
|
rs1292924721 CA399505638 |
255 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
CA399505637 rs1292924721 |
255 | E>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA8563613 rs768777699 |
256 | M>I | No |
ClinGen ExAC gnomAD |
|
|
rs1449130313 CA399505614 |
256 | M>L | No |
ClinGen TOPMed gnomAD |
|
|
COSM186810 CA8563612 rs368091501 |
257 | R>C | Variant assessed as Somatic; 0.0 impact. liver large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA290684840 rs368091501 |
257 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs200256057 CA290684838 |
257 | R>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
|
rs767853340 CA8563611 |
259 | Q>K | No |
ClinGen ExAC gnomAD |
|
|
rs769952554 CA8563610 |
260 | Y>C | No |
ClinGen ExAC gnomAD |
|
|
rs1397885600 CA399505544 |
260 | Y>H | No |
ClinGen gnomAD |
|
|
rs146900210 CA8563609 RCV000977423 |
262 | K>* | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs777510870 CA8563608 |
264 | A>S | No |
ClinGen ExAC gnomAD |
|
|
CA8563607 rs758314670 |
264 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs560576342 CA8563605 |
268 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
COSM1161191 rs753353264 CA8563603 |
268 | R>H | Variant assessed as Somatic; 0.0 impact. haematopoietic_and_lymphoid_tissue [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563604 rs753353264 |
268 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs766163349 CA8563602 |
269 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563601 rs755801047 COSM3819575 |
271 | A>V | breast [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
rs767912889 CA8563599 COSM436597 |
272 | E>K | Variant assessed as Somatic; 0.0 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs781660845 CA8563598 |
274 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA399505159 rs1412487515 |
277 | S>I | No |
ClinGen TOPMed |
|
|
CA399504931 rs1171580393 |
279 | T>R | No |
ClinGen gnomAD |
|
|
CA399504933 rs1381928510 |
279 | T>S | No |
ClinGen gnomAD |
|
|
rs1191794775 CA399504809 |
284 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA8563574 rs376512226 |
284 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563573 rs376512226 |
284 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399504782 rs1488767038 |
285 | E>D | No |
ClinGen gnomAD |
|
|
CA399504797 rs1215312325 |
285 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
|
CA399504755 rs1288557793 |
287 | A>T | No |
ClinGen gnomAD |
|
|
CA399504737 rs1272978963 |
288 | T>A | No |
ClinGen Ensembl |
|
|
CA399504727 rs1206902207 |
289 | N>D | No |
ClinGen TOPMed |
|
|
rs1254934719 CA399504706 |
290 | S>R | No |
ClinGen TOPMed |
|
|
CA399504649 rs1232590489 |
292 | L>P | No |
ClinGen TOPMed gnomAD |
|
|
rs376654012 CA8563571 |
294 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563570 rs748010574 |
295 | S>T | No |
ClinGen ExAC gnomAD |
|
|
CA8563569 rs773987443 |
296 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA8563568 rs768766243 |
298 | S>I | No |
ClinGen ExAC gnomAD |
|
|
CA399504592 rs749226489 |
298 | S>R | No |
ClinGen ExAC gnomAD |
|
|
CA8563566 rs142893574 |
301 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563564 rs745317353 |
304 | R>Q | No |
ClinGen ExAC gnomAD |
|
|
COSM1679805 rs1433893038 CA399504524 |
304 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
|
rs375243255 CA8563563 |
305 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1426722207 CA399504510 |
305 | R>H | Variant assessed as Somatic; 4.62e-05 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
| TCGA novel | 305 | R>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs375243255 CA399504516 |
305 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs1310147764 CA399504481 |
307 | M>T | No |
ClinGen TOPMed |
|
|
rs1417435075 CA399504461 |
308 | Q>R | No |
ClinGen gnomAD |
|
|
rs1400257867 CA399504448 |
309 | A>D | No |
ClinGen TOPMed |
|
|
CA399504430 rs1334550673 |
310 | L>F | No |
ClinGen TOPMed |
|
|
CA290684600 rs987888005 |
313 | E>V | No |
ClinGen TOPMed |
|
|
CA399504375 rs1478246116 |
314 | L>V | No |
ClinGen gnomAD |
|
|
rs756819379 CA8563562 |
315 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs145738125 CA8563561 |
315 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
| TCGA novel | 318 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399504276 rs1212848724 |
320 | M>T | No |
ClinGen gnomAD |
|
|
CA8563549 rs149778356 |
322 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs775583363 CA8563547 |
323 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs1319823227 CA399504192 |
327 | N>S | No |
ClinGen TOPMed |
|
|
COSM1578733 rs780535087 CA8563544 |
329 | A>V | meninges [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA399504166 rs1448988534 |
331 | T>I | No |
ClinGen gnomAD |
|
|
rs1597690541 CA399504154 |
333 | N>T | No |
ClinGen Ensembl |
|
|
CA8563541 rs146280868 |
334 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA290684486 rs755435069 |
334 | R>H | No |
ClinGen Ensembl |
|
|
rs535587265 CA8563540 |
335 | Y>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs752997574 CA8563539 |
336 | C>F | No |
ClinGen ExAC gnomAD |
|
|
rs1369304509 CA399504138 |
336 | C>S | No |
ClinGen gnomAD |
|
|
rs752997574 CA399504134 |
336 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
COSM1383218 CA8563537 rs143477910 |
337 | V>M | large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs749862409 CA8563536 |
338 | Q>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563535 rs766359801 |
341 | Q>R | No |
ClinGen ExAC gnomAD |
|
|
CA399504061 rs1356545892 |
342 | I>M | No |
ClinGen gnomAD |
|
|
CA8563533 rs750616688 |
344 | G>E | No |
ClinGen ExAC gnomAD |
|
|
rs1465734933 CA399504024 |
345 | L>P | No |
ClinGen TOPMed |
|
|
CA399504012 rs1303101349 |
346 | I>T | No |
ClinGen gnomAD |
|
|
rs775385085 CA8563530 |
349 | V>E | No |
ClinGen ExAC gnomAD |
|
|
rs142267571 CA8563531 |
349 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs1432627748 CA399503946 |
351 | E>K | No |
ClinGen TOPMed |
|
|
CA399503934 rs1199879004 |
351 | E>V | No |
ClinGen TOPMed |
|
|
rs1597690489 CA399503928 |
352 | Q>* | No |
ClinGen Ensembl |
|
|
rs1368753632 CA399503896 |
354 | A>S | No |
ClinGen gnomAD |
|
|
rs139939142 CA8563528 |
354 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs759367552 CA8563527 |
355 | Q>R | No |
ClinGen ExAC |
|
|
rs374932182 CA8563526 COSM1520960 |
357 | R>C | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
|
CA8563525 rs770339581 |
357 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
CA290684422 rs746458554 |
358 | C>* | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1158140967 CA399503846 |
358 | C>R | No |
ClinGen TOPMed |
|
|
rs756477246 CA8563523 |
359 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs756477246 CA290684415 |
359 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399503800 rs1380052098 |
360 | M>T | No |
ClinGen gnomAD |
|
|
rs1442044157 CA399503762 |
362 | Q>R | No |
ClinGen gnomAD |
|
|
rs1393829898 CA399503737 |
364 | N>H | No |
ClinGen gnomAD |
|
| TCGA novel | 365 | Q>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8563521 rs748554846 |
366 | E>K | No |
ClinGen ExAC gnomAD |
|
|
CA8563522 rs748554846 |
366 | E>Q | No |
ClinGen ExAC gnomAD |
|
|
rs1451677193 CA399503667 |
367 | Y>H | No |
ClinGen gnomAD |
|
|
CA399503591 rs1417435474 COSM1630189 |
371 | L>M | liver [Cosmic] | No |
ClinGen cosmic curated gnomAD |
|
CA216602 rs267607413 RCV000056505 |
371 | L>P | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA8563520 rs371775733 |
374 | K>R | No |
ClinGen ESP ExAC gnomAD |
|
|
rs199906402 CA8563519 |
375 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
COSM3742233 rs150564761 CA8563516 |
376 | R>Q | liver [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs200744890 CA8563517 |
376 | R>W | Variant assessed as Somatic; 0.0001848 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
|
rs376826218 CA8563515 |
378 | E>D | No |
ClinGen ESP ExAC gnomAD |
|
|
rs1232538010 CA399503426 |
378 | E>V | No |
ClinGen gnomAD |
|
|
CA399503401 rs1303560668 |
379 | Q>L | No |
ClinGen gnomAD |
|
|
CA399503339 rs1202779941 |
382 | A>G | No |
ClinGen gnomAD |
|
|
rs1360166116 CA399503349 |
382 | A>T | No |
ClinGen gnomAD |
|
|
CA8563514 rs368177544 |
385 | R>C | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs757519907 COSM1212796 CA8563513 |
385 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
|
CA8563512 rs752588997 |
386 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399503277 COSM1212795 rs1330476715 |
386 | R>H | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
|
rs1210438233 CA399503197 |
390 | G>E | No |
ClinGen TOPMed |
|
|
CA399503205 rs1378842447 |
390 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1263489642 CA399503125 |
392 | D>E | No |
ClinGen gnomAD |
|
|
rs760121926 CA8563508 |
392 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1471724677 CA399503133 |
392 | D>V | No |
ClinGen TOPMed |
|
|
rs760121926 CA8563507 |
392 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs772680772 CA8563506 |
393 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1277740028 CA399503081 |
394 | H>Y | No |
ClinGen gnomAD |
|
|
rs141710767 CA8563471 |
397 | Q>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA399502843 rs141710767 |
397 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs573316872 CA8563470 |
400 | K>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
| TCGA novel | 401 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
| rs774656236 | 402 | P>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA8563469 rs367560898 |
402 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA8563433 rs748122047 |
402 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563468 rs367560898 |
402 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs768826277 CA8563431 |
403 | V>A | No |
ClinGen ExAC gnomAD |
|
|
CA399500673 rs745704126 |
404 | T>I | No |
ClinGen ExAC gnomAD |
|
|
CA8563430 rs745704126 |
404 | T>N | No |
ClinGen ExAC gnomAD |
|
|
CA399500677 rs745704126 |
404 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs757242553 CA8563428 |
405 | T>S | No |
ClinGen ExAC gnomAD |
|
|
CA8563426 rs777503614 |
406 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs777503614 CA8563427 |
406 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563425 rs757939264 |
406 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs757939264 CA399500608 |
406 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs752095092 CA399500605 |
407 | Q>* | No |
ClinGen ExAC gnomAD |
|
|
rs752095092 CA8563424 |
407 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA8563423 rs200282135 |
407 | Q>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA399500546 rs1261318850 |
408 | V>A | No |
ClinGen gnomAD |
|
|
CA8563422 rs754643287 |
409 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
CA399500533 rs754643287 |
409 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563421 rs754301737 |
409 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399500492 rs766848922 |
410 | T>I | No |
ClinGen ExAC gnomAD |
|
|
rs766848922 CA8563420 |
410 | T>N | No |
ClinGen ExAC gnomAD |
|
|
rs773785522 CA8563418 |
413 | E>K | No |
ClinGen ExAC gnomAD |
|
| TCGA novel | 414 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA399500335 rs1220477241 |
415 | V>F | No |
ClinGen gnomAD |
|
|
rs1358765445 CA399500315 |
416 | Q>* | No |
ClinGen TOPMed |
|
|
CA399500269 rs1337890050 |
418 | G>C | No |
ClinGen gnomAD |
|
|
CA8563414 rs768916198 |
424 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA8563412 RCV000903034 rs148013099 COSM3771356 |
424 | R>H | pancreas [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA8563413 rs148013099 |
424 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1176808154 CA399500119 |
425 | E>G | No |
ClinGen gnomAD |
|
|
CA399500125 rs1420781470 |
425 | E>K | No |
ClinGen TOPMed |
|
|
CA399500071 rs1421659364 |
426 | Q>H | No |
ClinGen gnomAD |
|
|
CA399500051 rs1163205387 |
427 | V>A | No |
ClinGen gnomAD |
|
|
CA399500060 rs1170221471 |
427 | V>F | No |
ClinGen TOPMed gnomAD |
|
|
CA399500031 rs1478296843 |
428 | H>Q | No |
ClinGen gnomAD |
|
|
CA290683660 rs4079061 |
428 | H>R | No |
ClinGen Ensembl |
|
|
CA8563408 rs758225003 |
429 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA399499993 rs1597689694 |
430 | T>P | No |
ClinGen Ensembl |
|
|
rs1391829698 CA399499953 |
431 | T>N | No |
ClinGen gnomAD |
|
|
CA8563406 rs369304694 COSM300190 |
432 | R>C | lung large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
|
CA8563407 rs369304694 |
432 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs754747437 CA8563405 |
432 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
|
rs369304694 CA399499944 |
432 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
| TCGA novel | 433 | R>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
3 associated diseases with Q04695
[MIM: 167210]: Pachyonychia congenita 2 (PC2)
An autosomal dominant ectodermal dysplasia characterized by hypertrophic nail dystrophy resulting in onchyogryposis (thickening and increase in curvature of the nail), palmoplantar keratoderma and hyperhidrosis, follicular hyperkeratosis, multiple epidermal cysts, absent/sparse eyebrow and body hair, and by the presence of natal teeth. {ECO:0000269|PubMed:10571744, ECO:0000269|PubMed:11348474, ECO:0000269|PubMed:11874497, ECO:0000269|PubMed:11886499, ECO:0000269|PubMed:15102078, ECO:0000269|PubMed:15795125, ECO:0000269|PubMed:16250206, ECO:0000269|PubMed:16620218, ECO:0000269|PubMed:16625196, ECO:0000269|PubMed:17719747, ECO:0000269|PubMed:18547302, ECO:0000269|PubMed:19470054, ECO:0000269|PubMed:21326300, ECO:0000269|PubMed:23278621, ECO:0000269|PubMed:23855588, ECO:0000269|PubMed:7539673, ECO:0000269|PubMed:9008238, ECO:0000269|PubMed:9767294}. Note=The disease is caused by variants affecting the gene represented in this entry.
[MIM: 184500]: Steatocystoma multiplex (SM)
Disease characterized by round or oval cystic tumors widely distributed on the back, anterior trunk, arms, scrotum, and thighs. {ECO:0000269|PubMed:16620218, ECO:0000269|PubMed:9008238, ECO:0000269|PubMed:9767294}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant ectodermal dysplasia characterized by hypertrophic nail dystrophy resulting in onchyogryposis (thickening and increase in curvature of the nail), palmoplantar keratoderma and hyperhidrosis, follicular hyperkeratosis, multiple epidermal cysts, absent/sparse eyebrow and body hair, and by the presence of natal teeth. {ECO:0000269|PubMed:10571744, ECO:0000269|PubMed:11348474, ECO:0000269|PubMed:11874497, ECO:0000269|PubMed:11886499, ECO:0000269|PubMed:15102078, ECO:0000269|PubMed:15795125, ECO:0000269|PubMed:16250206, ECO:0000269|PubMed:16620218, ECO:0000269|PubMed:16625196, ECO:0000269|PubMed:17719747, ECO:0000269|PubMed:18547302, ECO:0000269|PubMed:19470054, ECO:0000269|PubMed:21326300, ECO:0000269|PubMed:23278621, ECO:0000269|PubMed:23855588, ECO:0000269|PubMed:7539673, ECO:0000269|PubMed:9008238, ECO:0000269|PubMed:9767294}. Note=The disease is caused by variants affecting the gene represented in this entry.
- Disease characterized by round or oval cystic tumors widely distributed on the back, anterior trunk, arms, scrotum, and thighs. {ECO:0000269|PubMed:16620218, ECO:0000269|PubMed:9008238, ECO:0000269|PubMed:9767294}. Note=The disease is caused by variants affecting the gene represented in this entry.
5 GO annotations of cellular component
| Name | Definition |
|---|---|
| cornified envelope | A type of plasma membrane that has been modified through addition of distinct intracellular and extracellular components, including ceramide, found in cornifying epithelial cells (corneocytes). |
| cytoskeleton | A cellular structure that forms the internal framework of eukaryotic and prokaryotic cells. The cytoskeleton includes intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. |
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| intermediate filament cytoskeleton | Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell. |
| keratin filament | A filament composed of acidic and basic keratins (types I and II), typically expressed in epithelial cells. The keratins are the most diverse classes of IF proteins, with a large number of keratin isoforms being expressed. Each type of epithelium always expresses a characteristic combination of type I and type II keratins. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. |
7 GO annotations of biological process
| Name | Definition |
|---|---|
| epithelial cell differentiation | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. |
| hair follicle morphogenesis | The process in which the anatomical structures of the hair follicle are generated and organized. |
| intermediate filament organization | Control of the spatial distribution of intermediate filaments; includes organizing filaments into meshworks, bundles, or other structures, as by cross-linking. |
| keratinization | The process in which the cytoplasm of the outermost cells of the vertebrate epidermis is replaced by keratin. Keratinization occurs in the stratum corneum, feathers, hair, claws, nails, hooves, and horns. |
| positive regulation of cell growth | Any process that activates or increases the frequency, rate, extent or direction of cell growth. |
| positive regulation of hair follicle development | Any process that activates or increases the frequency, rate or extent of hair follicle development. |
| positive regulation of translation | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. |
4 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| P02533 | KRT14 | Keratin, type I cytoskeletal 14 | Homo sapiens (Human) | PR |
| P05783 | KRT18 | Keratin, type I cytoskeletal 18 | Homo sapiens (Human) | PR |
| P19012 | KRT15 | Keratin, type I cytoskeletal 15 | Homo sapiens (Human) | PR |
| Q9QWL7 | Krt17 | Keratin, type I cytoskeletal 17 | Mus musculus (Mouse) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MTTSIRQFTS | SSSIKGSSGL | GGGSSRTSCR | LSGGLGAGSC | RLGSAGGLGS | TLGGSSYSSC |
| 70 | 80 | 90 | 100 | 110 | 120 |
| YSFGSGGGYG | SSFGGVDGLL | AGGEKATMQN | LNDRLASYLD | KVRALEEANT | ELEVKIRDWY |
| 130 | 140 | 150 | 160 | 170 | 180 |
| QRQAPGPARD | YSQYYRTIEE | LQNKILTATV | DNANILLQID | NARLAADDFR | TKFETEQALR |
| 190 | 200 | 210 | 220 | 230 | 240 |
| LSVEADINGL | RRVLDELTLA | RADLEMQIEN | LKEELAYLKK | NHEEEMNALR | GQVGGEINVE |
| 250 | 260 | 270 | 280 | 290 | 300 |
| MDAAPGVDLS | RILNEMRDQY | EKMAEKNRKD | AEDWFFSKTE | ELNREVATNS | ELVQSGKSEI |
| 310 | 320 | 330 | 340 | 350 | 360 |
| SELRRTMQAL | EIELQSQLSM | KASLEGNLAE | TENRYCVQLS | QIQGLIGSVE | EQLAQLRCEM |
| 370 | 380 | 390 | 400 | 410 | 420 |
| EQQNQEYKIL | LDVKTRLEQE | IATYRRLLEG | EDAHLTQYKK | EPVTTRQVRT | IVEEVQDGKV |
| 430 | |||||
| ISSREQVHQT | TR |