P55789
Gene name |
GFER (ALR, HERV1, HPO) |
Protein name |
FAD-linked sulfhydryl oxidase ALR |
Names |
Augmenter of liver regeneration, hERV1, Hepatopoietin |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:2671 |
EC number |
1.8.3.2: With oxygen as acceptor |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
8 structures for P55789
227 variants for P55789
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
|
RCV000676336 CA322387 RCV002517217 rs375792737 |
63 | E>D | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000508880 rs863224028 RCV000200750 RCV001270124 |
67 | R>missing | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome Mitochondrial disease [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV000679993 RCV000676337 rs1555486560 |
73 | A>missing | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
rs1597063051 RCV000824904 |
74 | C>missing | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome [ClinVar] | Yes |
ClinVar dbSNP |
|
RCV001355569 RCV001195755 CA394302768 rs1490540568 |
94 | D>N | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs771809901 RCV000199819 CA324368 RCV001254645 |
125 | Q>* | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV002550679 CA7826030 RCV000995468 rs763545328 |
141 | P>S | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA7826092 RCV000622535 rs373135339 |
189 | S>* | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
RCV000199876 rs121908192 CA119839 VAR_063435 RCV000624237 RCV000009228 |
194 | R>H | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome Inborn genetic diseases MPMCD; less stable than the wild-type protein within the mitochondria, increased rate of dissociation of FAD by about 45-fold [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
rs370475970 CA7826097 RCV000508691 RCV000709773 |
196 | R>C | Congenital cataract-progressive muscular hypotonia-hearing loss-developmental delay syndrome Mitochondrial disease [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs147568500 RCV002517218 RCV000196297 CA320714 |
198 | G>S | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1288959387 CA394299920 |
2 | A>V | No |
ClinGen gnomAD |
|
|
CA7825962 rs774614929 |
4 | P>S | No |
ClinGen ExAC gnomAD |
|
|
RCV002515403 RCV000199610 CA324151 rs863224025 |
5 | G>A | No |
ClinGen ClinVar TOPMed dbSNP |
|
|
CA276772872 rs1010125617 |
6 | E>D | No |
ClinGen TOPMed |
|
|
CA394300002 rs1192206034 |
7 | R>W | No |
ClinGen TOPMed |
|
|
RCV000487913 rs1064797204 |
9 | R>missing | No |
ClinVar dbSNP |
|
|
rs965662755 CA394300032 |
9 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
CA276772878 rs965662755 |
9 | R>G | No |
ClinGen TOPMed gnomAD |
|
|
CA394300081 rs1382599825 |
11 | H>Y | No |
ClinGen gnomAD |
|
|
CA394300106 rs1163584841 |
12 | G>A | No |
ClinGen gnomAD |
|
|
rs1440828796 CA394300104 |
12 | G>R | No |
ClinGen TOPMed gnomAD |
|
|
rs1440828796 CA394300103 |
12 | G>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1054493594 CA276772884 |
14 | N>K | No |
ClinGen TOPMed gnomAD |
|
|
CA394300150 rs1256055497 |
14 | N>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394300157 rs1256055497 |
14 | N>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1396004776 CA394300243 |
18 | L>R | No |
ClinGen gnomAD |
|
|
rs1276194720 CA394300276 |
19 | P>L | No |
ClinGen TOPMed |
|
|
rs893122483 CA276772896 |
19 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394300293 rs1472331160 |
20 | G>E | No |
ClinGen TOPMed gnomAD |
|
|
rs1042664976 CA276772900 |
20 | G>R | No |
ClinGen TOPMed |
|
| TCGA novel | 21 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
rs773199934 CA7825965 |
21 | G>D | No |
ClinGen ExAC gnomAD |
|
|
rs773199934 CA394300317 |
21 | G>V | No |
ClinGen ExAC gnomAD |
|
|
rs1322950310 CA394300352 |
22 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394300364 rs1408657594 |
23 | R>C | No |
ClinGen TOPMed gnomAD |
|
|
rs1470666851 CA394300382 |
24 | S>P | No |
ClinGen TOPMed |
|
|
rs902431596 CA276772919 |
25 | E>D | No |
ClinGen Ensembl |
|
|
rs1597062830 CA394300400 |
25 | E>K | No |
ClinGen Ensembl |
|
|
CA394300456 rs1169105325 |
26 | M>V | No |
ClinGen TOPMed |
|
|
CA276772924 rs1003355020 |
27 | M>T | No |
ClinGen gnomAD |
|
|
CA394300584 rs1200200618 |
31 | A>T | No |
ClinGen gnomAD |
|
|
rs972973281 CA276772928 |
33 | D>G | No |
ClinGen TOPMed |
|
|
rs1240408467 CA394300640 |
33 | D>N | No |
ClinGen gnomAD |
|
|
rs1183454721 CA394300678 |
34 | A>G | No |
ClinGen TOPMed gnomAD |
|
|
rs1183454721 CA394300680 |
34 | A>V | No |
ClinGen TOPMed gnomAD |
|
|
CA394300691 rs1401238152 |
35 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
CA394300688 rs1426118626 |
35 | R>W | No |
ClinGen gnomAD |
|
|
CA394300700 rs1204596051 |
36 | G>S | No |
ClinGen TOPMed |
|
|
rs1567334807 CA394300720 |
37 | R>L | No |
ClinGen Ensembl |
|
|
rs1165547554 CA394300728 |
38 | G>S | No |
ClinGen gnomAD |
|
|
rs753639816 CA7825968 |
39 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394300791 rs1333625525 |
41 | R>L | No |
ClinGen TOPMed gnomAD |
|
|
rs1333625525 CA394300775 |
41 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1308006803 CA394300792 |
42 | R>G | No |
ClinGen TOPMed |
|
|
CA276772938 rs1016725284 CA394300844 |
43 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
rs950089553 CA276772936 |
43 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA394300859 rs1227290820 |
44 | A>S | No |
ClinGen TOPMed gnomAD |
|
|
rs1227290820 CA394300850 |
44 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA394300867 rs1334563929 |
44 | A>V | No |
ClinGen gnomAD |
|
|
CA394300886 rs1461870557 |
45 | A>G | No |
ClinGen TOPMed |
|
|
CA276772943 rs962686909 |
45 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
CA394300894 rs1355612442 |
46 | A>P | No |
ClinGen TOPMed |
|
|
rs1173252857 CA394300922 |
46 | A>V | No |
ClinGen TOPMed |
|
|
CA394300941 rs1228865801 |
48 | A>S | No |
ClinGen gnomAD |
|
|
rs972426940 CA276772949 |
48 | A>V | No |
ClinGen TOPMed |
|
|
CA276772959 rs891592950 |
49 | S>W | No |
ClinGen TOPMed gnomAD |
|
|
CA394300993 rs1220019209 |
50 | T>K | No |
ClinGen gnomAD |
|
|
CA276772964 rs918808957 |
52 | A>P | No |
ClinGen Ensembl |
|
|
CA394301010 rs918808957 |
52 | A>T | No |
ClinGen Ensembl |
|
|
CA7825970 rs765134997 |
53 | Q>E | No |
ClinGen ExAC gnomAD |
|
|
CA7825971 rs752327413 |
53 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs1203465276 CA394301044 |
53 | Q>R | No |
ClinGen gnomAD |
|
|
rs1597062971 CA394301058 |
54 | A>T | No |
ClinGen Ensembl |
|
|
CA394301151 rs1183022825 |
57 | S>C | No |
ClinGen gnomAD |
|
|
CA394301172 rs1173038923 |
58 | D>G | No |
ClinGen gnomAD |
|
|
CA394301164 rs1476892322 |
58 | D>H | No |
ClinGen gnomAD |
|
|
rs1010571528 CA276772975 |
59 | S>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA394301220 rs1223766741 |
60 | P>S | No |
ClinGen TOPMed gnomAD |
|
|
CA394301247 rs1597063010 |
61 | V>L | No |
ClinGen Ensembl |
|
|
rs112534956 CA276772987 |
64 | D>E | No |
ClinGen Ensembl |
|
|
rs1360738973 CA394301292 |
64 | D>N | No |
ClinGen gnomAD |
|
|
rs901752142 CA276772990 |
65 | A>T | No |
ClinGen TOPMed gnomAD |
|
|
rs1401328877 CA394301383 |
67 | R>Q | No |
ClinGen TOPMed gnomAD |
|
|
rs1359181279 CA394301380 |
67 | R>W | No |
ClinGen TOPMed gnomAD |
|
|
CA276773000 rs1028643548 |
68 | R>T | No |
ClinGen TOPMed |
|
|
rs1456862514 CA394301425 |
69 | R>L | No |
ClinGen TOPMed |
|
|
CA7825975 rs780490309 |
70 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs749652504 CA7825976 |
72 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394301487 rs1180176254 |
72 | R>Q | No |
ClinGen gnomAD |
|
|
CA7825978 rs779254345 |
73 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394301527 rs1419715542 |
74 | C>S | No |
ClinGen TOPMed |
|
|
CA7825979 rs748329975 |
75 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1175661875 CA394301568 |
76 | D>Y | No |
ClinGen TOPMed gnomAD |
|
|
CA276773010 rs866480610 |
77 | F>L | No |
ClinGen Ensembl |
|
|
CA7825981 rs773323504 |
79 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1376805565 CA394301673 |
81 | M>I | No |
ClinGen gnomAD |
|
|
rs863224027 CA322695 RCV000198190 |
82 | R>Q | No |
ClinGen ClinVar dbSNP gnomAD |
|
|
rs201675904 CA7825982 |
82 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1189758959 CA394301714 |
83 | T>M | No |
ClinGen gnomAD |
|
|
CA394301718 rs1189758959 |
83 | T>R | No |
ClinGen gnomAD |
|
|
CA394301761 rs1426919551 |
85 | Q>* | No |
ClinGen gnomAD |
|
|
CA394301758 rs1426919551 |
85 | Q>E | No |
ClinGen gnomAD |
|
|
rs1409002625 CA394302041 |
87 | R>P | No |
ClinGen gnomAD |
|
|
CA394302048 rs1567335096 |
88 | D>H | No |
ClinGen Ensembl |
|
|
rs1398481343 CA394302095 |
89 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs1398481343 CA394302093 |
89 | T>S | No |
ClinGen TOPMed gnomAD |
|
|
rs863224024 RCV000195835 CA320213 |
90 | K>N | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
|
rs199651600 RCV000125221 RCV002514672 CA291055 |
90 | K>R | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
|
CA394302755 rs1340360725 |
92 | R>S | No |
ClinGen gnomAD |
|
|
rs762907502 CA7826005 |
93 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs762907502 CA394302757 |
93 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA276773092 rs895073717 |
95 | C>R | No |
ClinGen Ensembl |
|
|
rs1214146877 CA394302791 |
96 | P>S | No |
ClinGen gnomAD |
|
|
rs761533080 CA7826008 |
98 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA394302818 rs1242356007 |
99 | R>H | No |
ClinGen gnomAD |
|
|
rs1006300352 CA276773095 |
100 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
|
rs749958872 CA394302861 |
104 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs760018110 CA7826011 |
104 | R>H | No |
ClinGen ExAC gnomAD |
|
|
CA7826012 rs760018110 |
104 | R>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs749958872 CA7826010 |
104 | R>S | No |
ClinGen ExAC gnomAD |
|
|
CA276773101 rs962089141 |
105 | H>Q | No |
ClinGen TOPMed |
|
|
rs1272884614 CA394302868 |
105 | H>Y | No |
ClinGen TOPMed |
|
|
rs1341855876 CA394302879 |
106 | S>C | No |
ClinGen TOPMed |
|
| TCGA novel | 109 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
|
CA276773102 rs947853655 |
110 | L>P | No |
ClinGen Ensembl |
|
|
rs368889722 CA276773103 |
112 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs368889722 CA7826016 |
112 | T>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7826015 rs778201726 |
112 | T>S | No |
ClinGen ExAC gnomAD |
|
|
rs781395247 CA7826018 |
117 | Y>N | No |
ClinGen ExAC gnomAD |
|
|
CA7826020 rs201603991 |
118 | P>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA276773107 rs201603991 |
118 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
CA394302997 rs1219544893 |
119 | D>E | No |
ClinGen TOPMed gnomAD |
|
|
CA7826021 rs780196676 |
119 | D>H | No |
ClinGen ExAC gnomAD |
|
|
CA394302998 rs1255193848 |
120 | L>M | No |
ClinGen TOPMed gnomAD |
|
|
rs370700293 CA276773112 |
121 | P>H | No |
ClinGen ESP TOPMed gnomAD |
|
|
CA7826023 rs768270980 |
121 | P>S | No |
ClinGen ExAC gnomAD |
|
|
rs774235374 CA7826024 |
123 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7826025 rs774235374 |
123 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394303029 rs1411611534 |
123 | P>S | No |
ClinGen TOPMed |
|
|
CA394303063 rs1190836269 |
125 | Q>R | No |
ClinGen gnomAD |
|
|
rs772682634 CA7826026 |
127 | Q>R | No |
ClinGen ExAC |
|
|
rs1477936272 CA394303108 |
128 | D>N | No |
ClinGen TOPMed gnomAD |
|
|
rs1172344686 CA394303131 |
129 | M>I | No |
ClinGen gnomAD |
|
|
CA7826027 rs760247120 |
130 | A>D | No |
ClinGen ExAC gnomAD |
|
|
CA276773117 rs980288156 |
130 | A>T | No |
ClinGen TOPMed |
|
|
CA394303154 rs765722914 |
131 | Q>H | No |
ClinGen ExAC gnomAD |
|
|
rs528813454 CA276773122 |
133 | I>M | No |
ClinGen 1000Genomes |
|
|
CA394303181 rs1464878709 |
134 | H>Y | No |
ClinGen gnomAD |
|
|
CA394303227 rs1174790105 |
137 | S>C | No |
ClinGen gnomAD |
|
|
CA7826031 rs763545328 |
141 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7826032 rs373446345 |
141 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394303321 rs781628694 |
142 | C>F | No |
ClinGen ExAC gnomAD |
|
|
rs781628694 CA7826034 |
142 | C>Y | No |
ClinGen ExAC gnomAD |
|
|
rs750515991 CA7826035 |
143 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7826036 rs756203483 |
146 | A>V | No |
ClinGen ExAC gnomAD |
|
|
rs863224026 CA320516 RCV000196104 |
152 | R>G | No |
ClinGen ClinVar Ensembl dbSNP |
|
|
CA394303470 rs1222193741 |
152 | R>T | No |
ClinGen TOPMed |
|
|
rs1597063994 CA394303687 |
155 | R>K | No |
ClinGen Ensembl |
|
|
rs1244997202 CA394303713 |
156 | N>K | No |
ClinGen gnomAD |
|
|
CA7826070 rs760957301 |
161 | R>C | No |
ClinGen ExAC gnomAD |
|
|
rs760957301 CA394303834 |
161 | R>G | No |
ClinGen ExAC gnomAD |
|
|
CA7826071 rs766748062 |
161 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
|
rs1597064007 CA394303855 |
162 | T>A | No |
ClinGen Ensembl |
|
|
rs1437002371 CA394303859 |
162 | T>N | No |
ClinGen TOPMed |
|
|
CA394303889 rs755147804 |
163 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7826073 rs755147804 |
163 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs753862865 CA7826072 COSM968031 |
163 | R>W | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
|
CA394303917 rs1181856698 |
164 | A>V | No |
ClinGen gnomAD |
|
|
CA7826074 RCV000676339 VAR_061994 rs36041021 |
166 | F>L | No |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs36041021 CA394303957 |
166 | F>V | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs1165875692 CA394303976 |
167 | T>I | No |
ClinGen TOPMed gnomAD |
|
|
rs201762532 RCV000995469 CA7826075 |
168 | Q>* | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
rs201762532 CA394303986 |
168 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs200522227 CA276773488 |
171 | C>G | No |
ClinGen Ensembl |
|
|
rs1172541426 CA394304034 |
171 | C>Y | No |
ClinGen TOPMed gnomAD |
|
|
rs758350837 CA322208 RCV000197739 |
172 | H>N | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
|
CA394304050 rs1597064058 |
172 | H>P | No |
ClinGen Ensembl |
|
|
rs371922095 CA276773501 |
173 | L>V | No |
ClinGen ESP |
|
|
rs746842124 CA7826077 |
174 | H>D | No |
ClinGen ExAC TOPMed gnomAD |
|
|
rs1380639933 CA394304109 |
174 | H>R | No |
ClinGen gnomAD |
|
|
CA394304133 rs1213980840 |
175 | N>D | No |
ClinGen TOPMed |
|
|
CA7826079 rs780954807 COSM702531 |
175 | N>S | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
|
rs745520506 CA7826080 |
176 | E>* | No |
ClinGen ExAC gnomAD |
|
|
CA276773510 rs200006442 |
176 | E>D | No |
ClinGen 1000Genomes |
|
|
rs1268884974 CA394304168 |
176 | E>G | No |
ClinGen TOPMed |
|
|
rs201959073 CA7826081 |
177 | V>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
CA394304183 rs1220148687 |
177 | V>M | No |
ClinGen gnomAD |
|
|
CA7826083 rs201112184 |
179 | R>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs199541169 CA7826084 |
179 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394304250 rs1188721575 |
180 | K>E | No |
ClinGen gnomAD |
|
|
rs200344292 CA7826086 |
182 | G>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
|
rs866683967 CA276773518 |
182 | G>S | No |
ClinGen gnomAD |
|
|
CA394304311 rs1419899342 |
183 | K>E | No |
ClinGen gnomAD |
|
|
rs1387079177 CA394304364 |
184 | P>L | No |
ClinGen TOPMed gnomAD |
|
|
RCV000198653 CA323190 rs183638147 |
184 | P>T | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
|
rs776857102 CA7826087 |
185 | D>N | No |
ClinGen ExAC gnomAD |
|
|
CA7826089 rs142220504 |
186 | F>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA276773538 rs1028553365 |
187 | D>N | No |
ClinGen TOPMed |
|
|
rs1028553365 RCV001171575 |
187 | D>Y | No |
ClinVar dbSNP |
|
|
CA7826090 rs752821388 |
188 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394304472 rs752821388 |
188 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394304511 rs373135339 |
189 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
rs762842175 CA7826091 |
189 | S>P | No |
ClinGen ExAC gnomAD |
|
|
rs751340896 CA7826093 |
190 | K>T | No |
ClinGen ExAC gnomAD |
|
|
rs756987474 CA7826094 |
191 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA394304558 rs1363034255 |
192 | D>G | No |
ClinGen gnomAD |
|
|
CA394304585 rs1218976586 |
193 | E>D | No |
ClinGen TOPMed gnomAD |
|
|
CA394304567 rs1465478128 |
193 | E>K | No |
ClinGen Ensembl |
|
|
CA7826095 rs780851934 |
194 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
|
CA7826096 rs755745663 |
195 | W>* | No |
ClinGen ExAC gnomAD |
|
|
CA7826098 rs201243520 |
196 | R>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
|
rs28738719 CA7826102 |
197 | D>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
rs140398555 CA7826100 |
197 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA394304668 rs1427072801 |
198 | G>A | No |
ClinGen gnomAD |
|
|
rs147568500 CA394304663 |
198 | G>C | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
|
CA394304694 rs1454651553 |
199 | W>* | No |
ClinGen gnomAD |
|
|
CA7826103 rs759777543 |
199 | W>* | No |
ClinGen ExAC gnomAD |
|
|
rs764171720 CA7826107 |
201 | D>A | No |
ClinGen ExAC gnomAD |
|
|
rs142042300 CA7826106 |
201 | D>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7826105 rs142042300 |
201 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
|
CA7826108 rs751428853 |
202 | G>S | No |
ClinGen ExAC gnomAD |
|
|
CA7826109 rs761687015 |
203 | S>C | No |
ClinGen ExAC gnomAD |
|
|
rs767293111 CA7826110 |
204 | C>R | No |
ClinGen ExAC gnomAD |
|
|
CA276773592 rs889082052 |
204 | C>S | No |
ClinGen TOPMed |
|
|
CA276773595 rs1007556775 |
205 | D>A | No |
ClinGen TOPMed |
|
|
CA7826112 rs750234939 |
206 | D>Q | No |
ClinGen ExAC TOPMed |
1 associated diseases with P55789
[MIM: 613076]: Myopathy, mitochondrial progressive, with congenital cataract, hearing loss and developmental delay (MPMCD)
A disease characterized by progressive myopathy and partial combined respiratory-chain deficiency, congenital cataract, sensorineural hearing loss, and developmental delay. {ECO:0000269|PubMed:19409522, ECO:0000269|PubMed:20593814}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A disease characterized by progressive myopathy and partial combined respiratory-chain deficiency, congenital cataract, sensorineural hearing loss, and developmental delay. {ECO:0000269|PubMed:19409522, ECO:0000269|PubMed:20593814}. Note=The disease is caused by variants affecting the gene represented in this entry.
1 regional properties for P55789
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | ERV/ALR sulfhydryl oxidase domain | 95 - 196 | IPR017905 |
Functions
| Description | ||
|---|---|---|
| EC Number | 1.8.3.2 | With oxygen as acceptor |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
| mitochondrial intermembrane space | The region between the inner and outer lipid bilayers of the mitochondrial envelope. |
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
4 GO annotations of molecular function
| Name | Definition |
|---|---|
| flavin adenine dinucleotide binding | Binding to FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. |
| flavin-linked sulfhydryl oxidase activity | Catalysis of the formation of disulfide bridges in proteins using FAD as the electron acceptor. |
| growth factor activity | The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation. |
| protein-disulfide reductase activity | Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. |
10 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to actinomycin D | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus. |
| cellular response to lipopolysaccharide | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria. |
| cellular response to toxic substance | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus. |
| cellular response to tumor necrosis factor | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus. |
| liver development | The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes. |
| liver regeneration | The regrowth of lost or destroyed liver. |
| negative regulation of apoptotic process | Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. |
| negative regulation of natural killer cell mediated cytotoxicity | Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity. |
| negative regulation of oxidative stress-induced neuron death | Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death. |
| positive regulation of DNA biosynthetic process | Any process that activates or increases the frequency, rate or extent of DNA biosynthetic process. |
3 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q12284 | ERV2 | FAD-linked sulfhydryl oxidase ERV2 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| P56213 | Gfer | FAD-linked sulfhydryl oxidase ALR | Mus musculus (Mouse) | PR |
| Q63042 | Gfer | FAD-linked sulfhydryl oxidase ALR | Rattus norvegicus (Rat) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MAAPGERGRF | HGGNLFFLPG | GARSEMMDDL | ATDARGRGAG | RRDAAASAST | PAQAPTSDSP |
| 70 | 80 | 90 | 100 | 110 | 120 |
| VAEDASRRRP | CRACVDFKTW | MRTQQKRDTK | FREDCPPDRE | ELGRHSWAVL | HTLAAYYPDL |
| 130 | 140 | 150 | 160 | 170 | 180 |
| PTPEQQQDMA | QFIHLFSKFY | PCEECAEDLR | KRLCRNHPDT | RTRACFTQWL | CHLHNEVNRK |
| 190 | 200 | ||||
| LGKPDFDCSK | VDERWRDGWK | DGSCD |